Wall clock time and date at job start Mon Mar 30 2020 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46463 * 305.00112 * 4 3 2 6 6 C 1.53000 * 109.46794 * 65.00079 * 4 3 2 7 7 C 1.52998 * 109.46967 * 185.00386 * 4 3 2 8 8 C 1.50700 * 109.46710 * 174.99949 * 7 4 3 9 9 O 1.21290 * 120.00274 * 359.97438 * 8 7 4 10 10 N 1.34783 * 120.00217 * 179.97438 * 8 7 4 11 11 C 1.47418 * 125.64400 * 359.69770 * 10 8 7 12 12 C 1.55127 * 104.72523 * 155.81504 * 11 10 8 13 13 C 1.55164 * 101.48439 * 37.29041 * 12 11 10 14 14 H 1.08996 * 110.71497 * 82.69832 * 13 12 11 15 15 N 1.46497 * 110.71989 * 205.97305 * 13 12 11 16 16 C 1.36937 * 119.99885 * 268.52174 * 15 13 12 17 17 H 1.08001 * 120.00267 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00254 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99823 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00309 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47092 * 60.00322 * 20 18 16 22 22 H 1.48498 * 109.47403 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47394 * 300.00335 * 20 18 16 24 24 C 1.47018 * 125.64759 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.46758 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47164 * 299.99731 * 6 4 3 34 34 H 1.08998 * 109.47082 * 60.00753 * 6 4 3 35 35 H 1.08997 * 109.47258 * 294.99443 * 7 4 3 36 36 H 1.08997 * 109.47326 * 55.00440 * 7 4 3 37 37 H 1.09004 * 110.36489 * 274.74002 * 11 10 8 38 38 H 1.08997 * 110.37414 * 37.06363 * 11 10 8 39 39 H 1.08998 * 111.18875 * 279.19331 * 12 11 10 40 40 H 1.08996 * 110.94329 * 155.28446 * 12 11 10 41 41 H 0.96997 * 120.00140 * 88.52548 * 15 13 12 42 42 H 0.96994 * 120.00039 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88610 * 300.44221 * 24 10 8 44 44 H 1.09003 * 109.88595 * 61.45633 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8332 -1.3083 7 6 4.0800 2.8796 0.1252 8 6 5.5819 2.8705 0.2481 9 8 6.1851 1.8183 0.2367 10 7 6.2551 4.0318 0.3707 11 6 5.6514 5.3765 0.3926 12 6 6.6799 6.2581 1.1485 13 6 8.0231 5.6729 0.6376 14 1 8.2884 6.1029 -0.3282 15 7 9.0905 5.8942 1.6162 16 6 9.8656 7.0206 1.5409 17 1 9.6897 7.7460 0.7604 18 6 10.8768 7.2306 2.4684 19 7 11.0909 6.3468 3.4200 20 14 11.9345 8.7668 2.3654 21 1 11.0738 9.9700 2.4944 22 1 12.9351 8.7534 3.4625 23 1 12.6359 8.7980 1.0568 24 6 7.7134 4.1674 0.4989 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 5.1694 0.8328 -1.3086 33 1 3.7161 -0.1906 -1.3979 34 1 3.7158 1.4228 -2.1499 35 1 3.7913 3.4463 -0.7600 36 1 3.6458 3.3429 1.0111 37 1 5.5073 5.7443 -0.6233 38 1 4.7024 5.3577 0.9283 39 1 6.5859 6.1359 2.2275 40 1 6.5775 7.3058 0.8656 41 1 9.2484 5.2429 2.3174 42 1 11.7977 6.4934 4.0679 43 1 8.0588 3.6346 1.3848 44 1 8.2025 3.7664 -0.3889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181503481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:23 Heat of formation + Delta-G solvation = -49.465759 kcal Electronic energy + Delta-G solvation = -20578.446540 eV Core-core repulsion = 17530.005048 eV Total energy + Delta-G solvation = -3048.441492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94533 -37.76954 -36.50026 -34.12611 -32.84657 -31.53502 -29.54345 -28.71064 -27.00103 -26.71423 -23.77303 -22.83758 -21.97872 -20.34897 -19.92901 -18.83578 -17.42013 -16.86940 -16.13955 -15.58615 -15.15092 -14.88847 -14.43341 -14.07802 -13.67661 -13.59268 -13.45275 -13.21883 -12.85895 -12.51154 -12.37689 -12.06138 -11.88805 -11.76526 -11.64095 -11.57240 -11.20018 -11.10397 -10.85329 -10.82130 -10.73026 -10.69375 -10.59177 -10.33197 -10.12312 -9.77666 -9.47652 -8.97835 -8.35611 -7.06156 -5.83227 -3.14081 2.84034 3.20403 3.40459 3.45153 3.46262 4.48687 4.53593 4.61493 4.69600 4.91520 4.95052 5.04841 5.07477 5.26986 5.29760 5.40057 5.41958 5.50891 5.51988 5.55830 5.60344 5.61769 5.69189 5.75298 5.77246 5.82319 5.95194 5.98463 6.00636 6.11126 6.13360 6.26765 6.31425 6.37674 6.43902 6.58861 6.62570 6.89003 7.63130 7.78918 8.33844 8.39739 9.45385 9.99845 10.34509 11.38891 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052669 B = 0.002972 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.489672 B = 9417.727210 C = 9567.826887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.132 4.132 8 C 0.523 3.477 9 O -0.544 6.544 10 N -0.615 5.615 11 C 0.099 3.901 12 C -0.155 4.155 13 C 0.172 3.828 14 H 0.066 0.934 15 N -0.715 5.715 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.099 3.901 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.069 0.931 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 -7.318 -7.978 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.210 4.210 7 C -0.172 4.172 8 C 0.312 3.688 9 O -0.422 6.422 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.084 0.916 15 N -0.356 5.356 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.522 -7.794 -8.011 22.495 hybrid contribution 0.606 0.806 0.287 1.048 sum -18.916 -6.988 -7.724 21.594 Atomic orbital electron populations 1.21783 0.96116 1.01422 1.01667 1.21574 0.95475 0.97044 1.02301 1.21680 0.94777 0.96900 1.01895 1.20910 0.94302 0.94409 0.99898 0.90409 1.21989 1.03241 1.00002 0.95817 1.21724 0.92168 0.99388 1.03874 1.20341 0.89762 0.82340 0.76345 1.90659 1.70469 1.30243 1.50824 1.48557 1.08454 1.06033 1.71847 1.22427 0.97337 0.82429 1.00290 1.23609 0.96606 0.98817 1.00633 1.21183 0.88389 0.90377 0.94071 0.91592 1.42363 1.35719 1.25204 1.32264 1.19180 1.09834 0.98015 1.10689 0.91003 1.24785 0.99424 0.98627 0.97857 1.69656 1.34435 1.35760 1.17913 0.86235 0.80072 0.82596 0.77046 1.21177 1.21658 1.21165 1.22327 0.79289 0.99033 1.01776 0.92843 0.92950 0.92873 0.92019 0.91704 0.92004 0.92029 0.90644 0.92871 0.93547 0.89227 0.89185 0.91685 0.91366 0.90671 0.90593 0.77936 0.93281 0.91250 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.98 5.69 -26.73 -0.15 -1.14 16 3 C -0.11 -0.94 4.68 -26.73 -0.13 -1.06 16 4 C -0.08 -0.80 2.04 -90.62 -0.18 -0.98 16 5 H 0.08 0.95 7.95 -51.93 -0.41 0.53 16 6 C -0.15 -1.69 8.69 37.16 0.32 -1.36 16 7 C -0.13 -1.42 4.18 -27.88 -0.12 -1.53 16 8 C 0.52 7.98 7.57 -10.98 -0.08 7.89 16 9 O -0.54 -10.15 14.29 5.55 0.08 -10.07 16 10 N -0.61 -9.48 3.32 -170.38 -0.57 -10.05 16 11 C 0.10 1.26 6.70 -2.41 -0.02 1.24 16 12 C -0.16 -2.49 6.78 -24.46 -0.17 -2.65 16 13 C 0.17 3.28 3.61 -66.09 -0.24 3.04 16 14 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 15 N -0.72 -17.48 5.22 -51.65 -0.27 -17.75 16 16 C -0.25 -6.63 9.96 -15.06 -0.15 -6.78 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.10 1.79 6.62 -3.06 -0.02 1.77 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 33 H 0.05 0.53 6.56 -51.93 -0.34 0.18 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.39 10.19 7.56 -40.82 -0.31 9.88 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -30.69 348.28 -8.41 -39.10 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.95 Total: 6.27 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.66 Total: -2.61 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.11 Total: -54.84 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.69 -8.41 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181503481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.366 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds