Wall clock time and date at job start Mon Mar 30 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47098 * 55.00162 * 4 3 2 6 6 C 1.53004 * 109.47444 * 295.00361 * 4 3 2 7 7 C 1.50697 * 109.47518 * 174.99917 * 4 3 2 8 8 O 1.21286 * 119.99865 * 4.55684 * 7 4 3 9 9 N 1.34774 * 120.00506 * 184.55288 * 7 4 3 10 10 C 1.47422 * 125.64834 * 185.63484 * 9 7 4 11 11 C 1.54912 * 104.83194 * 204.09367 * 10 9 7 12 12 C 1.55156 * 101.58208 * 322.99184 * 11 10 9 13 13 H 1.09000 * 110.72580 * 277.14209 * 12 11 10 14 14 N 1.46497 * 110.72398 * 153.86305 * 12 11 10 15 15 C 1.36941 * 119.99799 * 86.45421 * 14 12 11 16 16 H 1.07997 * 119.99976 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99750 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99788 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46917 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47201 * 119.99890 * 19 17 15 22 22 H 1.48500 * 109.47008 * 239.99857 * 19 17 15 23 23 C 1.47023 * 125.64612 * 5.32959 * 9 7 4 24 24 H 1.08992 * 109.88102 * 298.39645 * 23 9 7 25 25 C 1.53005 * 109.88165 * 59.56045 * 23 9 7 26 26 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46890 * 300.00164 * 1 2 3 28 28 H 1.08998 * 109.47014 * 59.99729 * 1 2 3 29 29 H 1.09003 * 109.46890 * 239.99835 * 2 1 3 30 30 H 1.08998 * 109.47014 * 120.00271 * 2 1 3 31 31 H 1.08996 * 109.47047 * 60.00316 * 3 2 1 32 32 H 1.08998 * 109.47364 * 300.00056 * 3 2 1 33 33 H 1.08998 * 109.47152 * 184.97242 * 6 4 3 34 34 H 1.09003 * 109.46277 * 304.97455 * 6 4 3 35 35 H 1.08995 * 109.46941 * 64.96712 * 6 4 3 36 36 H 1.09000 * 110.37137 * 322.93362 * 10 9 7 37 37 H 1.09004 * 110.36275 * 85.14956 * 10 9 7 38 38 H 1.08998 * 111.00530 * 81.06335 * 11 10 9 39 39 H 1.08998 * 111.00622 * 204.88582 * 11 10 9 40 40 H 0.97000 * 120.00078 * 266.45896 * 14 12 11 41 41 H 0.96996 * 120.00368 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.46842 * 52.37534 * 25 23 9 43 43 H 1.08996 * 109.46963 * 172.37464 * 25 23 9 44 44 H 1.09001 * 109.47083 * 292.37784 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0725 2.8578 -0.1232 8 8 3.2875 3.7824 -0.1208 9 7 5.3941 3.0963 -0.2365 10 6 6.0293 4.4266 -0.2470 11 6 7.3713 4.2194 -0.9927 12 6 7.7905 2.8112 -0.4941 13 1 8.2852 2.8766 0.4750 14 7 8.6545 2.1500 -1.4751 15 6 10.0062 2.3684 -1.4543 16 1 10.4353 3.0279 -0.7144 17 6 10.8249 1.7423 -2.3842 18 7 10.3020 0.9382 -3.2855 19 14 12.6689 2.0397 -2.3553 20 1 13.0019 2.9770 -1.2526 21 1 13.3748 0.7511 -2.1405 22 1 13.0957 2.6281 -3.6503 23 6 6.4417 2.0726 -0.3640 24 1 6.4486 1.4372 0.5216 25 6 6.1924 1.2258 -1.6137 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 5.1659 0.9132 1.3475 34 1 3.6449 1.3685 2.1523 35 1 3.7907 -0.2169 1.3565 36 1 5.4043 5.1413 -0.7823 37 1 6.2087 4.7692 0.7722 38 1 7.2228 4.2233 -2.0725 39 1 8.1022 4.9724 -0.6981 40 1 8.2692 1.5575 -2.1394 41 1 10.8740 0.5010 -3.9355 42 1 6.0717 1.8796 -2.4774 43 1 7.0405 0.5609 -1.7771 44 1 5.2875 0.6337 -1.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178375905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:18 Heat of formation + Delta-G solvation = -47.963927 kcal Electronic energy + Delta-G solvation = -21580.932882 eV Core-core repulsion = 18532.556514 eV Total energy + Delta-G solvation = -3048.376368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55410 -39.16200 -36.93729 -35.88438 -33.58315 -33.13126 -31.71799 -30.41310 -27.55117 -26.83230 -25.65093 -25.24339 -23.10338 -21.48012 -21.14904 -19.88431 -19.43236 -18.00849 -17.12056 -16.73598 -16.51260 -16.08630 -15.75790 -15.43430 -15.03332 -14.84093 -14.74983 -14.00410 -13.84990 -13.57188 -13.37586 -13.27328 -13.12019 -13.08161 -12.91478 -12.84927 -12.77387 -12.52348 -12.11105 -12.07702 -11.91025 -11.78070 -11.74464 -11.57264 -11.40968 -11.22484 -10.90537 -10.72922 -9.67056 -8.99415 -7.92788 -5.20875 1.50485 1.51730 1.59873 1.60654 1.97953 2.58466 3.36844 3.42055 3.66678 3.77589 3.87160 3.93635 3.99509 4.15944 4.28128 4.29850 4.32087 4.37461 4.41336 4.57122 4.64802 4.74819 4.78999 4.82711 4.85446 4.88337 4.95214 5.03166 5.07552 5.15266 5.17034 5.23732 5.27257 5.32847 5.38268 5.45154 5.50706 5.53546 5.57388 6.29715 6.55231 7.13383 7.37928 8.10506 8.34828 9.30715 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.004196 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.309091 B = 6670.633730 C = 7215.450948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.113 4.113 5 H 0.112 0.888 6 C -0.146 4.146 7 C 0.529 3.471 8 O -0.588 6.588 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.144 4.144 12 C 0.165 3.835 13 H 0.070 0.930 14 N -0.729 5.729 15 C -0.238 4.238 16 H 0.078 0.922 17 C -0.071 4.071 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.299 1.299 23 C 0.126 3.874 24 H 0.101 0.899 25 C -0.163 4.163 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.383 0.617 41 H 0.250 0.750 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -1.862 9.016 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.133 4.133 4 C -0.133 4.133 5 H 0.129 0.871 6 C -0.203 4.203 7 C 0.320 3.680 8 O -0.469 6.469 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.185 4.185 12 C 0.055 3.945 13 H 0.088 0.912 14 N -0.372 5.372 15 C -0.369 4.369 16 H 0.096 0.904 17 C -0.264 4.264 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.226 1.226 23 C 0.023 3.977 24 H 0.119 0.881 25 C -0.221 4.221 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.220 0.780 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.780 -1.340 9.084 17.400 hybrid contribution 1.104 0.258 -0.800 1.388 sum -13.676 -1.081 8.283 16.026 Atomic orbital electron populations 1.21767 0.95410 1.02135 1.01669 1.21582 0.96294 0.95026 1.03017 1.21389 0.91926 0.97937 1.02006 1.21607 0.97836 0.91422 1.02455 0.87094 1.21922 1.01698 1.02327 0.94327 1.20984 0.80027 0.92489 0.74545 1.90637 1.55308 1.47872 1.53041 1.48664 1.05571 1.08424 1.71464 1.22210 0.93357 0.85071 1.00834 1.23360 0.95501 1.00132 0.99493 1.21369 0.89166 0.90698 0.93303 0.91222 1.42868 1.03372 1.54736 1.36252 1.19654 0.84518 1.21376 1.11400 0.90383 1.25466 1.01944 1.00411 0.98565 1.69793 1.35368 1.35410 1.21240 0.85148 0.80931 0.77029 0.77081 1.19024 1.22209 1.22626 1.21925 0.86880 0.89669 0.99259 0.88110 1.22223 1.02742 1.00097 0.97011 0.91599 0.92774 0.93280 0.91483 0.90409 0.92283 0.93166 0.91699 0.92310 0.88959 0.91692 0.90148 0.92932 0.89956 0.77950 0.94078 0.93886 0.91235 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.92 5.69 30.59 0.17 -1.74 16 3 C -0.09 -2.02 4.00 30.59 0.12 -1.90 16 4 C -0.11 -2.54 2.02 -11.54 -0.02 -2.56 16 5 H 0.11 2.36 5.04 -2.38 -0.01 2.35 16 6 C -0.15 -2.65 8.72 71.98 0.63 -2.03 16 7 C 0.53 16.07 6.93 87.66 0.61 16.68 16 8 O -0.59 -21.87 16.20 -3.05 -0.05 -21.92 16 9 N -0.61 -18.15 3.07 -788.03 -2.42 -20.58 16 10 C 0.11 3.22 6.93 86.86 0.60 3.82 16 11 C -0.14 -4.80 6.77 31.99 0.22 -4.59 16 12 C 0.16 5.90 3.45 46.18 0.16 6.05 16 13 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 14 N -0.73 -33.59 5.00 -317.31 -1.59 -35.18 16 15 C -0.24 -12.31 9.98 84.03 0.84 -11.47 16 16 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 18 N -0.97 -56.50 13.06 21.65 0.28 -56.21 16 19 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 23 C 0.13 3.76 2.93 45.35 0.13 3.89 16 24 H 0.10 2.62 5.57 -2.39 -0.01 2.61 16 25 C -0.16 -5.00 8.02 71.98 0.58 -4.42 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.04 6.68 -2.39 -0.02 1.02 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.24 8.02 -2.39 -0.02 1.22 16 33 H 0.06 1.24 5.08 -2.39 -0.01 1.23 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.27 6.81 -2.39 -0.02 1.25 16 36 H 0.06 2.02 7.99 -2.39 -0.02 2.00 16 37 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.38 18.73 4.85 -92.71 -0.45 18.28 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 2.47 6.30 -2.39 -0.02 2.45 16 44 H 0.08 2.04 4.99 -2.39 -0.01 2.03 16 Total: -1.00 -63.52 336.06 4.00 -59.52 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.53 Total: 31.21 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.22 Total: -3.22 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.73 Total: -111.97 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.52 4.00 -59.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178375905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.554 kcal (2) G-P(sol) polarization free energy of solvation -63.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds