Wall clock time and date at job start Mon Mar 30 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.52996 * 109.46943 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46936 * 179.97438 * 4 3 2 6 6 C 1.37096 * 120.00115 * 270.00260 * 5 4 3 7 7 H 1.08003 * 119.99706 * 141.10310 * 6 5 4 8 8 C 1.38948 * 120.00158 * 321.10158 * 6 5 4 9 9 N 1.31410 * 120.00046 * 339.05861 * 8 6 5 10 10 Si 1.86796 * 119.99787 * 159.05772 * 8 6 5 11 11 H 1.48504 * 109.47202 * 60.00226 * 10 8 6 12 12 H 1.48500 * 109.47041 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47250 * 299.99931 * 10 8 6 14 14 C 1.34779 * 119.99645 * 90.00392 * 5 4 3 15 15 O 1.21300 * 119.99955 * 5.24722 * 14 5 4 16 16 C 1.50696 * 119.99979 * 184.97661 * 14 5 4 17 17 H 1.09001 * 112.84799 * 322.49646 * 16 14 5 18 18 C 1.53775 * 113.61825 * 93.70004 * 16 14 5 19 19 C 1.53957 * 87.02389 * 139.95171 * 18 16 14 20 20 H 1.08997 * 113.61087 * 89.19448 * 19 18 16 21 21 N 1.46894 * 113.66706 * 220.07048 * 19 18 16 22 22 C 1.46898 * 111.00160 * 164.75078 * 21 19 18 23 23 C 1.46898 * 110.99835 * 288.70123 * 21 19 18 24 24 C 1.53782 * 113.61297 * 191.30751 * 16 14 5 25 25 H 1.08996 * 109.47447 * 300.00375 * 1 2 3 26 26 H 1.09004 * 109.46855 * 60.00285 * 1 2 3 27 27 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47009 * 239.99794 * 2 1 3 29 29 H 1.08996 * 109.46651 * 119.99976 * 2 1 3 30 30 H 1.08998 * 109.46810 * 60.00135 * 3 2 1 31 31 H 1.09003 * 109.46963 * 300.00198 * 3 2 1 32 32 H 1.08998 * 109.46994 * 60.00569 * 4 3 2 33 33 H 1.08995 * 109.47511 * 300.00320 * 4 3 2 34 34 H 0.96993 * 120.00121 * 185.03277 * 9 8 6 35 35 H 1.08998 * 113.61233 * 254.53006 * 18 16 14 36 36 H 1.08993 * 113.61599 * 25.42915 * 18 16 14 37 37 H 1.08998 * 109.47546 * 59.99426 * 22 21 19 38 38 H 1.08994 * 109.47406 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47014 * 299.99902 * 22 21 19 40 40 H 1.09005 * 109.47363 * 55.74511 * 23 21 19 41 41 H 1.09002 * 109.47361 * 175.74590 * 23 21 19 42 42 H 1.09006 * 109.47193 * 295.74623 * 23 21 19 43 43 H 1.08993 * 113.61556 * 334.56552 * 24 16 14 44 44 H 1.09002 * 113.61671 * 105.46645 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2874 3.4692 -1.1875 7 1 4.0338 4.5139 -1.2919 8 6 4.8456 2.7797 -2.2569 9 7 5.5233 1.6741 -2.0439 10 14 4.6327 3.4241 -3.9971 11 1 5.2246 4.7824 -4.0979 12 1 5.3184 2.5140 -4.9494 13 1 3.1864 3.4886 -4.3277 14 6 4.2826 3.4596 1.1670 15 8 4.1719 2.8599 2.2156 16 6 4.6768 4.9141 1.1689 17 1 5.3445 5.1727 0.3470 18 6 3.4859 5.8750 1.3207 19 6 4.3844 6.7143 2.2472 20 1 4.9719 7.4668 1.7211 21 7 3.6820 7.2551 3.4185 22 6 4.6347 7.7264 4.4325 23 6 2.7555 8.3262 3.0285 24 6 5.1611 5.4193 2.5382 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 5.9744 1.2323 -2.7802 35 1 3.2147 6.3837 0.3957 36 1 2.6290 5.4316 1.8279 37 1 5.2599 8.5112 4.0067 38 1 4.0882 8.1220 5.2885 39 1 5.2631 6.8960 4.7544 40 1 2.0646 7.9519 2.2731 41 1 2.1940 8.6570 3.9023 42 1 3.3203 9.1646 2.6208 43 1 4.7632 4.8511 3.3789 44 1 6.2404 5.5608 2.5947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183372981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:53 Heat of formation + Delta-G solvation = -38.672985 kcal Electronic energy + Delta-G solvation = -21523.736985 eV Core-core repulsion = 18475.763502 eV Total energy + Delta-G solvation = -3047.973483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20556 -39.34676 -37.12875 -35.84508 -35.48430 -33.37258 -30.22706 -28.69633 -27.39806 -26.70046 -26.18927 -24.71480 -23.09527 -21.92898 -20.95416 -20.26561 -18.67406 -17.85270 -16.70813 -16.59719 -16.36565 -16.10847 -15.82821 -15.61594 -15.39421 -14.99899 -14.34713 -14.32031 -13.79673 -13.62721 -13.41145 -13.13948 -13.11374 -13.06296 -12.82827 -12.66769 -12.52192 -12.37076 -12.22535 -12.05982 -11.99058 -11.96269 -11.80376 -11.58464 -11.42544 -11.13427 -10.94275 -10.20547 -9.37013 -9.24848 -8.27168 -6.02703 1.43329 1.49809 1.57643 2.04042 2.34107 2.90777 3.06462 3.24321 3.59500 3.76168 3.99806 4.05237 4.07860 4.18798 4.29606 4.32531 4.48852 4.52591 4.64027 4.71303 4.72599 4.77367 4.83879 4.84309 4.87682 4.92653 4.99414 5.02062 5.04825 5.06778 5.08633 5.17067 5.27197 5.36119 5.42454 5.47221 5.49793 5.59514 6.11003 6.17944 6.21067 6.47020 7.16375 7.66052 8.10227 8.76678 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.006020 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.856623 B = 4649.934793 C = 5686.741919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.115 3.885 5 N -0.450 5.450 6 C -0.353 4.353 7 H 0.098 0.902 8 C 0.004 3.996 9 N -0.896 5.896 10 Si 0.981 3.019 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.469 3.531 15 O -0.639 6.639 16 C -0.120 4.120 17 H 0.107 0.893 18 C -0.093 4.093 19 C 0.073 3.927 20 H 0.081 0.919 21 N -0.556 5.556 22 C 0.026 3.974 23 C 0.026 3.974 24 C -0.103 4.103 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.272 0.728 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 9.202 2.942 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.151 4.151 4 C -0.009 4.009 5 N -0.167 5.167 6 C -0.480 4.480 7 H 0.115 0.885 8 C -0.199 4.199 9 N -0.533 5.533 10 Si 0.805 3.195 11 H -0.185 1.185 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.260 3.740 15 O -0.527 6.527 16 C -0.141 4.141 17 H 0.125 0.875 18 C -0.132 4.132 19 C -0.036 4.036 20 H 0.099 0.901 21 N -0.281 5.281 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.320 8.337 3.514 10.496 hybrid contribution 0.795 0.385 -1.155 1.454 sum -4.525 8.722 2.359 10.105 Atomic orbital electron populations 1.21707 0.93994 1.02387 1.01817 1.21419 0.97242 0.95148 1.01645 1.21752 0.95275 0.97762 1.00304 1.21323 0.93363 0.85140 1.01101 1.43680 1.55846 1.12072 1.05102 1.19652 1.42597 0.97195 0.88545 0.88454 1.26238 0.93639 0.96191 1.03836 1.69997 1.29016 1.20311 1.33997 0.85177 0.78833 0.78504 0.77035 1.18523 1.21133 1.19185 1.20970 0.79255 0.90491 0.83303 1.90461 1.59345 1.69590 1.33341 1.22315 1.00725 0.91161 0.99945 0.87474 1.22710 0.95738 0.95508 0.99239 1.22996 0.95041 0.94420 0.91119 0.90091 1.62133 1.19674 1.34881 1.11408 1.22352 0.95307 0.99306 0.95202 1.22374 0.96102 0.92103 1.01630 1.22790 0.99548 0.95717 0.96059 0.92936 0.92524 0.91027 0.92061 0.92564 0.94395 0.92575 0.89710 0.95278 0.91886 0.90034 0.91348 0.94819 0.90221 0.92091 0.91773 0.90330 0.94790 0.90733 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.12 -3.98 5.93 30.60 0.18 -3.80 16 3 C -0.11 -4.75 5.54 30.59 0.17 -4.58 16 4 C 0.11 5.79 5.05 86.38 0.44 6.23 16 5 N -0.45 -23.48 2.51 -635.54 -1.59 -25.08 16 6 C -0.35 -17.81 8.29 84.04 0.70 -17.11 16 7 H 0.10 4.60 7.23 -2.91 -0.02 4.58 16 8 C 0.00 0.20 4.95 84.93 0.42 0.62 16 9 N -0.90 -48.26 11.53 21.66 0.25 -48.01 16 10 Si 0.98 39.00 29.60 68.60 2.03 41.03 16 11 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 12 H -0.29 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 14 C 0.47 24.01 7.13 87.66 0.62 24.64 16 15 O -0.64 -36.22 15.45 -3.09 -0.05 -36.26 16 16 C -0.12 -4.90 3.07 -11.02 -0.03 -4.93 16 17 H 0.11 4.37 7.27 -2.39 -0.02 4.35 16 18 C -0.09 -3.20 6.73 31.18 0.21 -2.99 16 19 C 0.07 2.13 3.17 45.50 0.14 2.27 16 20 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 21 N -0.56 -14.86 4.96 -919.82 -4.56 -19.42 16 22 C 0.03 0.57 9.45 127.69 1.21 1.78 16 23 C 0.03 0.54 9.53 127.69 1.22 1.76 16 24 C -0.10 -3.68 6.42 31.12 0.20 -3.48 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 4.53 5.60 -2.39 -0.01 4.51 16 33 H 0.03 1.56 7.36 -2.39 -0.02 1.54 16 34 H 0.27 13.80 8.32 -92.71 -0.77 13.03 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 37 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.44 7.55 -2.39 -0.02 1.42 16 40 H 0.06 1.41 7.58 -2.38 -0.02 1.39 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.07 3.07 7.35 -2.39 -0.02 3.05 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -63.20 350.87 3.20 -60.01 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.94 Total: 30.47 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 6.19 Total: -2.73 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -5.91 Total: -92.51 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.05 Total: -36.26 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -63.20 3.20 -60.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183372981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.333 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds