Wall clock time and date at job start Mon Mar 30 2020 01:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.52998 * 109.47088 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.37093 * 120.00012 * 270.00044 * 5 4 3 7 7 H 1.08000 * 119.99758 * 143.23285 * 6 5 4 8 8 C 1.38945 * 120.00310 * 323.23134 * 6 5 4 9 9 N 1.31412 * 120.00524 * 159.79892 * 8 6 5 10 10 Si 1.86804 * 119.99747 * 339.80430 * 8 6 5 11 11 H 1.48494 * 109.47192 * 95.29199 * 10 8 6 12 12 H 1.48504 * 109.46971 * 215.29100 * 10 8 6 13 13 H 1.48500 * 109.46990 * 335.28681 * 10 8 6 14 14 C 1.34779 * 119.99553 * 89.99673 * 5 4 3 15 15 O 1.21290 * 120.00297 * 5.11150 * 14 5 4 16 16 C 1.50698 * 119.99627 * 185.10633 * 14 5 4 17 17 H 1.09004 * 109.46542 * 327.98060 * 16 14 5 18 18 C 1.53047 * 109.46064 * 87.95499 * 16 14 5 19 19 C 1.53117 * 109.27987 * 179.18420 * 18 16 14 20 20 C 1.53123 * 109.16024 * 302.34903 * 19 18 16 21 21 C 1.53032 * 109.27963 * 57.65155 * 20 19 18 22 22 N 1.46841 * 109.45652 * 208.00239 * 16 14 5 23 23 C 1.46899 * 111.00224 * 54.15335 * 22 16 14 24 24 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46638 * 299.99761 * 1 2 3 26 26 H 1.08997 * 109.47322 * 59.99617 * 1 2 3 27 27 H 1.08999 * 109.46638 * 240.00238 * 2 1 3 28 28 H 1.08997 * 109.47322 * 120.00383 * 2 1 3 29 29 H 1.08999 * 109.47201 * 60.00583 * 3 2 1 30 30 H 1.08997 * 109.47366 * 300.00356 * 3 2 1 31 31 H 1.09003 * 109.47556 * 59.99773 * 4 3 2 32 32 H 1.09010 * 109.46904 * 300.00445 * 4 3 2 33 33 H 0.96996 * 120.00416 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.49984 * 59.24121 * 18 16 14 35 35 H 1.08995 * 109.49946 * 299.12643 * 18 16 14 36 36 H 1.09004 * 109.52275 * 62.24762 * 19 18 16 37 37 H 1.08993 * 109.52306 * 182.44293 * 19 18 16 38 38 H 1.09000 * 109.50050 * 177.59549 * 20 19 18 39 39 H 1.09001 * 109.49912 * 297.71143 * 20 19 18 40 40 H 1.09000 * 109.46052 * 180.80609 * 21 20 19 41 41 H 1.09004 * 109.45364 * 60.83487 * 21 20 19 42 42 H 1.08995 * 109.46997 * 59.99842 * 23 22 16 43 43 H 1.08993 * 109.47605 * 180.02562 * 23 22 16 44 44 H 1.09004 * 109.46911 * 300.00026 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2864 3.4707 -1.1870 7 1 4.0649 4.5237 -1.2793 8 6 4.8025 2.7717 -2.2713 9 7 4.6579 3.2463 -3.4882 10 14 5.7019 1.1572 -1.9993 11 1 4.7561 0.0270 -2.1813 12 1 6.8111 1.0372 -2.9794 13 1 6.2536 1.1240 -0.6209 14 6 4.2835 3.4583 1.1675 15 8 4.1711 2.8581 2.2155 16 6 4.6749 4.9135 1.1708 17 1 5.2575 5.1350 0.2766 18 6 3.4138 5.7807 1.1854 19 6 3.8162 7.2578 1.2093 20 6 4.6955 7.5194 2.4353 21 6 5.9193 6.6019 2.3845 22 7 5.4815 5.2004 2.3639 23 6 6.6298 4.2888 2.4547 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9331 0.9288 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 5.0179 2.7582 -4.2451 34 1 2.8237 5.5498 2.0723 35 1 2.8231 5.5788 0.2919 36 1 4.3732 7.4983 0.3037 37 1 2.9217 7.8782 1.2635 38 1 5.0204 8.5599 2.4348 39 1 4.1255 7.3160 3.3419 40 1 6.5401 6.7756 3.2634 41 1 6.4960 6.8155 1.4845 42 1 7.2578 4.4065 1.5717 43 1 7.2098 4.5228 3.3473 44 1 6.2735 3.2603 2.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178695031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:36 Heat of formation + Delta-G solvation = -38.083080 kcal Electronic energy + Delta-G solvation = -22311.964132 eV Core-core repulsion = 19264.016230 eV Total energy + Delta-G solvation = -3047.947902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63722 -37.60504 -35.43772 -34.03030 -33.02851 -31.88590 -30.78326 -28.51451 -26.37131 -24.88601 -24.00855 -22.68697 -22.12042 -20.71496 -19.55642 -18.79848 -17.02093 -16.35178 -15.44454 -15.05644 -14.82766 -14.63549 -14.12043 -13.92779 -13.91881 -13.43397 -13.08728 -12.92799 -12.67281 -12.49949 -12.38865 -12.09944 -11.84850 -11.65720 -11.36610 -11.25835 -11.08596 -10.79397 -10.69551 -10.61118 -10.46915 -10.36200 -10.25372 -10.08614 -9.92203 -9.73109 -9.14446 -8.43919 -7.90264 -7.62980 -6.50834 -4.09524 3.01748 3.18773 3.26391 3.68666 4.06465 4.13880 4.61469 4.92968 5.15232 5.24702 5.28655 5.36635 5.40154 5.53080 5.63880 5.75366 5.78788 5.86603 5.91509 5.94940 6.01130 6.11857 6.12107 6.16365 6.20582 6.23885 6.24215 6.26750 6.36195 6.38986 6.45204 6.50691 6.52774 6.59011 6.77771 6.79262 6.92355 7.35749 7.49934 7.59348 8.05324 8.23108 8.94340 9.36554 9.69839 10.59557 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.007411 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.813583 B = 3777.298048 C = 4415.981448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.103 3.897 5 N -0.467 5.467 6 C -0.344 4.344 7 H 0.105 0.895 8 C 0.067 3.933 9 N -0.860 5.860 10 Si 0.877 3.123 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.489 3.511 15 O -0.581 6.581 16 C 0.082 3.918 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.115 4.115 21 C 0.057 3.943 22 N -0.523 5.523 23 C 0.023 3.977 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.275 0.725 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 2.434 6.065 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.020 4.020 5 N -0.188 5.188 6 C -0.470 4.470 7 H 0.123 0.877 8 C -0.140 4.140 9 N -0.496 5.496 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.277 3.723 15 O -0.464 6.464 16 C -0.029 4.029 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.072 4.072 22 N -0.248 5.248 23 C -0.125 4.125 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.656 2.036 6.764 7.256 hybrid contribution 1.063 -0.710 -1.011 1.630 sum -0.594 1.326 5.753 5.934 Atomic orbital electron populations 1.21737 0.96139 1.00869 1.01757 1.21484 0.95613 0.97506 1.01568 1.21844 0.96001 0.95954 1.02546 1.21599 0.93998 0.85454 1.00925 1.43773 1.57566 1.11683 1.05743 1.19076 1.44030 0.96990 0.86948 0.87742 1.25303 0.95755 0.98165 0.94758 1.69743 1.41627 1.40090 0.98109 0.86950 0.79913 0.83657 0.78968 1.20071 1.21706 1.18735 1.20121 0.79912 0.88708 0.83527 1.90526 1.55966 1.68059 1.31868 1.21421 0.95853 0.93597 0.92019 0.91094 1.21423 0.96355 0.93504 1.02638 1.21570 0.99441 0.96493 0.98099 1.21581 0.96693 0.97940 0.99092 1.22079 0.96475 0.88462 1.00146 1.61649 1.20943 1.02551 1.39671 1.22419 0.91796 0.99002 0.99308 0.93295 0.92908 0.92759 0.92329 0.92299 0.92080 0.91163 0.92067 0.91347 0.91509 0.91402 0.90728 0.92021 0.91972 0.92019 0.91288 0.91176 0.95183 0.96250 0.92227 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.12 -2.43 5.54 -26.73 -0.15 -2.58 16 4 C 0.10 2.30 4.24 -4.04 -0.02 2.28 16 5 N -0.47 -11.17 2.20 -114.81 -0.25 -11.43 16 6 C -0.34 -8.76 8.75 -14.94 -0.13 -8.89 16 7 H 0.11 2.77 6.60 -52.49 -0.35 2.42 16 8 C 0.07 1.76 5.35 -17.47 -0.09 1.66 16 9 N -0.86 -23.36 13.96 55.50 0.77 -22.58 16 10 Si 0.88 20.57 24.85 -169.99 -4.22 16.35 16 11 H -0.27 -6.16 6.70 56.52 0.38 -5.78 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.49 11.44 5.78 -10.99 -0.06 11.37 16 15 O -0.58 -14.64 14.65 5.55 0.08 -14.56 16 16 C 0.08 1.68 1.47 -68.87 -0.10 1.58 16 17 H 0.07 1.56 6.71 -51.93 -0.35 1.21 16 18 C -0.10 -1.82 5.29 -26.65 -0.14 -1.96 16 19 C -0.12 -1.73 6.00 -26.61 -0.16 -1.89 16 20 C -0.12 -1.55 6.09 -26.65 -0.16 -1.72 16 21 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 22 N -0.52 -9.78 4.51 -236.33 -1.07 -10.85 16 23 C 0.02 0.42 9.12 60.06 0.55 0.97 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.06 1.40 2.99 -51.93 -0.16 1.24 16 32 H 0.07 1.53 7.36 -51.92 -0.38 1.15 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.40 7.66 -51.93 -0.40 1.01 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 44 H 0.08 1.75 5.94 -51.93 -0.31 1.44 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -28.32 335.74 -7.76 -36.09 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.86 Total: 4.06 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.28 Total: -2.13 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.54 Total: -44.86 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.22 Total: 16.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.32 -7.76 -36.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178695031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.997 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds