Wall clock time and date at job start Mon Mar 30 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.52996 * 109.46943 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46936 * 179.97438 * 4 3 2 6 6 C 1.37096 * 120.00115 * 270.00260 * 5 4 3 7 7 H 1.08003 * 119.99706 * 141.10310 * 6 5 4 8 8 C 1.38948 * 120.00158 * 321.10158 * 6 5 4 9 9 N 1.31410 * 120.00046 * 339.05861 * 8 6 5 10 10 Si 1.86796 * 119.99787 * 159.05772 * 8 6 5 11 11 H 1.48504 * 109.47202 * 60.00226 * 10 8 6 12 12 H 1.48500 * 109.47041 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47250 * 299.99931 * 10 8 6 14 14 C 1.34779 * 119.99645 * 90.00392 * 5 4 3 15 15 O 1.21300 * 119.99955 * 5.24722 * 14 5 4 16 16 C 1.50696 * 119.99979 * 184.97661 * 14 5 4 17 17 H 1.09001 * 112.84799 * 322.49646 * 16 14 5 18 18 C 1.53775 * 113.61825 * 93.70004 * 16 14 5 19 19 C 1.53957 * 87.02389 * 139.95171 * 18 16 14 20 20 H 1.08997 * 113.61087 * 89.19448 * 19 18 16 21 21 N 1.46894 * 113.66706 * 220.07048 * 19 18 16 22 22 C 1.46898 * 111.00160 * 164.75078 * 21 19 18 23 23 C 1.46898 * 110.99835 * 288.70123 * 21 19 18 24 24 C 1.53782 * 113.61297 * 191.30751 * 16 14 5 25 25 H 1.08996 * 109.47447 * 300.00375 * 1 2 3 26 26 H 1.09004 * 109.46855 * 60.00285 * 1 2 3 27 27 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47009 * 239.99794 * 2 1 3 29 29 H 1.08996 * 109.46651 * 119.99976 * 2 1 3 30 30 H 1.08998 * 109.46810 * 60.00135 * 3 2 1 31 31 H 1.09003 * 109.46963 * 300.00198 * 3 2 1 32 32 H 1.08998 * 109.46994 * 60.00569 * 4 3 2 33 33 H 1.08995 * 109.47511 * 300.00320 * 4 3 2 34 34 H 0.96993 * 120.00121 * 185.03277 * 9 8 6 35 35 H 1.08998 * 113.61233 * 254.53006 * 18 16 14 36 36 H 1.08993 * 113.61599 * 25.42915 * 18 16 14 37 37 H 1.08998 * 109.47546 * 59.99426 * 22 21 19 38 38 H 1.08994 * 109.47406 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47014 * 299.99902 * 22 21 19 40 40 H 1.09005 * 109.47363 * 55.74511 * 23 21 19 41 41 H 1.09002 * 109.47361 * 175.74590 * 23 21 19 42 42 H 1.09006 * 109.47193 * 295.74623 * 23 21 19 43 43 H 1.08993 * 113.61556 * 334.56552 * 24 16 14 44 44 H 1.09002 * 113.61671 * 105.46645 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2874 3.4692 -1.1875 7 1 4.0338 4.5139 -1.2919 8 6 4.8456 2.7797 -2.2569 9 7 5.5233 1.6741 -2.0439 10 14 4.6327 3.4241 -3.9971 11 1 5.2246 4.7824 -4.0979 12 1 5.3184 2.5140 -4.9494 13 1 3.1864 3.4886 -4.3277 14 6 4.2826 3.4596 1.1670 15 8 4.1719 2.8599 2.2156 16 6 4.6768 4.9141 1.1689 17 1 5.3445 5.1727 0.3470 18 6 3.4859 5.8750 1.3207 19 6 4.3844 6.7143 2.2472 20 1 4.9719 7.4668 1.7211 21 7 3.6820 7.2551 3.4185 22 6 4.6347 7.7264 4.4325 23 6 2.7555 8.3262 3.0285 24 6 5.1611 5.4193 2.5382 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 5.9744 1.2323 -2.7802 35 1 3.2147 6.3837 0.3957 36 1 2.6290 5.4316 1.8279 37 1 5.2599 8.5112 4.0067 38 1 4.0882 8.1220 5.2885 39 1 5.2631 6.8960 4.7544 40 1 2.0646 7.9519 2.2731 41 1 2.1940 8.6570 3.9023 42 1 3.3203 9.1646 2.6208 43 1 4.7632 4.8511 3.3789 44 1 6.2404 5.5608 2.5947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183372981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:53 Heat of formation + Delta-G solvation = -22.348651 kcal Electronic energy + Delta-G solvation = -21523.029109 eV Core-core repulsion = 18475.763502 eV Total energy + Delta-G solvation = -3047.265606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.58686 -37.73570 -35.42122 -34.40475 -33.85939 -31.43076 -28.60026 -27.70423 -25.93093 -24.83916 -24.80895 -23.30340 -21.68478 -20.34263 -19.24824 -18.68056 -16.97648 -15.98750 -15.19503 -15.04125 -14.73947 -14.62377 -14.60959 -14.02715 -13.87712 -13.65353 -12.87834 -12.65938 -12.31509 -12.18787 -12.00869 -11.87978 -11.81437 -11.56354 -11.44219 -11.17966 -11.03296 -10.83496 -10.69406 -10.49594 -10.44592 -10.30544 -10.17819 -10.11100 -9.73183 -9.66417 -9.04519 -8.27464 -8.20271 -7.37996 -6.33989 -4.02474 3.11965 3.20870 3.22723 3.91608 4.08503 4.17749 4.85086 4.89846 5.02104 5.17799 5.28743 5.39021 5.42169 5.51601 5.56748 5.59017 5.63668 5.66626 5.70253 5.93603 5.96519 6.04083 6.11334 6.27307 6.27586 6.33517 6.35656 6.42969 6.51687 6.52184 6.67232 6.70217 6.77537 6.87279 6.93379 7.16520 7.19443 7.37285 7.40780 7.54489 8.05306 8.43201 9.12581 9.61744 10.05181 10.68774 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.006020 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.856623 B = 4649.934793 C = 5686.741919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.114 3.886 5 N -0.439 5.439 6 C -0.339 4.339 7 H 0.087 0.913 8 C 0.046 3.954 9 N -0.860 5.860 10 Si 0.911 3.089 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.485 3.515 15 O -0.604 6.604 16 C -0.113 4.113 17 H 0.108 0.892 18 C -0.102 4.102 19 C 0.050 3.950 20 H 0.062 0.938 21 N -0.534 5.534 22 C 0.026 3.974 23 C 0.025 3.975 24 C -0.106 4.106 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.100 0.900 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 7.268 3.820 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.010 4.010 5 N -0.156 5.156 6 C -0.467 4.467 7 H 0.104 0.896 8 C -0.161 4.161 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.274 3.726 15 O -0.490 6.490 16 C -0.135 4.135 17 H 0.126 0.874 18 C -0.141 4.141 19 C -0.058 4.058 20 H 0.079 0.921 21 N -0.258 5.258 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.118 0.882 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.453 6.386 4.389 8.937 hybrid contribution 0.491 1.037 -1.493 1.883 sum -3.961 7.423 2.896 8.899 Atomic orbital electron populations 1.21758 0.96674 1.00638 1.01460 1.21435 0.94939 0.97832 1.01574 1.21900 0.98008 0.95369 1.01230 1.21357 0.91016 0.85382 1.03208 1.43382 1.55867 1.11836 1.04528 1.19304 1.42357 0.96523 0.88506 0.89560 1.25377 0.94455 0.96107 1.00117 1.69874 1.28081 1.18896 1.32794 0.86254 0.78804 0.78776 0.82364 1.19832 1.20965 1.19793 1.20135 0.79857 0.88642 0.83954 1.90501 1.57841 1.68341 1.32314 1.22260 0.98962 0.93725 0.98524 0.87396 1.22803 0.97161 0.96017 0.98069 1.23248 0.96352 0.95205 0.91040 0.92064 1.62200 1.18859 1.33148 1.11611 1.22317 0.95388 0.99310 0.95215 1.22330 0.96485 0.92545 1.00937 1.22885 0.98496 0.94553 0.98494 0.93091 0.93062 0.93455 0.92278 0.92430 0.93144 0.92285 0.88247 0.92821 0.91981 0.91667 0.89472 0.96111 0.91870 0.91130 0.91273 0.91824 0.96112 0.88188 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.06 5.93 -26.73 -0.16 -2.22 16 3 C -0.13 -2.62 5.54 -26.73 -0.15 -2.76 16 4 C 0.11 2.76 5.05 -4.04 -0.02 2.74 16 5 N -0.44 -11.11 2.51 -114.81 -0.29 -11.40 16 6 C -0.34 -8.52 8.29 -14.93 -0.12 -8.64 16 7 H 0.09 2.07 7.23 -52.48 -0.38 1.69 16 8 C 0.05 1.15 4.95 -17.47 -0.09 1.06 16 9 N -0.86 -22.79 11.53 55.50 0.64 -22.15 16 10 Si 0.91 19.33 29.60 -169.99 -5.03 14.30 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 14 C 0.49 12.00 7.13 -10.99 -0.08 11.92 16 15 O -0.60 -16.34 15.45 5.54 0.09 -16.25 16 16 C -0.11 -2.29 3.07 -90.96 -0.28 -2.57 16 17 H 0.11 2.21 7.27 -51.93 -0.38 1.84 16 18 C -0.10 -1.79 6.73 -25.83 -0.17 -1.96 16 19 C 0.05 0.77 3.17 -66.81 -0.21 0.56 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 21 N -0.53 -7.66 4.96 -242.08 -1.20 -8.86 16 22 C 0.03 0.31 9.45 60.06 0.57 0.88 16 23 C 0.03 0.30 9.53 60.06 0.57 0.88 16 24 C -0.11 -1.90 6.42 -25.92 -0.17 -2.07 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 2.55 5.60 -51.93 -0.29 2.26 16 33 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.88 7.55 -51.93 -0.39 0.48 16 40 H 0.07 0.84 7.58 -51.93 -0.39 0.44 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.10 2.00 7.35 -51.93 -0.38 1.62 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -28.66 350.87 -8.52 -37.18 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.07 Total: 5.83 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 0.06 Total: -3.95 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.85 Total: -42.40 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.66 -8.52 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183372981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.834 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds