Wall clock time and date at job start Mon Mar 30 2020 01:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46722 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99998 * 268.14064 * 5 4 3 7 7 H 1.08001 * 120.00232 * 138.90531 * 6 5 4 8 8 C 1.38956 * 120.00006 * 318.90957 * 6 5 4 9 9 N 1.31405 * 119.99924 * 338.32315 * 8 6 5 10 10 Si 1.86801 * 119.99864 * 158.31944 * 8 6 5 11 11 H 1.48495 * 109.47258 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46847 * 120.00340 * 10 8 6 13 13 H 1.48500 * 109.46888 * 239.99713 * 10 8 6 14 14 C 1.34771 * 120.00409 * 88.14652 * 5 4 3 15 15 O 1.21293 * 120.00179 * 356.22255 * 14 5 4 16 16 C 1.50702 * 120.00312 * 176.22392 * 14 5 4 17 17 H 1.08994 * 109.47458 * 38.38885 * 16 14 5 18 18 C 1.53003 * 109.46828 * 278.39553 * 16 14 5 19 19 N 1.46897 * 109.47527 * 158.39788 * 16 14 5 20 20 C 1.47844 * 111.00288 * 173.40078 * 19 16 14 21 21 C 1.54908 * 104.79637 * 146.35910 * 20 19 16 22 22 C 1.55134 * 101.65648 * 322.93052 * 21 20 19 23 23 C 1.47441 * 110.99723 * 294.24286 * 19 16 14 24 24 H 1.08992 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46890 * 300.00175 * 1 2 3 26 26 H 1.09006 * 109.46474 * 59.99664 * 1 2 3 27 27 H 1.09004 * 109.46970 * 240.00241 * 2 1 3 28 28 H 1.08997 * 109.46845 * 119.99866 * 2 1 3 29 29 H 1.08997 * 109.46870 * 59.99601 * 3 2 1 30 30 H 1.08997 * 109.47146 * 299.99681 * 3 2 1 31 31 H 1.08993 * 109.47129 * 59.99848 * 4 3 2 32 32 H 1.08997 * 109.46882 * 299.99719 * 4 3 2 33 33 H 0.97003 * 120.00111 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47273 * 53.29260 * 18 16 14 35 35 H 1.09006 * 109.47311 * 173.29829 * 18 16 14 36 36 H 1.09002 * 109.46841 * 293.29407 * 18 16 14 37 37 H 1.09000 * 110.37394 * 27.53227 * 20 19 16 38 38 H 1.09003 * 110.37140 * 265.18635 * 20 19 16 39 39 H 1.08997 * 110.99249 * 204.83487 * 21 20 19 40 40 H 1.09003 * 110.98894 * 81.02078 * 21 20 19 41 41 H 1.08996 * 110.71062 * 154.03176 * 22 21 20 42 42 H 1.09002 * 110.70836 * 277.27232 * 22 21 20 43 43 H 1.09000 * 109.89180 * 117.33454 * 23 19 16 44 44 H 1.09005 * 109.89063 * 356.14299 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3227 3.4578 -1.1865 7 1 4.0403 4.4916 -1.3209 8 6 4.9538 2.7705 -2.2161 9 7 5.6683 1.7002 -1.9503 10 14 4.7866 3.3681 -3.9780 11 1 3.9351 4.5843 -4.0095 12 1 6.1306 3.6900 -4.5212 13 1 4.1606 2.3046 -4.8040 14 6 4.2479 3.4709 1.1668 15 8 3.9497 2.9349 2.2131 16 6 4.8304 4.8608 1.1715 17 1 4.4325 5.4245 0.3277 18 6 6.3536 4.7758 1.0551 19 7 4.4722 5.5377 2.4251 20 6 5.1554 6.8441 2.5359 21 6 4.1518 7.7528 3.2887 22 6 2.7967 7.2753 2.7036 23 6 3.0170 5.7604 2.5082 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 6.1092 1.2206 -2.6691 34 1 6.6185 4.1712 0.1878 35 1 6.7657 5.7783 0.9388 36 1 6.7618 4.3175 1.9559 37 1 5.3642 7.2484 1.5454 38 1 6.0780 6.7425 3.1075 39 1 4.3280 8.8036 3.0586 40 1 4.1966 7.5773 4.3636 41 1 1.9862 7.4590 3.4088 42 1 2.5962 7.7619 1.7491 43 1 2.6060 5.2134 3.3566 44 1 2.5384 5.4322 1.5855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180580172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:11 Heat of formation + Delta-G solvation = -42.250398 kcal Electronic energy + Delta-G solvation = -22046.469513 eV Core-core repulsion = 18998.340902 eV Total energy + Delta-G solvation = -3048.128611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.33254 -37.70254 -35.20113 -33.93060 -32.70245 -31.44482 -28.88941 -28.68153 -27.68628 -24.88944 -23.90212 -22.22733 -20.78112 -20.53312 -20.00510 -18.89661 -16.75774 -16.20662 -15.51974 -15.35624 -14.73785 -14.40385 -14.17367 -13.83321 -13.28623 -13.18379 -13.08227 -12.59867 -12.33457 -12.17662 -11.92577 -11.83275 -11.58307 -11.28026 -11.22115 -11.02927 -10.93731 -10.81616 -10.74102 -10.65951 -10.53041 -10.48014 -10.37359 -10.29596 -10.12896 -9.67507 -9.04460 -8.28481 -7.64775 -7.39676 -6.37221 -4.08587 3.08816 3.20448 3.23280 3.98829 4.08348 4.35007 4.80590 4.93813 4.98090 5.04720 5.23393 5.49781 5.54628 5.61439 5.67464 5.73462 5.91584 5.93991 5.98630 6.00381 6.06229 6.09071 6.18021 6.24917 6.25646 6.32530 6.38361 6.42520 6.52178 6.55205 6.59444 6.67066 6.74785 6.84963 7.00114 7.13972 7.37113 7.44819 7.53108 7.63315 8.01377 8.39370 9.11340 9.60579 10.03668 10.64799 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.007348 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.052445 B = 3809.420801 C = 5021.521884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.127 4.127 4 C 0.124 3.876 5 N -0.443 5.443 6 C -0.341 4.341 7 H 0.083 0.917 8 C 0.050 3.950 9 N -0.854 5.854 10 Si 0.905 3.095 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.483 3.517 15 O -0.585 6.585 16 C 0.080 3.920 17 H 0.056 0.944 18 C -0.130 4.130 19 N -0.510 5.510 20 C 0.044 3.956 21 C -0.128 4.128 22 C -0.143 4.143 23 C 0.052 3.948 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 6.143 2.694 7.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.166 4.166 4 C 0.000 4.000 5 N -0.162 5.162 6 C -0.469 4.469 7 H 0.101 0.899 8 C -0.157 4.157 9 N -0.490 5.490 10 Si 0.731 3.269 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.271 3.729 15 O -0.469 6.469 16 C -0.031 4.031 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.235 5.235 20 C -0.084 4.084 21 C -0.166 4.166 22 C -0.182 4.182 23 C -0.076 4.076 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.753 5.366 3.490 7.421 hybrid contribution -0.269 0.741 -1.845 2.006 sum -4.022 6.107 1.646 7.495 Atomic orbital electron populations 1.21754 0.96670 1.00643 1.01449 1.21440 0.94965 0.97837 1.01545 1.21905 0.98007 0.95384 1.01303 1.21236 0.91038 0.85161 1.02569 1.43388 1.56435 1.11986 1.04406 1.19279 1.39024 0.98123 0.90483 0.89949 1.25346 0.93744 0.96515 1.00118 1.69995 1.26856 1.19153 1.32982 0.86236 0.78234 0.79125 0.83282 1.19272 1.20725 1.20495 1.20226 0.80837 0.88022 0.83842 1.90518 1.55198 1.69161 1.32027 1.21544 0.97274 0.94515 0.89745 0.92581 1.21641 0.92820 1.01204 1.03180 1.63379 1.05904 1.18814 1.35421 1.23028 0.97801 0.88672 0.98892 1.22687 0.94859 0.98634 1.00450 1.22824 0.97777 0.96865 1.00719 1.22695 0.89107 0.94053 1.01720 0.93449 0.93083 0.93086 0.92334 0.92405 0.92868 0.92406 0.88968 0.93016 0.92171 0.90080 0.93400 0.92489 0.93823 0.90593 0.91381 0.90895 0.91201 0.91868 0.90606 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.61 5.53 -26.73 -0.15 -2.76 16 4 C 0.12 2.96 4.94 -4.04 -0.02 2.94 16 5 N -0.44 -11.09 2.49 -114.82 -0.29 -11.37 16 6 C -0.34 -8.49 7.91 -14.93 -0.12 -8.61 16 7 H 0.08 2.01 6.72 -52.49 -0.35 1.66 16 8 C 0.05 1.23 4.89 -17.47 -0.09 1.14 16 9 N -0.85 -22.18 11.78 55.50 0.65 -21.52 16 10 Si 0.90 19.15 29.60 -169.99 -5.03 14.12 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 C 0.48 11.97 6.02 -10.99 -0.07 11.90 16 15 O -0.59 -15.88 15.83 5.55 0.09 -15.79 16 16 C 0.08 1.70 1.37 -68.86 -0.09 1.60 16 17 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 18 C -0.13 -2.59 8.73 37.16 0.32 -2.27 16 19 N -0.51 -9.72 4.69 -224.67 -1.05 -10.78 16 20 C 0.04 0.66 5.44 -2.30 -0.01 0.65 16 21 C -0.13 -1.62 7.08 -24.60 -0.17 -1.79 16 22 C -0.14 -1.94 6.94 -24.91 -0.17 -2.11 16 23 C 0.05 0.92 6.03 -2.83 -0.02 0.91 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 2.32 5.83 -51.93 -0.30 2.01 16 32 H 0.05 1.30 7.53 -51.93 -0.39 0.91 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.08 1.79 7.62 -51.93 -0.40 1.40 16 35 H 0.05 0.80 6.96 -51.93 -0.36 0.44 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.65 7.27 -51.93 -0.38 0.27 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.05 0.96 7.24 -51.93 -0.38 0.59 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -28.34 344.43 -8.76 -37.11 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.95 Total: 5.39 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.37 Total: -2.34 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.69 Total: -43.68 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.09 Total: -15.79 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.34 -8.76 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180580172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.143 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds