Wall clock time and date at job start Mon Mar 30 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46822 * 2 1 4 4 C 1.53004 * 109.47017 * 185.00332 * 3 2 1 5 5 H 1.08995 * 109.47306 * 55.80357 * 4 3 2 6 6 C 1.52997 * 109.46762 * 295.80500 * 4 3 2 7 7 C 1.53001 * 109.47271 * 297.18268 * 6 4 3 8 8 C 1.50701 * 109.46935 * 175.80556 * 4 3 2 9 9 O 1.21280 * 119.99926 * 11.09298 * 8 4 3 10 10 N 1.34778 * 119.99850 * 191.36515 * 8 4 3 11 11 C 1.47014 * 125.64962 * 5.18433 * 10 8 4 12 12 C 1.54319 * 107.27528 * 181.02186 * 11 10 8 13 13 C 1.55160 * 102.94055 * 22.19397 * 12 11 10 14 14 H 1.09001 * 111.00593 * 82.61126 * 13 12 11 15 15 N 1.46503 * 111.00460 * 206.42779 * 13 12 11 16 16 C 1.36936 * 119.99762 * 273.54336 * 15 13 12 17 17 H 1.08003 * 120.00157 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00079 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47227 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47142 * 119.99765 * 20 18 16 23 23 H 1.48499 * 109.47376 * 239.99943 * 20 18 16 24 24 C 1.47421 * 125.64626 * 184.87785 * 10 8 4 25 25 H 1.08993 * 109.47272 * 300.00008 * 1 2 3 26 26 H 1.09003 * 109.47298 * 60.00397 * 1 2 3 27 27 H 1.09007 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47092 * 240.00278 * 2 1 3 29 29 H 1.08994 * 109.47421 * 119.99874 * 2 1 3 30 30 H 1.09004 * 109.46989 * 64.99948 * 3 2 1 31 31 H 1.09001 * 109.47167 * 305.00289 * 3 2 1 32 32 H 1.08995 * 109.47424 * 57.18328 * 6 4 3 33 33 H 1.09004 * 109.46830 * 177.18755 * 6 4 3 34 34 H 1.09001 * 109.47130 * 305.15318 * 7 6 4 35 35 H 1.08991 * 109.47034 * 65.15072 * 7 6 4 36 36 H 1.09000 * 109.47479 * 185.15588 * 7 6 4 37 37 H 1.09005 * 109.88629 * 300.44080 * 11 10 8 38 38 H 1.09007 * 109.88366 * 61.60060 * 11 10 8 39 39 H 1.09002 * 110.72541 * 140.55343 * 12 11 10 40 40 H 1.08999 * 110.72125 * 263.82983 * 12 11 10 41 41 H 0.96994 * 120.00165 * 93.54623 * 15 13 12 42 42 H 0.97004 * 120.00017 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.36492 * 274.74421 * 24 10 8 44 44 H 1.09001 * 110.37232 * 37.06656 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4445 -0.1258 5 1 3.8563 0.8923 -1.0192 6 6 4.1790 0.7797 1.1077 7 6 3.8280 1.5945 2.3542 8 6 4.0585 2.8645 -0.2294 9 8 3.3036 3.7869 -0.0051 10 7 5.3374 3.1097 -0.5768 11 6 6.3236 2.0983 -0.9842 12 6 7.6501 2.8368 -1.2605 13 6 7.4925 4.1496 -0.4486 14 1 7.7505 3.9945 0.5990 15 7 8.2969 5.2268 -1.0307 16 6 9.6103 5.3714 -0.6713 17 1 10.0531 4.6915 0.0415 18 6 10.3724 6.3923 -1.2225 19 7 9.8324 7.2218 -2.0901 20 14 12.1639 6.5899 -0.7317 21 1 12.5262 5.5391 0.2531 22 1 13.0242 6.4589 -1.9350 23 1 12.3655 7.9291 -0.1225 24 6 5.9774 4.4371 -0.6172 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7515 1.9299 0.9314 31 1 1.6052 1.9816 -0.8418 32 1 3.7834 -0.2307 1.2109 33 1 5.2623 0.7361 0.9954 34 1 4.1428 2.6284 2.2130 35 1 2.7510 1.5618 2.5182 36 1 4.3402 1.1737 3.2195 37 1 6.4633 1.3727 -0.1828 38 1 5.9848 1.5935 -1.8890 39 1 8.4977 2.2570 -0.8953 40 1 7.7577 3.0515 -2.3237 41 1 7.8992 5.8377 -1.6707 42 1 10.3651 7.9350 -2.4755 43 1 5.7851 4.9219 -1.5744 44 1 5.6159 5.0577 0.2027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186631497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:26 Heat of formation + Delta-G solvation = -47.108128 kcal Electronic energy + Delta-G solvation = -21161.364266 eV Core-core repulsion = 18113.025008 eV Total energy + Delta-G solvation = -3048.339258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20611 -37.67968 -36.20352 -34.16745 -33.07618 -31.42803 -29.54102 -29.08287 -27.77624 -25.17503 -23.77090 -23.17798 -22.34495 -20.44064 -20.05941 -18.56728 -17.32189 -16.79300 -16.08930 -15.82075 -15.50697 -14.68929 -14.26574 -14.14090 -13.74053 -13.53156 -13.21370 -13.19790 -12.85269 -12.72063 -12.37646 -12.19372 -11.95232 -11.92174 -11.62854 -11.37735 -11.20063 -11.13942 -11.03587 -10.87038 -10.74000 -10.66293 -10.53507 -10.26932 -10.04223 -9.78748 -9.47665 -8.98048 -8.36707 -7.06176 -5.83902 -3.14534 2.82011 3.18358 3.39499 3.45379 3.47543 4.47205 4.53270 4.56110 4.72185 4.94728 4.98200 5.03754 5.05643 5.12236 5.27614 5.35875 5.44932 5.47282 5.51531 5.57611 5.60904 5.64029 5.72313 5.73946 5.78592 5.86322 5.92939 5.98120 6.03840 6.12060 6.14153 6.17463 6.24994 6.33844 6.38525 6.56589 6.61906 6.90740 7.64193 7.78060 8.33198 8.37437 9.45164 9.99420 10.34310 11.38390 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044445 B = 0.003500 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.834467 B = 7997.778080 C = 8144.766580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.116 4.116 7 C -0.156 4.156 8 C 0.532 3.468 9 O -0.546 6.546 10 N -0.613 5.613 11 C 0.100 3.900 12 C -0.155 4.155 13 C 0.172 3.828 14 H 0.063 0.937 15 N -0.716 5.716 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.099 3.901 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -16.626 4.288 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.125 4.125 5 H 0.108 0.892 6 C -0.154 4.154 7 C -0.213 4.213 8 C 0.321 3.679 9 O -0.424 6.424 10 N -0.347 5.347 11 C -0.023 4.023 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.081 0.919 15 N -0.356 5.356 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.024 4.024 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.934 -16.120 4.505 21.779 hybrid contribution 1.015 0.308 -0.169 1.073 sum -12.920 -15.812 4.336 20.875 Atomic orbital electron populations 1.21762 0.95869 1.01346 1.01970 1.21587 0.95876 0.96787 1.01971 1.21471 0.92431 0.96505 1.03603 1.21369 0.97392 0.93393 1.00379 0.89177 1.21553 1.00951 0.99336 0.93521 1.21844 1.01726 1.00595 0.97137 1.20234 0.80260 0.91254 0.76196 1.90683 1.54367 1.46563 1.50776 1.48471 1.10259 1.09512 1.66472 1.22166 0.89720 0.91489 0.98970 1.23416 0.94249 0.99301 1.02687 1.21339 0.88017 0.88473 0.96131 0.91949 1.42273 1.09138 1.32734 1.51458 1.19247 0.86566 1.10933 1.20664 0.90941 1.24778 0.98497 0.98001 0.99452 1.69677 1.35858 1.19455 1.32767 0.86099 0.84815 0.77519 0.77609 1.20488 1.21799 1.21787 1.22550 0.93749 0.84036 1.02042 0.92721 0.92733 0.92916 0.92108 0.91767 0.90734 0.91534 0.90744 0.91197 0.92397 0.92298 0.92639 0.91702 0.92172 0.90759 0.90576 0.77941 0.93398 0.91454 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.99 5.55 -26.73 -0.15 -1.14 16 3 C -0.10 -1.08 3.81 -26.73 -0.10 -1.18 16 4 C -0.10 -1.15 1.90 -91.77 -0.17 -1.32 16 5 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 6 C -0.12 -1.10 5.43 -26.73 -0.15 -1.25 16 7 C -0.16 -1.66 9.31 37.16 0.35 -1.31 16 8 C 0.53 8.14 5.61 -10.98 -0.06 8.08 16 9 O -0.55 -10.31 16.30 5.56 0.09 -10.22 16 10 N -0.61 -9.44 3.32 -170.38 -0.57 -10.01 16 11 C 0.10 1.30 6.19 -3.07 -0.02 1.28 16 12 C -0.16 -2.50 6.64 -24.90 -0.17 -2.66 16 13 C 0.17 3.31 3.70 -65.66 -0.24 3.07 16 14 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 15 N -0.72 -17.40 5.28 -51.23 -0.27 -17.67 16 16 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.10 1.79 6.51 -2.41 -0.02 1.77 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 6.73 -51.93 -0.35 0.12 16 30 H 0.07 0.86 6.37 -51.93 -0.33 0.53 16 31 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.07 0.57 6.52 -51.93 -0.34 0.23 16 33 H 0.07 0.67 5.86 -51.93 -0.30 0.36 16 34 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 35 H 0.06 0.59 6.67 -51.93 -0.35 0.25 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.72 6.00 -51.93 -0.31 0.41 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.39 10.06 7.71 -40.82 -0.31 9.74 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 44 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -30.64 343.19 -8.15 -38.79 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.67 Total: 6.46 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.61 Total: -2.52 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.11 Total: -54.57 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.64 -8.15 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186631497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.318 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds