Wall clock time and date at job start Mon Mar 30 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 C 1.53006 * 109.47235 * 119.99501 * 2 1 3 5 5 N 1.46893 * 109.47165 * 300.00504 * 4 2 1 6 6 C 1.46905 * 111.00246 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47500 * 204.99866 * 6 5 4 8 8 C 1.53000 * 109.47200 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46989 * 60.00030 * 8 7 6 10 10 C 1.50694 * 109.47168 * 59.99989 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99792 * 179.72330 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.53000 * 109.47124 * 299.99675 * 9 8 7 19 19 C 1.53000 * 109.46922 * 60.00284 * 18 9 8 20 20 C 1.50693 * 109.47316 * 239.99599 * 2 1 3 21 21 N 1.34776 * 119.99968 * 60.00217 * 20 2 1 22 22 O 1.21280 * 120.00400 * 239.99853 * 20 2 1 23 23 H 1.09003 * 109.47226 * 299.99837 * 1 2 3 24 24 H 1.09003 * 109.47226 * 60.00323 * 1 2 3 25 25 H 1.09002 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47612 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46735 * 299.99977 * 3 2 1 28 28 H 1.09001 * 109.47370 * 59.99373 * 3 2 1 29 29 H 1.08994 * 109.47345 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.46966 * 60.00159 * 4 2 1 31 31 H 1.00900 * 111.00244 * 303.94730 * 5 4 2 32 32 H 1.08998 * 109.46545 * 324.99920 * 6 5 4 33 33 H 1.08995 * 109.47132 * 59.99890 * 7 6 5 34 34 H 1.09007 * 109.46935 * 300.00130 * 7 6 5 35 35 H 1.08998 * 109.46768 * 300.00007 * 8 7 6 36 36 H 1.09000 * 109.47156 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46926 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 39 39 H 1.08995 * 109.47131 * 180.02562 * 18 9 8 40 40 H 1.08998 * 109.47544 * 300.00581 * 18 9 8 41 41 H 1.09000 * 109.47156 * 179.97438 * 19 18 9 42 42 H 1.09007 * 109.47356 * 59.99868 * 19 18 9 43 43 H 0.97002 * 119.99909 * 0.02562 * 21 20 2 44 44 H 0.96997 * 120.00226 * 179.97438 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5502 -0.0287 2.4487 6 6 2.0208 -0.6950 3.6704 7 6 1.0588 -0.3904 4.8204 8 6 1.5485 -1.0850 6.0927 9 6 2.9459 -0.5729 6.4475 10 6 2.8923 0.9156 6.6766 11 1 1.9554 1.4437 6.5786 12 6 4.0395 1.6033 7.0116 13 7 3.9938 2.9032 7.2062 14 14 5.6602 0.6901 7.1806 15 1 6.3546 0.6670 5.8681 16 1 6.5147 1.3791 8.1806 17 1 5.3997 -0.7021 7.6272 18 6 3.9080 -0.8776 5.2975 19 6 3.4183 -0.1831 4.0253 20 6 2.0323 -0.7105 -1.2303 21 7 1.7067 -0.2501 -2.4545 22 8 2.7296 -1.6965 -1.1191 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 -0.7208 1.2496 30 1 1.6767 -1.7489 1.2494 31 1 1.8197 0.9436 2.4402 32 1 2.0599 -1.7717 3.5049 33 1 0.0633 -0.7556 4.5678 34 1 1.0196 0.6863 4.9858 35 1 1.5873 -2.1616 5.9269 36 1 0.8629 -0.8683 6.9118 37 1 3.2947 -1.0674 7.3542 38 1 4.8008 3.3869 7.4422 39 1 4.9036 -0.5132 5.5505 40 1 3.9468 -1.9542 5.1317 41 1 4.1039 -0.3998 3.2061 42 1 3.3795 0.8936 4.1910 43 1 1.1494 0.5388 -2.5435 44 1 2.0304 -0.7071 -3.2464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:22 Heat of formation + Delta-G solvation = -87.291747 kcal Electronic energy + Delta-G solvation = -21769.860187 eV Core-core repulsion = 18719.778437 eV Total energy + Delta-G solvation = -3050.081750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17010 -39.90642 -37.42263 -35.32649 -34.39510 -33.44484 -31.54884 -30.01593 -28.21894 -26.95211 -25.85499 -23.79059 -23.41702 -22.16794 -20.64098 -20.02832 -18.45516 -18.11284 -17.51515 -17.03509 -16.21035 -16.12852 -15.75207 -15.56638 -15.25421 -15.02425 -14.75469 -14.35285 -14.21882 -13.80429 -13.77967 -13.22882 -13.14613 -13.05324 -12.88930 -12.67253 -12.60979 -12.26443 -11.96672 -11.81706 -11.74500 -11.71146 -11.57851 -11.01294 -10.85525 -10.76839 -10.67922 -10.65184 -10.56706 -9.22643 -8.22284 -6.20361 1.29054 1.34857 1.43612 1.62782 2.35662 2.51834 3.14349 3.33412 3.69480 3.87184 3.94632 4.01488 4.07965 4.28079 4.31089 4.54007 4.62613 4.67093 4.71771 4.77873 4.79449 4.82454 4.87090 4.91876 4.95823 5.00685 5.05460 5.08458 5.23545 5.32223 5.45643 5.48494 5.49350 5.51476 5.62168 5.76249 5.86127 5.90652 6.16878 6.42530 6.44707 6.51312 6.85119 7.34586 7.42728 8.94060 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.004700 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.073514 B = 5955.780180 C = 6123.753981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 C -0.144 4.144 4 C 0.085 3.915 5 N -0.672 5.672 6 C 0.106 3.894 7 C -0.086 4.086 8 C -0.095 4.095 9 C 0.002 3.998 10 C -0.485 4.485 11 H 0.043 0.957 12 C 0.015 3.985 13 N -0.951 5.951 14 Si 0.936 3.064 15 H -0.277 1.277 16 H -0.305 1.305 17 H -0.252 1.252 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.526 3.474 21 N -0.832 5.832 22 O -0.595 6.595 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.065 0.935 31 H 0.341 0.659 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.417 0.583 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -5.160 -18.910 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.045 4.045 5 N -0.302 5.302 6 C -0.004 4.004 7 C -0.124 4.124 8 C -0.133 4.133 9 C -0.017 4.017 10 C -0.524 4.524 11 H 0.062 0.938 12 C -0.181 4.181 13 N -0.592 5.592 14 Si 0.766 3.234 15 H -0.204 1.204 16 H -0.233 1.233 17 H -0.176 1.176 18 C -0.153 4.153 19 C -0.165 4.165 20 C 0.311 3.689 21 N -0.396 5.396 22 O -0.475 6.475 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.249 0.751 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.430 -5.932 -18.645 20.929 hybrid contribution 2.136 0.518 0.144 2.203 sum -5.293 -5.415 -18.500 19.990 Atomic orbital electron populations 1.21725 0.89967 1.02476 1.04060 1.20716 0.99295 0.96675 0.91237 1.21923 1.00720 0.92883 1.04616 1.21649 0.96265 0.97625 0.88954 1.60700 1.62533 1.06461 1.00540 1.21367 0.91768 0.97714 0.89560 1.21263 0.97720 1.00364 0.93061 1.21334 0.96084 0.98633 0.97219 1.19232 0.94201 0.94738 0.93499 1.21252 0.94756 0.92400 1.43964 0.93845 1.25676 1.01960 0.95113 0.95322 1.70037 1.29468 1.08667 1.51060 0.86028 0.80675 0.79753 0.76965 1.20384 1.23287 1.17616 1.21755 0.97866 0.98782 0.96921 1.21967 0.97703 1.00718 0.96131 1.20783 0.78424 0.83237 0.86453 1.43655 1.55071 1.33873 1.06954 1.90727 1.40247 1.28820 1.87731 0.90293 0.90035 0.93199 0.93570 0.88989 0.90690 0.96717 0.91693 0.83949 0.90877 0.91335 0.93582 0.91904 0.93118 0.96425 0.93064 0.95602 0.92051 0.93816 0.93075 0.75088 0.76104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 8.21 71.98 0.59 -1.39 16 2 C -0.08 -1.51 0.69 -52.93 -0.04 -1.55 16 3 C -0.14 -2.45 8.04 71.98 0.58 -1.87 16 4 C 0.09 2.31 3.73 86.31 0.32 2.63 16 5 N -0.67 -19.07 5.46 -491.58 -2.68 -21.75 16 6 C 0.11 3.52 2.47 44.91 0.11 3.63 16 7 C -0.09 -3.06 5.30 30.59 0.16 -2.90 16 8 C -0.09 -3.58 5.41 30.59 0.17 -3.41 16 9 C 0.00 0.10 2.18 -11.54 -0.03 0.07 16 10 C -0.49 -26.60 7.19 25.60 0.18 -26.42 16 11 H 0.04 2.62 6.95 -2.91 -0.02 2.60 16 12 C 0.02 0.88 5.45 84.66 0.46 1.35 16 13 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 14 Si 0.94 46.04 24.37 68.60 1.67 47.71 16 15 H -0.28 -13.29 6.87 99.48 0.68 -12.61 16 16 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 17 H -0.25 -11.63 6.53 99.48 0.65 -10.98 16 18 C -0.12 -4.83 4.94 30.59 0.15 -4.68 16 19 C -0.13 -4.92 4.95 30.60 0.15 -4.77 16 20 C 0.53 11.41 6.75 87.65 0.59 12.00 16 21 N -0.83 -9.68 8.66 -173.54 -1.50 -11.19 16 22 O -0.59 -18.98 16.82 -3.03 -0.05 -19.03 16 23 H 0.08 1.41 7.60 -2.39 -0.02 1.39 16 24 H 0.08 0.77 7.57 -2.39 -0.02 0.76 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.95 7.56 -2.39 -0.02 0.93 16 28 H 0.07 1.36 6.57 -2.39 -0.02 1.35 16 29 H 0.01 0.46 7.39 -2.39 -0.02 0.44 16 30 H 0.06 1.90 8.01 -2.39 -0.02 1.88 16 31 H 0.34 9.83 6.51 -89.69 -0.58 9.25 16 32 H 0.07 2.35 7.80 -2.39 -0.02 2.33 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.91 6.62 -2.38 -0.02 1.89 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.03 1.17 3.27 -2.39 -0.01 1.16 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.61 7.46 -2.39 -0.02 1.59 16 42 H 0.05 2.31 7.21 -2.38 -0.02 2.29 16 43 H 0.42 2.12 7.67 -92.71 -0.71 1.40 16 44 H 0.41 3.95 8.93 -92.71 -0.83 3.12 16 Total: -1.00 -70.30 326.58 -0.05 -70.35 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -1.19 Total: 19.89 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.41 Total: -27.31 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -3.89 Total: -91.61 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.67 Total: 47.71 kcal Total: -70.30 -0.05 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.943 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds