Wall clock time and date at job start Mon Mar 30 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.52998 * 109.47088 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.37093 * 120.00012 * 270.00044 * 5 4 3 7 7 H 1.08000 * 119.99758 * 143.23285 * 6 5 4 8 8 C 1.38945 * 120.00310 * 323.23134 * 6 5 4 9 9 N 1.31412 * 120.00524 * 159.79892 * 8 6 5 10 10 Si 1.86804 * 119.99747 * 339.80430 * 8 6 5 11 11 H 1.48494 * 109.47192 * 95.29199 * 10 8 6 12 12 H 1.48504 * 109.46971 * 215.29100 * 10 8 6 13 13 H 1.48500 * 109.46990 * 335.28681 * 10 8 6 14 14 C 1.34779 * 119.99553 * 89.99673 * 5 4 3 15 15 O 1.21290 * 120.00297 * 5.11150 * 14 5 4 16 16 C 1.50698 * 119.99627 * 185.10633 * 14 5 4 17 17 H 1.09004 * 109.46542 * 327.98060 * 16 14 5 18 18 C 1.53047 * 109.46064 * 87.95499 * 16 14 5 19 19 C 1.53117 * 109.27987 * 179.18420 * 18 16 14 20 20 C 1.53123 * 109.16024 * 302.34903 * 19 18 16 21 21 C 1.53032 * 109.27963 * 57.65155 * 20 19 18 22 22 N 1.46841 * 109.45652 * 208.00239 * 16 14 5 23 23 C 1.46899 * 111.00224 * 54.15335 * 22 16 14 24 24 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46638 * 299.99761 * 1 2 3 26 26 H 1.08997 * 109.47322 * 59.99617 * 1 2 3 27 27 H 1.08999 * 109.46638 * 240.00238 * 2 1 3 28 28 H 1.08997 * 109.47322 * 120.00383 * 2 1 3 29 29 H 1.08999 * 109.47201 * 60.00583 * 3 2 1 30 30 H 1.08997 * 109.47366 * 300.00356 * 3 2 1 31 31 H 1.09003 * 109.47556 * 59.99773 * 4 3 2 32 32 H 1.09010 * 109.46904 * 300.00445 * 4 3 2 33 33 H 0.96996 * 120.00416 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.49984 * 59.24121 * 18 16 14 35 35 H 1.08995 * 109.49946 * 299.12643 * 18 16 14 36 36 H 1.09004 * 109.52275 * 62.24762 * 19 18 16 37 37 H 1.08993 * 109.52306 * 182.44293 * 19 18 16 38 38 H 1.09000 * 109.50050 * 177.59549 * 20 19 18 39 39 H 1.09001 * 109.49912 * 297.71143 * 20 19 18 40 40 H 1.09000 * 109.46052 * 180.80609 * 21 20 19 41 41 H 1.09004 * 109.45364 * 60.83487 * 21 20 19 42 42 H 1.08995 * 109.46997 * 59.99842 * 23 22 16 43 43 H 1.08993 * 109.47605 * 180.02562 * 23 22 16 44 44 H 1.09004 * 109.46911 * 300.00026 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2864 3.4707 -1.1870 7 1 4.0649 4.5237 -1.2793 8 6 4.8025 2.7717 -2.2713 9 7 4.6579 3.2463 -3.4882 10 14 5.7019 1.1572 -1.9993 11 1 4.7561 0.0270 -2.1813 12 1 6.8111 1.0372 -2.9794 13 1 6.2536 1.1240 -0.6209 14 6 4.2835 3.4583 1.1675 15 8 4.1711 2.8581 2.2155 16 6 4.6749 4.9135 1.1708 17 1 5.2575 5.1350 0.2766 18 6 3.4138 5.7807 1.1854 19 6 3.8162 7.2578 1.2093 20 6 4.6955 7.5194 2.4353 21 6 5.9193 6.6019 2.3845 22 7 5.4815 5.2004 2.3639 23 6 6.6298 4.2888 2.4547 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9331 0.9288 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 5.0179 2.7582 -4.2451 34 1 2.8237 5.5498 2.0723 35 1 2.8231 5.5788 0.2919 36 1 4.3732 7.4983 0.3037 37 1 2.9217 7.8782 1.2635 38 1 5.0204 8.5599 2.4348 39 1 4.1255 7.3160 3.3419 40 1 6.5401 6.7756 3.2634 41 1 6.4960 6.8155 1.4845 42 1 7.2578 4.4065 1.5717 43 1 7.2098 4.5228 3.3473 44 1 6.2735 3.2603 2.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178695031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:35 Heat of formation + Delta-G solvation = -55.080922 kcal Electronic energy + Delta-G solvation = -22312.701214 eV Core-core repulsion = 19264.016230 eV Total energy + Delta-G solvation = -3048.684984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34762 -39.16299 -37.19961 -35.64010 -34.40550 -33.84593 -32.20319 -30.01495 -27.80144 -26.85008 -25.50312 -24.09678 -23.54747 -22.15199 -21.04706 -20.55292 -18.81743 -18.19773 -17.27303 -16.54829 -16.38557 -16.14806 -15.72485 -15.53841 -15.27915 -14.88793 -14.73041 -14.63351 -14.07581 -13.96954 -13.90494 -13.62628 -13.40143 -13.26015 -12.95377 -12.81400 -12.62499 -12.26398 -12.22157 -12.09908 -11.95597 -11.77537 -11.73912 -11.60867 -11.47580 -11.26318 -11.02541 -10.28337 -9.76844 -9.21017 -8.54295 -6.14534 1.12454 1.25694 1.35806 1.82942 2.12392 2.45358 2.87054 3.14829 3.83041 3.90623 3.94570 4.01085 4.07006 4.20561 4.25160 4.28106 4.34950 4.39754 4.47692 4.53319 4.57129 4.68380 4.73313 4.79817 4.85929 4.88921 4.90574 4.97681 5.03417 5.06339 5.08266 5.17697 5.20803 5.25218 5.32018 5.39214 5.46267 5.48335 5.93219 6.07017 6.22829 6.25254 6.92943 7.40739 7.77224 8.59258 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.007411 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.813583 B = 3777.298048 C = 4415.981448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.097 3.903 5 N -0.476 5.476 6 C -0.338 4.338 7 H 0.087 0.913 8 C 0.033 3.967 9 N -0.893 5.893 10 Si 0.921 3.079 11 H -0.256 1.256 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.484 3.516 15 O -0.601 6.601 16 C 0.087 3.913 17 H 0.050 0.950 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.109 4.109 21 C 0.052 3.948 22 N -0.533 5.533 23 C 0.026 3.974 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.280 0.720 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.015 0.985 43 H 0.090 0.910 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 2.789 7.046 7.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.026 4.026 5 N -0.198 5.198 6 C -0.465 4.465 7 H 0.104 0.896 8 C -0.171 4.171 9 N -0.530 5.530 10 Si 0.748 3.252 11 H -0.182 1.182 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.274 3.726 15 O -0.485 6.485 16 C -0.024 4.024 17 H 0.068 0.932 18 C -0.135 4.135 19 C -0.151 4.151 20 C -0.147 4.147 21 C -0.075 4.075 22 N -0.259 5.259 23 C -0.122 4.122 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.034 0.966 43 H 0.109 0.891 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.768 2.391 7.741 8.293 hybrid contribution 1.106 -0.784 -1.257 1.849 sum -0.661 1.608 6.485 6.713 Atomic orbital electron populations 1.21707 0.94005 1.02490 1.01886 1.21486 0.97486 0.94850 1.02076 1.21748 0.93926 0.98325 1.01365 1.21731 0.95893 0.84554 1.00394 1.43906 1.58011 1.12353 1.05484 1.18939 1.43692 0.96433 0.87456 0.89583 1.25753 0.96213 1.00662 0.94497 1.69792 1.42839 1.41583 0.98740 0.86229 0.79340 0.81526 0.78062 1.18203 1.21144 1.20033 1.20694 0.79019 0.89921 0.82964 1.90498 1.56804 1.68858 1.32381 1.21338 0.96952 0.91955 0.92156 0.93182 1.21390 0.94906 0.95773 1.01412 1.21569 1.00805 0.93928 0.98832 1.21592 0.95590 0.99368 0.98154 1.22279 0.97707 0.86360 1.01201 1.61713 1.21176 1.04703 1.38283 1.22372 0.91849 0.97376 1.00644 0.90924 0.92633 0.92845 0.92118 0.91489 0.92915 0.92547 0.92497 0.91723 0.91044 0.92005 0.92460 0.92342 0.89606 0.88653 0.91223 0.88728 0.95303 0.96617 0.89096 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.74 5.93 30.60 0.18 -3.56 16 3 C -0.12 -4.49 5.54 30.59 0.17 -4.32 16 4 C 0.10 4.35 4.24 86.38 0.37 4.72 16 5 N -0.48 -23.38 2.20 -635.54 -1.40 -24.78 16 6 C -0.34 -17.72 8.75 84.04 0.74 -16.98 16 7 H 0.09 4.76 6.60 -2.91 -0.02 4.74 16 8 C 0.03 1.76 5.35 84.93 0.45 2.21 16 9 N -0.89 -49.09 13.96 21.66 0.30 -48.79 16 10 Si 0.92 42.48 24.85 68.60 1.70 44.19 16 11 H -0.26 -11.01 6.70 99.48 0.67 -10.35 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 C 0.48 23.22 5.78 87.66 0.51 23.72 16 15 O -0.60 -30.86 14.65 -3.06 -0.04 -30.90 16 16 C 0.09 3.62 1.47 44.20 0.06 3.69 16 17 H 0.05 2.27 6.71 -2.38 -0.02 2.26 16 18 C -0.10 -3.49 5.29 30.65 0.16 -3.32 16 19 C -0.11 -3.13 6.00 30.67 0.18 -2.95 16 20 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16 21 C 0.05 1.44 5.46 86.32 0.47 1.91 16 22 N -0.53 -19.55 4.51 -901.61 -4.06 -23.62 16 23 C 0.03 0.93 9.12 127.69 1.16 2.10 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.59 2.99 -2.39 -0.01 2.59 16 32 H 0.06 2.92 7.36 -2.38 -0.02 2.91 16 33 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.22 7.66 -2.39 -0.02 2.21 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 41 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 44 H 0.05 2.15 5.94 -2.38 -0.01 2.14 16 Total: -1.00 -61.54 335.74 2.77 -58.77 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.91 Total: 23.26 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.36 Total: 1.87 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.16 Total: -97.19 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.04 Total: -30.90 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.70 Total: 44.19 kcal Total: -61.54 2.77 -58.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178695031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.692 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds