Wall clock time and date at job start Mon Mar 30 2020 01:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46722 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99998 * 268.14064 * 5 4 3 7 7 H 1.08001 * 120.00232 * 138.90531 * 6 5 4 8 8 C 1.38956 * 120.00006 * 318.90957 * 6 5 4 9 9 N 1.31405 * 119.99924 * 338.32315 * 8 6 5 10 10 Si 1.86801 * 119.99864 * 158.31944 * 8 6 5 11 11 H 1.48495 * 109.47258 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46847 * 120.00340 * 10 8 6 13 13 H 1.48500 * 109.46888 * 239.99713 * 10 8 6 14 14 C 1.34771 * 120.00409 * 88.14652 * 5 4 3 15 15 O 1.21293 * 120.00179 * 356.22255 * 14 5 4 16 16 C 1.50702 * 120.00312 * 176.22392 * 14 5 4 17 17 H 1.08994 * 109.47458 * 38.38885 * 16 14 5 18 18 C 1.53003 * 109.46828 * 278.39553 * 16 14 5 19 19 N 1.46897 * 109.47527 * 158.39788 * 16 14 5 20 20 C 1.47844 * 111.00288 * 173.40078 * 19 16 14 21 21 C 1.54908 * 104.79637 * 146.35910 * 20 19 16 22 22 C 1.55134 * 101.65648 * 322.93052 * 21 20 19 23 23 C 1.47441 * 110.99723 * 294.24286 * 19 16 14 24 24 H 1.08992 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46890 * 300.00175 * 1 2 3 26 26 H 1.09006 * 109.46474 * 59.99664 * 1 2 3 27 27 H 1.09004 * 109.46970 * 240.00241 * 2 1 3 28 28 H 1.08997 * 109.46845 * 119.99866 * 2 1 3 29 29 H 1.08997 * 109.46870 * 59.99601 * 3 2 1 30 30 H 1.08997 * 109.47146 * 299.99681 * 3 2 1 31 31 H 1.08993 * 109.47129 * 59.99848 * 4 3 2 32 32 H 1.08997 * 109.46882 * 299.99719 * 4 3 2 33 33 H 0.97003 * 120.00111 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47273 * 53.29260 * 18 16 14 35 35 H 1.09006 * 109.47311 * 173.29829 * 18 16 14 36 36 H 1.09002 * 109.46841 * 293.29407 * 18 16 14 37 37 H 1.09000 * 110.37394 * 27.53227 * 20 19 16 38 38 H 1.09003 * 110.37140 * 265.18635 * 20 19 16 39 39 H 1.08997 * 110.99249 * 204.83487 * 21 20 19 40 40 H 1.09003 * 110.98894 * 81.02078 * 21 20 19 41 41 H 1.08996 * 110.71062 * 154.03176 * 22 21 20 42 42 H 1.09002 * 110.70836 * 277.27232 * 22 21 20 43 43 H 1.09000 * 109.89180 * 117.33454 * 23 19 16 44 44 H 1.09005 * 109.89063 * 356.14299 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3227 3.4578 -1.1865 7 1 4.0403 4.4916 -1.3209 8 6 4.9538 2.7705 -2.2161 9 7 5.6683 1.7002 -1.9503 10 14 4.7866 3.3681 -3.9780 11 1 3.9351 4.5843 -4.0095 12 1 6.1306 3.6900 -4.5212 13 1 4.1606 2.3046 -4.8040 14 6 4.2479 3.4709 1.1668 15 8 3.9497 2.9349 2.2131 16 6 4.8304 4.8608 1.1715 17 1 4.4325 5.4245 0.3277 18 6 6.3536 4.7758 1.0551 19 7 4.4722 5.5377 2.4251 20 6 5.1554 6.8441 2.5359 21 6 4.1518 7.7528 3.2887 22 6 2.7967 7.2753 2.7036 23 6 3.0170 5.7604 2.5082 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 6.1092 1.2206 -2.6691 34 1 6.6185 4.1712 0.1878 35 1 6.7657 5.7783 0.9388 36 1 6.7618 4.3175 1.9559 37 1 5.3642 7.2484 1.5454 38 1 6.0780 6.7425 3.1075 39 1 4.3280 8.8036 3.0586 40 1 4.1966 7.5773 4.3636 41 1 1.9862 7.4590 3.4088 42 1 2.5962 7.7619 1.7491 43 1 2.6060 5.2134 3.3566 44 1 2.5384 5.4322 1.5855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180580172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:10 Heat of formation + Delta-G solvation = -58.583729 kcal Electronic energy + Delta-G solvation = -22047.177779 eV Core-core repulsion = 18998.340902 eV Total energy + Delta-G solvation = -3048.836877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02947 -39.28462 -37.01972 -35.62101 -34.21307 -33.35283 -30.29212 -30.11590 -29.14573 -26.83395 -25.52258 -23.76314 -22.14188 -21.87463 -21.53697 -20.77180 -18.54548 -18.01376 -17.06023 -16.81066 -16.38248 -16.00469 -15.91550 -15.59930 -14.87735 -14.62137 -14.40234 -14.11229 -13.84863 -13.65083 -13.52384 -13.31613 -13.17767 -13.06776 -12.90932 -12.68762 -12.41292 -12.23925 -12.09439 -12.06553 -11.98463 -11.97406 -11.91204 -11.78876 -11.52706 -11.43305 -10.96428 -10.20672 -9.40442 -9.12036 -8.29550 -6.07684 1.39750 1.46948 1.58098 2.07578 2.30458 2.75486 3.04059 3.27430 3.76449 3.83635 4.04486 4.07314 4.11480 4.24606 4.30577 4.35145 4.41507 4.43416 4.55394 4.62707 4.68209 4.81195 4.86216 4.89625 4.90924 4.95281 4.97828 5.02902 5.05367 5.09137 5.14779 5.16121 5.32060 5.34163 5.37997 5.41021 5.46000 5.52236 6.06817 6.08118 6.20272 6.44087 7.15723 7.64850 8.08602 8.73806 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.007348 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.052445 B = 3809.420801 C = 5021.521884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.125 3.875 5 N -0.452 5.452 6 C -0.353 4.353 7 H 0.086 0.914 8 C 0.013 3.987 9 N -0.886 5.886 10 Si 0.973 3.027 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.469 3.531 15 O -0.619 6.619 16 C 0.090 3.910 17 H 0.053 0.947 18 C -0.119 4.119 19 N -0.530 5.530 20 C 0.038 3.962 21 C -0.117 4.117 22 C -0.133 4.133 23 C 0.050 3.950 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.272 0.728 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 8.031 2.003 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C 0.002 3.998 5 N -0.170 5.170 6 C -0.481 4.481 7 H 0.103 0.897 8 C -0.191 4.191 9 N -0.523 5.523 10 Si 0.796 3.204 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.203 1.203 14 C 0.258 3.742 15 O -0.506 6.506 16 C -0.021 4.021 17 H 0.070 0.930 18 C -0.177 4.177 19 N -0.256 5.256 20 C -0.089 4.089 21 C -0.155 4.155 22 C -0.172 4.172 23 C -0.078 4.078 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.341 7.267 2.797 8.915 hybrid contribution -0.045 0.105 -1.579 1.583 sum -4.386 7.372 1.218 8.664 Atomic orbital electron populations 1.21705 0.94063 1.02387 1.01757 1.21421 0.97210 0.95094 1.01691 1.21756 0.95398 0.97797 1.00242 1.21202 0.93263 0.84787 1.00593 1.43652 1.56268 1.12244 1.04880 1.19481 1.39481 0.98483 0.90606 0.89652 1.26124 0.92889 0.96462 1.03639 1.70088 1.27527 1.20347 1.34303 0.85200 0.78249 0.78809 0.78104 1.18357 1.20364 1.20315 1.20964 0.80423 0.89563 0.83256 1.90474 1.56671 1.70393 1.33032 1.21368 0.97524 0.92347 0.90847 0.92980 1.21530 0.92084 1.02679 1.01369 1.63316 1.06974 1.21313 1.33978 1.23191 0.98548 0.87280 0.99914 1.22685 0.92882 0.99657 1.00273 1.22780 0.99239 0.93233 1.01908 1.22657 0.88295 0.97212 0.99628 0.90990 0.93064 0.92523 0.91926 0.92558 0.94468 0.92647 0.90251 0.95368 0.91879 0.92862 0.89804 0.93340 0.93098 0.89842 0.88258 0.90412 0.89208 0.90981 0.92460 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.12 -3.94 5.93 30.60 0.18 -3.76 16 3 C -0.11 -4.79 5.53 30.60 0.17 -4.62 16 4 C 0.13 6.27 4.94 86.38 0.43 6.69 16 5 N -0.45 -23.50 2.49 -635.55 -1.58 -25.08 16 6 C -0.35 -17.86 7.91 84.04 0.66 -17.20 16 7 H 0.09 4.20 6.72 -2.91 -0.02 4.18 16 8 C 0.01 0.65 4.89 84.93 0.42 1.07 16 9 N -0.89 -46.83 11.78 21.66 0.26 -46.58 16 10 Si 0.97 38.92 29.60 68.60 2.03 40.95 16 11 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 14 C 0.47 24.18 6.02 87.66 0.53 24.71 16 15 O -0.62 -35.26 15.83 -3.07 -0.05 -35.31 16 16 C 0.09 3.89 1.37 44.17 0.06 3.95 16 17 H 0.05 2.25 6.52 -2.39 -0.02 2.24 16 18 C -0.12 -4.72 8.73 71.98 0.63 -4.10 16 19 N -0.53 -20.13 4.69 -864.73 -4.05 -24.18 16 20 C 0.04 1.06 5.44 86.77 0.47 1.53 16 21 C -0.12 -2.57 7.08 31.98 0.23 -2.34 16 22 C -0.13 -3.30 6.94 31.78 0.22 -3.08 16 23 C 0.05 1.78 6.03 86.65 0.52 2.31 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.08 4.15 5.83 -2.39 -0.01 4.14 16 32 H 0.03 1.50 7.53 -2.39 -0.02 1.48 16 33 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 34 H 0.05 2.40 7.62 -2.39 -0.02 2.38 16 35 H 0.08 2.68 6.96 -2.38 -0.02 2.66 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.36 7.27 -2.39 -0.02 1.35 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.02 0.98 7.24 -2.38 -0.02 0.96 16 Total: -1.00 -63.26 344.43 2.77 -60.49 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.94 Total: 27.68 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.23 Total: 2.03 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -5.38 Total: -95.84 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.31 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -63.26 2.77 -60.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180580172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.902 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds