Wall clock time and date at job start Mon Mar 30 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 C 1.53006 * 109.47235 * 119.99501 * 2 1 3 5 5 N 1.46893 * 109.47165 * 300.00504 * 4 2 1 6 6 C 1.46905 * 111.00246 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47500 * 204.99866 * 6 5 4 8 8 C 1.53000 * 109.47200 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46989 * 60.00030 * 8 7 6 10 10 C 1.50694 * 109.47168 * 59.99989 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99792 * 179.72330 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.53000 * 109.47124 * 299.99675 * 9 8 7 19 19 C 1.53000 * 109.46922 * 60.00284 * 18 9 8 20 20 C 1.50693 * 109.47316 * 239.99599 * 2 1 3 21 21 N 1.34776 * 119.99968 * 60.00217 * 20 2 1 22 22 O 1.21280 * 120.00400 * 239.99853 * 20 2 1 23 23 H 1.09003 * 109.47226 * 299.99837 * 1 2 3 24 24 H 1.09003 * 109.47226 * 60.00323 * 1 2 3 25 25 H 1.09002 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47612 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46735 * 299.99977 * 3 2 1 28 28 H 1.09001 * 109.47370 * 59.99373 * 3 2 1 29 29 H 1.08994 * 109.47345 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.46966 * 60.00159 * 4 2 1 31 31 H 1.00900 * 111.00244 * 303.94730 * 5 4 2 32 32 H 1.08998 * 109.46545 * 324.99920 * 6 5 4 33 33 H 1.08995 * 109.47132 * 59.99890 * 7 6 5 34 34 H 1.09007 * 109.46935 * 300.00130 * 7 6 5 35 35 H 1.08998 * 109.46768 * 300.00007 * 8 7 6 36 36 H 1.09000 * 109.47156 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46926 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 39 39 H 1.08995 * 109.47131 * 180.02562 * 18 9 8 40 40 H 1.08998 * 109.47544 * 300.00581 * 18 9 8 41 41 H 1.09000 * 109.47156 * 179.97438 * 19 18 9 42 42 H 1.09007 * 109.47356 * 59.99868 * 19 18 9 43 43 H 0.97002 * 119.99909 * 0.02562 * 21 20 2 44 44 H 0.96997 * 120.00226 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5502 -0.0287 2.4487 6 6 2.0208 -0.6950 3.6704 7 6 1.0588 -0.3904 4.8204 8 6 1.5485 -1.0850 6.0927 9 6 2.9459 -0.5729 6.4475 10 6 2.8923 0.9156 6.6766 11 1 1.9554 1.4437 6.5786 12 6 4.0395 1.6033 7.0116 13 7 3.9938 2.9032 7.2062 14 14 5.6602 0.6901 7.1806 15 1 6.3546 0.6670 5.8681 16 1 6.5147 1.3791 8.1806 17 1 5.3997 -0.7021 7.6272 18 6 3.9080 -0.8776 5.2975 19 6 3.4183 -0.1831 4.0253 20 6 2.0323 -0.7105 -1.2303 21 7 1.7067 -0.2501 -2.4545 22 8 2.7296 -1.6965 -1.1191 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 -0.7208 1.2496 30 1 1.6767 -1.7489 1.2494 31 1 1.8197 0.9436 2.4402 32 1 2.0599 -1.7717 3.5049 33 1 0.0633 -0.7556 4.5678 34 1 1.0196 0.6863 4.9858 35 1 1.5873 -2.1616 5.9269 36 1 0.8629 -0.8683 6.9118 37 1 3.2947 -1.0674 7.3542 38 1 4.8008 3.3869 7.4422 39 1 4.9036 -0.5132 5.5505 40 1 3.9468 -1.9542 5.1317 41 1 4.1039 -0.3998 3.2061 42 1 3.3795 0.8936 4.1910 43 1 1.1494 0.5388 -2.5435 44 1 2.0304 -0.7071 -3.2464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:22 Heat of formation + Delta-G solvation = -63.101247 kcal Electronic energy + Delta-G solvation = -21768.811208 eV Core-core repulsion = 18719.778437 eV Total energy + Delta-G solvation = -3049.032771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21559 -38.38447 -36.23909 -34.17147 -33.04722 -31.74531 -29.91122 -28.48461 -27.46277 -25.53413 -24.29225 -22.69033 -21.79934 -20.66574 -19.31387 -18.67754 -17.53031 -16.61782 -16.18572 -15.52713 -15.18565 -14.66333 -14.38463 -14.08928 -13.95136 -13.67296 -13.38419 -13.12178 -12.47800 -12.43694 -12.32896 -12.12423 -11.96479 -11.85194 -11.45300 -11.35056 -11.02910 -10.86803 -10.75340 -10.40522 -10.13252 -9.94481 -9.87522 -9.85852 -9.71415 -9.26651 -9.07825 -8.77240 -8.47354 -7.89590 -6.02092 -3.98253 2.52222 3.30016 3.31899 3.41413 3.43099 4.45873 4.46446 4.58170 4.74565 4.85738 5.11214 5.30723 5.43603 5.49623 5.60940 5.66823 5.67311 5.78451 5.86398 5.93328 6.01829 6.12914 6.20473 6.23961 6.25006 6.36312 6.39261 6.48357 6.57469 6.59805 6.73801 6.81340 7.08290 7.12239 7.13993 7.17796 7.32423 7.50673 7.56398 7.77626 7.87756 8.10721 8.60090 9.03055 9.62235 11.10971 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.004700 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.073514 B = 5955.780180 C = 6123.753981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.145 4.145 4 C 0.082 3.918 5 N -0.684 5.684 6 C 0.098 3.902 7 C -0.093 4.093 8 C -0.096 4.096 9 C 0.006 3.994 10 C -0.498 4.498 11 H 0.076 0.924 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.883 3.117 15 H -0.282 1.282 16 H -0.300 1.300 17 H -0.268 1.268 18 C -0.113 4.113 19 C -0.132 4.132 20 C 0.528 3.472 21 N -0.856 5.856 22 O -0.543 6.543 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.340 0.660 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.400 0.600 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 -3.978 -16.999 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.048 4.048 5 N -0.315 5.315 6 C -0.012 4.012 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.012 4.012 10 C -0.536 4.536 11 H 0.094 0.906 12 C -0.132 4.132 13 N -0.544 5.544 14 Si 0.715 3.285 15 H -0.209 1.209 16 H -0.228 1.228 17 H -0.193 1.193 18 C -0.151 4.151 19 C -0.171 4.171 20 C 0.312 3.688 21 N -0.420 5.420 22 O -0.419 6.419 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.229 0.771 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.615 -4.765 -16.691 18.575 hybrid contribution 1.985 0.113 -0.406 2.029 sum -4.629 -4.652 -17.097 18.314 Atomic orbital electron populations 1.21743 0.91601 1.02562 1.02798 1.20788 0.98176 0.96514 0.92965 1.21908 1.01544 0.93650 1.03173 1.21694 0.97550 0.97699 0.87854 1.60724 1.63163 1.06538 1.01078 1.21499 0.93643 0.97154 0.88862 1.21362 0.96299 1.02337 0.93146 1.21359 0.98385 0.96990 0.96728 1.19212 0.91466 0.97563 0.93004 1.21028 0.96340 0.90319 1.45920 0.90612 1.24993 0.98690 0.94587 0.94963 1.69905 1.28665 1.07015 1.48767 0.86905 0.84378 0.80232 0.77018 1.20893 1.22808 1.19278 1.21768 0.99330 0.96984 0.96991 1.22048 0.95723 1.02860 0.96503 1.20683 0.78979 0.83878 0.85224 1.43873 1.56196 1.33872 1.08031 1.90744 1.37695 1.26474 1.86954 0.89580 0.93217 0.92468 0.92211 0.92245 0.90265 0.94588 0.90681 0.84056 0.91886 0.93541 0.90672 0.94693 0.92778 0.95783 0.92916 0.93958 0.94749 0.94720 0.89924 0.77094 0.77116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.21 37.15 0.31 -0.90 16 2 C -0.08 -0.88 0.69 -155.67 -0.11 -0.99 16 3 C -0.15 -1.38 8.04 37.16 0.30 -1.08 16 4 C 0.08 1.15 3.73 -3.82 -0.01 1.13 16 5 N -0.68 -10.05 5.46 -106.73 -0.58 -10.63 16 6 C 0.10 1.69 2.47 -67.71 -0.17 1.52 16 7 C -0.09 -1.72 5.30 -26.73 -0.14 -1.86 16 8 C -0.10 -1.90 5.41 -26.73 -0.14 -2.05 16 9 C 0.01 0.15 2.18 -91.77 -0.20 -0.05 16 10 C -0.50 -13.39 7.19 -34.44 -0.25 -13.64 16 11 H 0.08 2.20 6.95 -52.49 -0.37 1.83 16 12 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 13 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 14 Si 0.88 22.19 24.37 -169.99 -4.14 18.05 16 15 H -0.28 -6.98 6.87 56.52 0.39 -6.59 16 16 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 17 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 18 C -0.11 -2.45 4.94 -26.73 -0.13 -2.58 16 19 C -0.13 -2.62 4.95 -26.73 -0.13 -2.76 16 20 C 0.53 6.18 6.75 -10.99 -0.07 6.11 16 21 N -0.86 -6.23 8.66 31.22 0.27 -5.96 16 22 O -0.54 -8.81 16.82 5.56 0.09 -8.71 16 23 H 0.09 0.88 7.60 -51.93 -0.39 0.48 16 24 H 0.05 0.34 7.57 -51.93 -0.39 -0.06 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 28 H 0.08 0.78 6.57 -51.93 -0.34 0.44 16 29 H 0.04 0.57 7.39 -51.93 -0.38 0.19 16 30 H 0.07 1.13 8.01 -51.93 -0.42 0.72 16 31 H 0.34 4.98 6.51 -39.29 -0.26 4.72 16 32 H 0.06 1.09 7.80 -51.93 -0.40 0.69 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.54 6.62 -51.93 -0.34 1.20 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.65 7.46 -51.93 -0.39 0.26 16 42 H 0.08 1.84 7.21 -51.93 -0.37 1.46 16 43 H 0.40 1.81 7.67 -40.82 -0.31 1.50 16 44 H 0.40 2.47 8.93 -40.82 -0.36 2.11 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -31.57 326.58 -6.91 -38.49 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.39 Total: 5.59 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.85 Total: -15.30 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.46 Total: -43.02 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.57 -6.91 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.615 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds