Wall clock time and date at job start Mon Mar 30 2020 00:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47098 * 55.00162 * 4 3 2 6 6 C 1.53004 * 109.47444 * 295.00361 * 4 3 2 7 7 C 1.50697 * 109.47518 * 174.99917 * 4 3 2 8 8 O 1.21286 * 119.99865 * 4.55684 * 7 4 3 9 9 N 1.34774 * 120.00506 * 184.55288 * 7 4 3 10 10 C 1.47422 * 125.64834 * 185.63484 * 9 7 4 11 11 C 1.54912 * 104.83194 * 204.09367 * 10 9 7 12 12 C 1.55156 * 101.58208 * 322.99184 * 11 10 9 13 13 H 1.09000 * 110.72580 * 277.14209 * 12 11 10 14 14 N 1.46497 * 110.72398 * 153.86305 * 12 11 10 15 15 C 1.36941 * 119.99799 * 86.45421 * 14 12 11 16 16 H 1.07997 * 119.99976 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99750 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99788 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46917 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47201 * 119.99890 * 19 17 15 22 22 H 1.48500 * 109.47008 * 239.99857 * 19 17 15 23 23 C 1.47023 * 125.64612 * 5.32959 * 9 7 4 24 24 H 1.08992 * 109.88102 * 298.39645 * 23 9 7 25 25 C 1.53005 * 109.88165 * 59.56045 * 23 9 7 26 26 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46890 * 300.00164 * 1 2 3 28 28 H 1.08998 * 109.47014 * 59.99729 * 1 2 3 29 29 H 1.09003 * 109.46890 * 239.99835 * 2 1 3 30 30 H 1.08998 * 109.47014 * 120.00271 * 2 1 3 31 31 H 1.08996 * 109.47047 * 60.00316 * 3 2 1 32 32 H 1.08998 * 109.47364 * 300.00056 * 3 2 1 33 33 H 1.08998 * 109.47152 * 184.97242 * 6 4 3 34 34 H 1.09003 * 109.46277 * 304.97455 * 6 4 3 35 35 H 1.08995 * 109.46941 * 64.96712 * 6 4 3 36 36 H 1.09000 * 110.37137 * 322.93362 * 10 9 7 37 37 H 1.09004 * 110.36275 * 85.14956 * 10 9 7 38 38 H 1.08998 * 111.00530 * 81.06335 * 11 10 9 39 39 H 1.08998 * 111.00622 * 204.88582 * 11 10 9 40 40 H 0.97000 * 120.00078 * 266.45896 * 14 12 11 41 41 H 0.96996 * 120.00368 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.46842 * 52.37534 * 25 23 9 43 43 H 1.08996 * 109.46963 * 172.37464 * 25 23 9 44 44 H 1.09001 * 109.47083 * 292.37784 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0725 2.8578 -0.1232 8 8 3.2875 3.7824 -0.1208 9 7 5.3941 3.0963 -0.2365 10 6 6.0293 4.4266 -0.2470 11 6 7.3713 4.2194 -0.9927 12 6 7.7905 2.8112 -0.4941 13 1 8.2852 2.8766 0.4750 14 7 8.6545 2.1500 -1.4751 15 6 10.0062 2.3684 -1.4543 16 1 10.4353 3.0279 -0.7144 17 6 10.8249 1.7423 -2.3842 18 7 10.3020 0.9382 -3.2855 19 14 12.6689 2.0397 -2.3553 20 1 13.0019 2.9770 -1.2526 21 1 13.3748 0.7511 -2.1405 22 1 13.0957 2.6281 -3.6503 23 6 6.4417 2.0726 -0.3640 24 1 6.4486 1.4372 0.5216 25 6 6.1924 1.2258 -1.6137 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 5.1659 0.9132 1.3475 34 1 3.6449 1.3685 2.1523 35 1 3.7907 -0.2169 1.3565 36 1 5.4043 5.1413 -0.7823 37 1 6.2087 4.7692 0.7722 38 1 7.2228 4.2233 -2.0725 39 1 8.1022 4.9724 -0.6981 40 1 8.2692 1.5575 -2.1394 41 1 10.8740 0.5010 -3.9355 42 1 6.0717 1.8796 -2.4774 43 1 7.0405 0.5609 -1.7771 44 1 5.2875 0.6337 -1.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178375905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:19 Heat of formation + Delta-G solvation = -30.889055 kcal Electronic energy + Delta-G solvation = -21580.192460 eV Core-core repulsion = 18532.556514 eV Total energy + Delta-G solvation = -3047.635946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27682 -37.80589 -35.95213 -34.13668 -32.50492 -31.45532 -30.53784 -28.77677 -26.71841 -25.33394 -24.46697 -23.50872 -22.07004 -20.45284 -19.75425 -18.63050 -17.60476 -16.71201 -15.79781 -15.50310 -15.20369 -14.63666 -14.37323 -14.09840 -13.81078 -13.71173 -13.24866 -12.83288 -12.57377 -12.44979 -12.29023 -12.15842 -12.03423 -11.79600 -11.54147 -11.35401 -11.15514 -11.10465 -10.95528 -10.88214 -10.73825 -10.58056 -10.36777 -10.13872 -9.98994 -9.71292 -9.47071 -8.99318 -8.36365 -7.07400 -5.86912 -3.16558 2.84370 3.22325 3.37990 3.44431 3.46176 4.47706 4.57684 4.68923 4.83519 4.98368 5.05970 5.10447 5.19628 5.22587 5.37337 5.47634 5.50453 5.54755 5.57394 5.62610 5.68388 5.75833 5.78511 5.82639 5.87398 5.98762 6.02338 6.05503 6.10248 6.18917 6.27329 6.29441 6.31224 6.44790 6.57288 6.62068 6.71011 6.92943 7.63213 7.82290 8.31797 8.39643 9.43760 9.97701 10.32554 11.35682 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.004196 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.309091 B = 6670.633730 C = 7215.450948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.117 4.117 5 H 0.105 0.895 6 C -0.150 4.150 7 C 0.534 3.466 8 O -0.554 6.554 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.153 4.153 12 C 0.174 3.826 13 H 0.063 0.937 14 N -0.718 5.718 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.116 3.884 24 H 0.079 0.921 25 C -0.171 4.171 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.390 0.610 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -1.312 7.452 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.138 4.138 5 H 0.123 0.877 6 C -0.207 4.207 7 C 0.323 3.677 8 O -0.433 6.433 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.081 0.919 14 N -0.362 5.362 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.012 3.988 24 H 0.097 0.903 25 C -0.229 4.229 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.229 0.771 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.290 -0.814 7.480 16.149 hybrid contribution 1.028 0.018 -0.347 1.085 sum -13.262 -0.796 7.132 15.079 Atomic orbital electron populations 1.21758 0.95926 1.01346 1.01861 1.21599 0.95829 0.96794 1.02164 1.21425 0.92547 0.96449 1.03247 1.21556 0.97330 0.93778 1.01159 0.87727 1.21919 1.02116 1.01033 0.95605 1.20300 0.80536 0.91304 0.75575 1.90652 1.54652 1.46454 1.51495 1.48614 1.05407 1.08516 1.71646 1.22239 0.94544 0.84941 1.00149 1.23541 0.94346 1.00836 1.00703 1.21159 0.88320 0.90077 0.94210 0.91875 1.42716 1.03686 1.54412 1.35396 1.19286 0.83104 1.22766 1.12306 0.90994 1.24744 0.98146 0.99626 0.98138 1.69654 1.34366 1.33758 1.20185 0.86109 0.85389 0.77335 0.77278 1.20500 1.21813 1.21845 1.22042 0.88463 0.89917 0.98413 0.90327 1.22323 1.02282 1.00542 0.97714 0.92895 0.92807 0.92763 0.91954 0.91735 0.91471 0.91403 0.91328 0.92356 0.91357 0.91205 0.92030 0.90775 0.90658 0.77124 0.93413 0.91960 0.89224 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.15 5.69 -26.73 -0.15 -1.31 16 3 C -0.10 -1.13 4.00 -26.73 -0.11 -1.24 16 4 C -0.12 -1.45 2.02 -91.77 -0.19 -1.63 16 5 H 0.11 1.25 5.04 -51.92 -0.26 0.99 16 6 C -0.15 -1.59 8.72 37.16 0.32 -1.27 16 7 C 0.53 8.46 6.93 -10.99 -0.08 8.38 16 8 O -0.55 -10.46 16.20 5.55 0.09 -10.37 16 9 N -0.61 -9.52 3.07 -163.01 -0.50 -10.02 16 10 C 0.10 1.61 6.93 -2.53 -0.02 1.60 16 11 C -0.15 -2.61 6.77 -24.58 -0.17 -2.78 16 12 C 0.17 3.21 3.45 -66.09 -0.23 2.98 16 13 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 14 N -0.72 -16.61 5.00 -51.65 -0.26 -16.87 16 15 C -0.24 -6.37 9.98 -15.06 -0.15 -6.52 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 19 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.12 1.81 2.93 -66.94 -0.20 1.61 16 24 H 0.08 1.13 5.57 -51.93 -0.29 0.84 16 25 C -0.17 -2.70 8.02 37.16 0.30 -2.40 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 6.68 -51.93 -0.35 0.20 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 33 H 0.07 0.77 5.08 -51.93 -0.26 0.50 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.61 6.81 -51.93 -0.35 0.25 16 36 H 0.07 1.11 7.99 -51.93 -0.41 0.69 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.39 9.42 4.85 -40.82 -0.20 9.22 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.60 6.30 -51.93 -0.33 1.27 16 44 H 0.05 0.72 4.99 -51.93 -0.26 0.47 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -29.71 336.06 -7.61 -37.32 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.33 Total: 8.25 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.38 Total: -3.82 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.03 Total: -52.97 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.71 -7.61 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178375905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.436 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds