Wall clock time and date at job start Mon Mar 30 2020 00:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46822 * 2 1 4 4 C 1.53006 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46824 * 55.00360 * 4 3 2 6 6 C 1.52993 * 109.47155 * 295.00068 * 4 3 2 7 7 C 1.53000 * 109.46846 * 174.99943 * 4 3 2 8 8 C 1.50703 * 109.46912 * 185.00257 * 7 4 3 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 4 11 11 C 1.47423 * 125.64665 * 359.68696 * 10 8 7 12 12 C 1.55123 * 104.72450 * 155.81937 * 11 10 8 13 13 C 1.55154 * 101.48369 * 37.29852 * 12 11 10 14 14 H 1.08997 * 110.72534 * 82.69989 * 13 12 11 15 15 N 1.46503 * 110.72110 * 205.96987 * 13 12 11 16 16 C 1.36933 * 120.00312 * 268.52032 * 15 13 12 17 17 H 1.08005 * 119.99419 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00626 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00454 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99634 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46935 * 89.99947 * 20 18 16 22 22 H 1.48504 * 109.47242 * 209.99999 * 20 18 16 23 23 H 1.48502 * 109.47239 * 330.00487 * 20 18 16 24 24 C 1.47018 * 125.65319 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.47205 * 59.99928 * 1 2 3 26 26 H 1.09003 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46746 * 299.99760 * 1 2 3 28 28 H 1.09004 * 109.46746 * 240.00240 * 2 1 3 29 29 H 1.08998 * 109.47205 * 120.00071 * 2 1 3 30 30 H 1.09004 * 109.47264 * 60.00557 * 3 2 1 31 31 H 1.08998 * 109.47289 * 300.00020 * 3 2 1 32 32 H 1.09002 * 109.47179 * 179.97438 * 6 4 3 33 33 H 1.08993 * 109.47639 * 299.99905 * 6 4 3 34 34 H 1.09004 * 109.47135 * 60.00050 * 6 4 3 35 35 H 1.09002 * 109.47398 * 305.00335 * 7 4 3 36 36 H 1.09001 * 109.47194 * 65.00515 * 7 4 3 37 37 H 1.09003 * 110.37092 * 274.75069 * 11 10 8 38 38 H 1.08999 * 110.36866 * 37.07050 * 11 10 8 39 39 H 1.09002 * 111.19286 * 279.19624 * 12 11 10 40 40 H 1.09006 * 110.94232 * 155.28926 * 12 11 10 41 41 H 0.97004 * 119.99769 * 88.51653 * 15 13 12 42 42 H 0.96996 * 119.99632 * 179.97438 * 19 18 16 43 43 H 1.09008 * 109.87927 * 300.43574 * 24 10 8 44 44 H 1.09004 * 109.88432 * 61.44111 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2480 9 8 6.1851 1.8184 -0.2358 10 7 6.2551 4.0317 -0.3706 11 6 5.6504 5.3758 -0.4052 12 6 6.7798 6.3285 0.0670 13 6 8.0273 5.6760 -0.5851 14 1 8.1281 5.9898 -1.6240 15 7 9.2377 5.9980 0.1748 16 6 9.9796 7.1009 -0.1543 17 1 9.6725 7.7332 -0.9744 18 6 11.1262 7.4065 0.5660 19 7 11.8390 8.4669 0.2500 20 14 11.6568 6.3133 1.9848 21 1 12.5586 5.2477 1.4782 22 1 12.3745 7.1294 2.9969 23 1 10.4592 5.6938 2.6071 24 6 7.7134 4.1675 -0.4989 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 5.1695 0.8327 1.3085 33 1 3.7159 1.4226 2.1498 34 1 3.7161 -0.1907 1.3978 35 1 3.6457 3.3430 -1.0109 36 1 3.7914 3.4463 0.7601 37 1 5.3394 5.6259 -1.4196 38 1 4.8014 5.4275 0.2763 39 1 6.8638 6.3319 1.1538 40 1 6.6228 7.3378 -0.3138 41 1 9.5136 5.4300 0.9111 42 1 12.6400 8.6805 0.7536 43 1 8.2040 3.7362 0.3738 44 1 8.0546 3.6629 -1.4028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181503479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:20 Heat of formation + Delta-G solvation = -64.737688 kcal Electronic energy + Delta-G solvation = -20662.492414 eV Core-core repulsion = 17613.388681 eV Total energy + Delta-G solvation = -3049.103733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18639 -39.06575 -37.46600 -36.02058 -33.71689 -33.40896 -31.36327 -30.02673 -28.38817 -27.42884 -25.33181 -24.09234 -22.75544 -21.73986 -21.01271 -19.99335 -19.75365 -18.05628 -17.45980 -16.79186 -16.40399 -16.09007 -15.77751 -15.56786 -14.92160 -14.80731 -14.53021 -14.35017 -14.29185 -13.71855 -13.50054 -13.43299 -13.16700 -13.11931 -12.82205 -12.73269 -12.56556 -12.34788 -12.25792 -12.15506 -11.84214 -11.79809 -11.71272 -11.62967 -11.45296 -11.24899 -11.00536 -10.68842 -9.66084 -9.35441 -8.04473 -5.38849 1.36859 1.38886 1.45338 1.66080 1.98393 2.45776 3.25380 3.50353 3.52795 3.80274 3.81269 3.96251 3.98911 4.23751 4.25686 4.30293 4.37327 4.44881 4.47074 4.56040 4.64806 4.73818 4.75534 4.82231 4.85736 4.95183 4.97411 5.00489 5.08657 5.15542 5.22244 5.25586 5.29184 5.33859 5.40771 5.45272 5.57069 5.60116 5.74971 6.19270 6.58234 7.03234 7.18949 7.78438 7.96110 9.16327 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042563 B = 0.003273 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.685811 B = 8553.981757 C = 8891.368316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.057 0.943 6 C -0.152 4.152 7 C -0.123 4.123 8 C 0.517 3.483 9 O -0.585 6.585 10 N -0.618 5.618 11 C 0.106 3.894 12 C -0.147 4.147 13 C 0.167 3.833 14 H 0.072 0.928 15 N -0.746 5.746 16 C -0.228 4.228 17 H 0.067 0.933 18 C -0.059 4.059 19 N -0.979 5.979 20 Si 0.948 3.052 21 H -0.282 1.282 22 H -0.294 1.294 23 H -0.256 1.256 24 C 0.105 3.895 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.048 0.952 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.089 -12.977 0.088 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.144 4.144 4 C -0.093 4.093 5 H 0.076 0.924 6 C -0.209 4.209 7 C -0.162 4.162 8 C 0.308 3.692 9 O -0.466 6.466 10 N -0.352 5.352 11 C -0.016 4.016 12 C -0.188 4.188 13 C 0.058 3.942 14 H 0.090 0.910 15 N -0.389 5.389 16 C -0.359 4.359 17 H 0.085 0.915 18 C -0.251 4.251 19 N -0.629 5.629 20 Si 0.776 3.224 21 H -0.209 1.209 22 H -0.221 1.221 23 H -0.181 1.181 24 C -0.019 4.019 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.197 0.803 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.749 -13.405 -0.016 28.146 hybrid contribution 1.374 -0.328 0.816 1.631 sum -23.375 -13.733 0.800 27.123 Atomic orbital electron populations 1.21767 0.95150 1.01780 1.02121 1.21585 0.96317 0.96941 1.01779 1.21621 0.92596 0.97205 1.03024 1.20883 0.95986 0.94003 0.98393 0.92447 1.21950 1.00962 1.00955 0.97051 1.21805 0.88248 0.99992 1.06203 1.21244 0.91572 0.81366 0.74976 1.90650 1.71682 1.31787 1.52461 1.48660 1.07017 1.07511 1.71967 1.22583 0.96502 0.79312 1.03171 1.23396 0.94862 0.99555 1.00982 1.21360 0.86097 0.91033 0.95701 0.91034 1.42727 1.28033 1.30109 1.37998 1.19014 1.03230 1.01239 1.12379 0.91545 1.25411 0.98061 0.99260 1.02370 1.69856 1.18936 1.29637 1.44520 0.85519 0.78539 0.78451 0.79878 1.20879 1.22115 1.18121 1.22006 0.81842 0.97330 1.00747 0.92388 0.92751 0.92388 0.92692 0.92199 0.90884 0.90787 0.94037 0.92326 0.92289 0.86404 0.86863 0.88956 0.87663 0.91813 0.89568 0.80295 0.93302 0.93345 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.83 16 2 C -0.13 -1.62 5.69 30.60 0.17 -1.45 16 3 C -0.11 -1.29 4.68 30.60 0.14 -1.15 16 4 C -0.07 -1.29 2.04 -10.79 -0.02 -1.31 16 5 H 0.06 1.24 7.96 -2.39 -0.02 1.22 16 6 C -0.15 -3.09 8.69 71.98 0.63 -2.47 16 7 C -0.12 -2.04 4.18 29.85 0.12 -1.91 16 8 C 0.52 13.89 7.57 87.66 0.66 14.56 16 9 O -0.59 -20.72 14.29 -3.02 -0.04 -20.76 16 10 N -0.62 -16.49 3.32 -811.36 -2.70 -19.18 16 11 C 0.11 2.12 6.70 86.93 0.58 2.70 16 12 C -0.15 -4.14 6.78 32.06 0.22 -3.92 16 13 C 0.17 5.93 3.61 46.18 0.17 6.10 16 14 H 0.07 2.59 8.09 -2.39 -0.02 2.57 16 15 N -0.75 -33.83 5.03 -317.34 -1.60 -35.43 16 16 C -0.23 -12.53 10.44 84.03 0.88 -11.65 16 17 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 18 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 19 N -0.98 -61.76 13.97 21.65 0.30 -61.46 16 20 Si 0.95 45.54 27.73 68.60 1.90 47.44 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 24 C 0.11 3.47 6.62 86.73 0.57 4.04 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.06 0.81 6.56 -2.39 -0.02 0.79 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 1.13 5.95 -2.39 -0.01 1.12 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.09 6.56 -2.38 -0.02 1.08 16 35 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.11 1.43 7.85 -2.39 -0.02 1.42 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.45 7.48 -2.39 -0.02 1.43 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.09 2.34 8.14 -2.38 -0.02 2.33 16 41 H 0.36 16.36 5.43 -92.71 -0.50 15.85 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.05 1.76 7.72 -2.38 -0.02 1.74 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.35 345.16 3.57 -66.78 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.39 Total: 22.87 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.31 Total: -0.27 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -3.99 Total: -116.07 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -70.35 3.57 -66.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181503479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.046 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds