Wall clock time and date at job start Mon Mar 30 2020 00:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46822 * 2 1 4 4 C 1.53006 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46824 * 55.00360 * 4 3 2 6 6 C 1.52993 * 109.47155 * 295.00068 * 4 3 2 7 7 C 1.53000 * 109.46846 * 174.99943 * 4 3 2 8 8 C 1.50703 * 109.46912 * 185.00257 * 7 4 3 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 4 11 11 C 1.47423 * 125.64665 * 359.68696 * 10 8 7 12 12 C 1.55123 * 104.72450 * 155.81937 * 11 10 8 13 13 C 1.55154 * 101.48369 * 37.29852 * 12 11 10 14 14 H 1.08997 * 110.72534 * 82.69989 * 13 12 11 15 15 N 1.46503 * 110.72110 * 205.96987 * 13 12 11 16 16 C 1.36933 * 120.00312 * 268.52032 * 15 13 12 17 17 H 1.08005 * 119.99419 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00626 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00454 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99634 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46935 * 89.99947 * 20 18 16 22 22 H 1.48504 * 109.47242 * 209.99999 * 20 18 16 23 23 H 1.48502 * 109.47239 * 330.00487 * 20 18 16 24 24 C 1.47018 * 125.65319 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.47205 * 59.99928 * 1 2 3 26 26 H 1.09003 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46746 * 299.99760 * 1 2 3 28 28 H 1.09004 * 109.46746 * 240.00240 * 2 1 3 29 29 H 1.08998 * 109.47205 * 120.00071 * 2 1 3 30 30 H 1.09004 * 109.47264 * 60.00557 * 3 2 1 31 31 H 1.08998 * 109.47289 * 300.00020 * 3 2 1 32 32 H 1.09002 * 109.47179 * 179.97438 * 6 4 3 33 33 H 1.08993 * 109.47639 * 299.99905 * 6 4 3 34 34 H 1.09004 * 109.47135 * 60.00050 * 6 4 3 35 35 H 1.09002 * 109.47398 * 305.00335 * 7 4 3 36 36 H 1.09001 * 109.47194 * 65.00515 * 7 4 3 37 37 H 1.09003 * 110.37092 * 274.75069 * 11 10 8 38 38 H 1.08999 * 110.36866 * 37.07050 * 11 10 8 39 39 H 1.09002 * 111.19286 * 279.19624 * 12 11 10 40 40 H 1.09006 * 110.94232 * 155.28926 * 12 11 10 41 41 H 0.97004 * 119.99769 * 88.51653 * 15 13 12 42 42 H 0.96996 * 119.99632 * 179.97438 * 19 18 16 43 43 H 1.09008 * 109.87927 * 300.43574 * 24 10 8 44 44 H 1.09004 * 109.88432 * 61.44111 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2480 9 8 6.1851 1.8184 -0.2358 10 7 6.2551 4.0317 -0.3706 11 6 5.6504 5.3758 -0.4052 12 6 6.7798 6.3285 0.0670 13 6 8.0273 5.6760 -0.5851 14 1 8.1281 5.9898 -1.6240 15 7 9.2377 5.9980 0.1748 16 6 9.9796 7.1009 -0.1543 17 1 9.6725 7.7332 -0.9744 18 6 11.1262 7.4065 0.5660 19 7 11.8390 8.4669 0.2500 20 14 11.6568 6.3133 1.9848 21 1 12.5586 5.2477 1.4782 22 1 12.3745 7.1294 2.9969 23 1 10.4592 5.6938 2.6071 24 6 7.7134 4.1675 -0.4989 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 5.1695 0.8327 1.3085 33 1 3.7159 1.4226 2.1498 34 1 3.7161 -0.1907 1.3978 35 1 3.6457 3.3430 -1.0109 36 1 3.7914 3.4463 0.7601 37 1 5.3394 5.6259 -1.4196 38 1 4.8014 5.4275 0.2763 39 1 6.8638 6.3319 1.1538 40 1 6.6228 7.3378 -0.3138 41 1 9.5136 5.4300 0.9111 42 1 12.6400 8.6805 0.7536 43 1 8.2040 3.7362 0.3738 44 1 8.0546 3.6629 -1.4028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181503479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:21 Heat of formation + Delta-G solvation = -45.369877 kcal Electronic energy + Delta-G solvation = -20661.652563 eV Core-core repulsion = 17613.388681 eV Total energy + Delta-G solvation = -3048.263882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04790 -37.88446 -36.58205 -34.28000 -32.89673 -31.66361 -29.90832 -28.86415 -27.23454 -26.77063 -23.69850 -22.68480 -22.03584 -20.38606 -20.11088 -18.93196 -17.78865 -16.93494 -16.16243 -15.88604 -15.26234 -14.81937 -14.38397 -14.16501 -13.94724 -13.66020 -13.57930 -13.21815 -12.67832 -12.58624 -12.43963 -12.30297 -11.98035 -11.93195 -11.71290 -11.68840 -11.47564 -11.15724 -10.92545 -10.88131 -10.76748 -10.74765 -10.63407 -10.49727 -10.12668 -9.67570 -9.56156 -9.01906 -8.46525 -7.37878 -5.84538 -3.22041 2.74868 3.10130 3.34507 3.38102 3.42717 4.42338 4.53112 4.55405 4.64828 4.85116 4.90155 4.92876 5.01832 5.14568 5.18822 5.29671 5.35286 5.44727 5.46335 5.47335 5.52657 5.56610 5.63413 5.66189 5.70855 5.78337 5.82864 5.86045 5.93524 5.96067 6.06500 6.12852 6.25630 6.26327 6.38341 6.48043 6.50242 6.75741 7.68067 7.89406 8.29873 8.33939 9.10537 9.83156 10.01379 11.33119 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042563 B = 0.003273 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.685811 B = 8553.981757 C = 8891.368316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.132 4.132 8 C 0.524 3.476 9 O -0.544 6.544 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.154 4.154 13 C 0.177 3.823 14 H 0.075 0.925 15 N -0.739 5.739 16 C -0.250 4.250 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.097 3.903 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.974 -12.349 -0.457 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.172 4.172 8 C 0.313 3.687 9 O -0.422 6.422 10 N -0.350 5.350 11 C -0.025 4.025 12 C -0.196 4.196 13 C 0.065 3.935 14 H 0.093 0.907 15 N -0.381 5.381 16 C -0.379 4.379 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.577 5.577 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.027 4.027 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.555 -12.756 -0.550 25.053 hybrid contribution 0.458 -0.492 1.077 1.270 sum -21.097 -13.247 0.527 24.917 Atomic orbital electron populations 1.21785 0.96088 1.01444 1.01686 1.21575 0.95505 0.97018 1.02287 1.21682 0.94727 0.96927 1.01930 1.20908 0.94347 0.94335 0.99871 0.90448 1.21994 1.03225 1.00055 0.95858 1.21732 0.92012 0.99459 1.03966 1.20362 0.89823 0.82281 0.76241 1.90656 1.70481 1.30260 1.50782 1.48553 1.08224 1.06196 1.72009 1.22449 0.97159 0.82018 1.00899 1.23569 0.95466 0.98617 1.01909 1.21157 0.86510 0.89653 0.96149 0.90654 1.42720 1.26739 1.31249 1.37414 1.19040 1.03571 1.01134 1.14175 0.88973 1.24671 0.97420 0.97551 0.99145 1.69695 1.18067 1.27263 1.42666 0.86578 0.78509 0.80450 0.83141 1.20900 1.21613 1.20294 1.22327 0.79741 0.98814 1.01784 0.92846 0.92936 0.92843 0.92049 0.91692 0.91960 0.92018 0.90673 0.93485 0.92837 0.89143 0.89125 0.91413 0.91209 0.90787 0.90085 0.80327 0.92913 0.91628 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.93 5.69 -26.73 -0.15 -1.09 16 3 C -0.12 -0.89 4.68 -26.73 -0.13 -1.01 16 4 C -0.08 -0.75 2.04 -90.62 -0.18 -0.94 16 5 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 6 C -0.15 -1.67 8.69 37.15 0.32 -1.35 16 7 C -0.13 -1.33 4.18 -27.88 -0.12 -1.45 16 8 C 0.52 7.56 7.57 -10.98 -0.08 7.48 16 9 O -0.54 -9.68 14.29 5.56 0.08 -9.60 16 10 N -0.62 -8.94 3.32 -170.38 -0.57 -9.51 16 11 C 0.10 1.17 6.70 -2.41 -0.02 1.16 16 12 C -0.15 -2.35 6.78 -24.47 -0.17 -2.51 16 13 C 0.18 3.21 3.61 -66.10 -0.24 2.97 16 14 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 15 N -0.74 -16.89 5.03 -51.65 -0.26 -17.15 16 16 C -0.25 -6.79 10.44 -15.06 -0.16 -6.94 16 17 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 18 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 20 Si 0.88 21.84 27.73 -169.99 -4.71 17.13 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 24 C 0.10 1.63 6.62 -3.07 -0.02 1.61 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.03 5.95 -51.93 -0.31 0.72 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.36 8.32 5.43 -40.82 -0.22 8.10 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 43 H 0.07 1.20 7.72 -51.92 -0.40 0.79 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -31.46 345.16 -8.06 -39.51 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.91 Total: 4.77 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.66 Total: -2.53 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.05 Total: -54.48 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.46 -8.06 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181503479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.857 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds