Wall clock time and date at job start Mon Mar 30 2020 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46463 * 305.00112 * 4 3 2 6 6 C 1.53000 * 109.46794 * 65.00079 * 4 3 2 7 7 C 1.52998 * 109.46967 * 185.00386 * 4 3 2 8 8 C 1.50700 * 109.46710 * 174.99949 * 7 4 3 9 9 O 1.21290 * 120.00274 * 359.97438 * 8 7 4 10 10 N 1.34783 * 120.00217 * 179.97438 * 8 7 4 11 11 C 1.47418 * 125.64400 * 359.69770 * 10 8 7 12 12 C 1.55127 * 104.72523 * 155.81504 * 11 10 8 13 13 C 1.55164 * 101.48439 * 37.29041 * 12 11 10 14 14 H 1.08996 * 110.71497 * 82.69832 * 13 12 11 15 15 N 1.46497 * 110.71989 * 205.97305 * 13 12 11 16 16 C 1.36937 * 119.99885 * 268.52174 * 15 13 12 17 17 H 1.08001 * 120.00267 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00254 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99823 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00309 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47092 * 60.00322 * 20 18 16 22 22 H 1.48498 * 109.47403 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47394 * 300.00335 * 20 18 16 24 24 C 1.47018 * 125.64759 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.46758 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47164 * 299.99731 * 6 4 3 34 34 H 1.08998 * 109.47082 * 60.00753 * 6 4 3 35 35 H 1.08997 * 109.47258 * 294.99443 * 7 4 3 36 36 H 1.08997 * 109.47326 * 55.00440 * 7 4 3 37 37 H 1.09004 * 110.36489 * 274.74002 * 11 10 8 38 38 H 1.08997 * 110.37414 * 37.06363 * 11 10 8 39 39 H 1.08998 * 111.18875 * 279.19331 * 12 11 10 40 40 H 1.08996 * 110.94329 * 155.28446 * 12 11 10 41 41 H 0.96997 * 120.00140 * 88.52548 * 15 13 12 42 42 H 0.96994 * 120.00039 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88610 * 300.44221 * 24 10 8 44 44 H 1.09003 * 109.88595 * 61.45633 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8332 -1.3083 7 6 4.0800 2.8796 0.1252 8 6 5.5819 2.8705 0.2481 9 8 6.1851 1.8183 0.2367 10 7 6.2551 4.0318 0.3707 11 6 5.6514 5.3765 0.3926 12 6 6.6799 6.2581 1.1485 13 6 8.0231 5.6729 0.6376 14 1 8.2884 6.1029 -0.3282 15 7 9.0905 5.8942 1.6162 16 6 9.8656 7.0206 1.5409 17 1 9.6897 7.7460 0.7604 18 6 10.8768 7.2306 2.4684 19 7 11.0909 6.3468 3.4200 20 14 11.9345 8.7668 2.3654 21 1 11.0738 9.9700 2.4944 22 1 12.9351 8.7534 3.4625 23 1 12.6359 8.7980 1.0568 24 6 7.7134 4.1674 0.4989 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 5.1694 0.8328 -1.3086 33 1 3.7161 -0.1906 -1.3979 34 1 3.7158 1.4228 -2.1499 35 1 3.7913 3.4463 -0.7600 36 1 3.6458 3.3429 1.0111 37 1 5.5073 5.7443 -0.6233 38 1 4.7024 5.3577 0.9283 39 1 6.5859 6.1359 2.2275 40 1 6.5775 7.3058 0.8656 41 1 9.2484 5.2429 2.3174 42 1 11.7977 6.4934 4.0679 43 1 8.0588 3.6346 1.3848 44 1 8.2025 3.7664 -0.3889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181503481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:23 Heat of formation + Delta-G solvation = -67.944583 kcal Electronic energy + Delta-G solvation = -20579.247842 eV Core-core repulsion = 17530.005048 eV Total energy + Delta-G solvation = -3049.242794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16109 -39.00226 -37.44851 -35.91092 -33.65723 -33.22598 -31.04222 -29.94100 -28.26139 -27.41761 -25.59103 -24.14359 -22.75477 -21.61296 -20.97445 -19.96713 -19.35770 -18.05627 -17.41141 -16.64192 -16.41172 -16.23187 -15.66297 -15.42167 -14.91680 -14.79907 -14.45373 -14.42261 -14.15277 -13.76000 -13.29148 -13.17537 -13.09936 -12.98027 -12.79285 -12.65663 -12.53641 -12.37163 -12.32548 -12.15583 -11.81300 -11.75433 -11.69661 -11.61355 -11.45722 -11.24269 -10.93337 -10.68452 -9.63777 -9.05639 -7.95434 -5.26154 1.48774 1.51987 1.57917 1.66859 2.00478 2.57037 3.35656 3.53620 3.77338 3.81267 3.87655 3.97492 4.05346 4.25459 4.28757 4.31112 4.41852 4.45476 4.53002 4.56794 4.68630 4.72618 4.76709 4.82899 4.87796 4.95609 4.99346 5.02513 5.08887 5.18076 5.23636 5.26126 5.29905 5.34591 5.44782 5.45923 5.52800 5.57558 5.61225 6.24799 6.60645 7.20089 7.30898 8.02958 8.26658 9.27982 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052669 B = 0.002972 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.489672 B = 9417.727210 C = 9567.826887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.075 4.075 5 H 0.052 0.948 6 C -0.150 4.150 7 C -0.122 4.122 8 C 0.515 3.485 9 O -0.587 6.587 10 N -0.617 5.617 11 C 0.106 3.894 12 C -0.146 4.146 13 C 0.165 3.835 14 H 0.072 0.928 15 N -0.732 5.732 16 C -0.241 4.241 17 H 0.084 0.916 18 C -0.078 4.078 19 N -0.973 5.973 20 Si 0.977 3.023 21 H -0.273 1.273 22 H -0.300 1.300 23 H -0.278 1.278 24 C 0.108 3.892 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.039 0.961 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.762 -5.780 -9.474 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.144 4.144 4 C -0.094 4.094 5 H 0.071 0.929 6 C -0.208 4.208 7 C -0.161 4.161 8 C 0.306 3.694 9 O -0.468 6.468 10 N -0.351 5.351 11 C -0.015 4.015 12 C -0.187 4.187 13 C 0.055 3.945 14 H 0.090 0.910 15 N -0.371 5.371 16 C -0.372 4.372 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.199 1.199 22 H -0.226 1.226 23 H -0.204 1.204 24 C -0.017 4.017 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.409 -6.229 -9.558 25.147 hybrid contribution 1.444 0.245 0.692 1.620 sum -20.965 -5.984 -8.867 23.536 Atomic orbital electron populations 1.21762 0.95069 1.01798 1.02139 1.21585 0.96378 0.96921 1.01762 1.21617 0.92501 0.97233 1.03042 1.20892 0.96069 0.93965 0.98492 0.92909 1.21936 1.00961 1.00952 0.96906 1.21797 0.88090 1.00059 1.06173 1.21296 0.91635 0.81386 0.75039 1.90651 1.71738 1.31850 1.52564 1.48676 1.07078 1.07538 1.71804 1.22590 0.97222 0.79815 1.01922 1.23409 0.95290 1.00200 0.99806 1.21399 0.88630 0.91267 0.93198 0.91009 1.42558 1.37152 1.24406 1.33001 1.19624 1.09205 0.98385 1.10006 0.89778 1.25637 1.01392 1.01830 0.98141 1.69834 1.35346 1.37967 1.19138 0.85163 0.78194 0.79351 0.76745 1.19924 1.22642 1.20357 1.21982 0.81688 0.97933 1.00050 0.92524 0.92727 0.92199 0.92944 0.92008 0.90543 0.91063 0.94052 0.92303 0.91932 0.86350 0.86892 0.88722 0.87880 0.92645 0.89181 0.79721 0.94060 0.94274 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.77 5.69 30.59 0.17 -1.59 16 3 C -0.11 -1.41 4.68 30.59 0.14 -1.27 16 4 C -0.08 -1.44 2.04 -10.79 -0.02 -1.46 16 5 H 0.05 1.27 7.95 -2.39 -0.02 1.25 16 6 C -0.15 -3.15 8.69 71.98 0.63 -2.52 16 7 C -0.12 -2.23 4.18 29.85 0.12 -2.11 16 8 C 0.52 15.12 7.57 87.66 0.66 15.78 16 9 O -0.59 -22.45 14.29 -3.06 -0.04 -22.49 16 10 N -0.62 -18.12 3.32 -811.35 -2.70 -20.82 16 11 C 0.11 2.31 6.70 86.93 0.58 2.89 16 12 C -0.15 -4.38 6.78 32.07 0.22 -4.17 16 13 C 0.16 6.23 3.61 46.18 0.17 6.40 16 14 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 15 N -0.73 -36.46 5.22 -317.32 -1.66 -38.11 16 16 C -0.24 -12.97 9.96 84.03 0.84 -12.13 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 20 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.11 3.97 6.62 86.73 0.57 4.54 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.87 6.56 -2.39 -0.02 0.86 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 1.16 5.95 -2.39 -0.01 1.14 16 33 H 0.06 1.12 6.56 -2.39 -0.02 1.11 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.62 7.85 -2.39 -0.02 1.60 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.10 1.61 7.48 -2.39 -0.02 1.60 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.37 20.44 7.56 -92.71 -0.70 19.74 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.04 1.66 7.72 -2.39 -0.02 1.64 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -69.34 348.28 3.43 -65.91 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.25 Total: 28.15 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.27 Total: -0.54 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -4.07 Total: -118.42 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.04 Total: -22.49 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.34 3.43 -65.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181503481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.037 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds