Wall clock time and date at job start Mon Mar 30 2020 00:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46822 * 2 1 4 4 C 1.53004 * 109.47017 * 185.00332 * 3 2 1 5 5 H 1.08995 * 109.47306 * 55.80357 * 4 3 2 6 6 C 1.52997 * 109.46762 * 295.80500 * 4 3 2 7 7 C 1.53001 * 109.47271 * 297.18268 * 6 4 3 8 8 C 1.50701 * 109.46935 * 175.80556 * 4 3 2 9 9 O 1.21280 * 119.99926 * 11.09298 * 8 4 3 10 10 N 1.34778 * 119.99850 * 191.36515 * 8 4 3 11 11 C 1.47014 * 125.64962 * 5.18433 * 10 8 4 12 12 C 1.54319 * 107.27528 * 181.02186 * 11 10 8 13 13 C 1.55160 * 102.94055 * 22.19397 * 12 11 10 14 14 H 1.09001 * 111.00593 * 82.61126 * 13 12 11 15 15 N 1.46503 * 111.00460 * 206.42779 * 13 12 11 16 16 C 1.36936 * 119.99762 * 273.54336 * 15 13 12 17 17 H 1.08003 * 120.00157 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00079 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47227 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47142 * 119.99765 * 20 18 16 23 23 H 1.48499 * 109.47376 * 239.99943 * 20 18 16 24 24 C 1.47421 * 125.64626 * 184.87785 * 10 8 4 25 25 H 1.08993 * 109.47272 * 300.00008 * 1 2 3 26 26 H 1.09003 * 109.47298 * 60.00397 * 1 2 3 27 27 H 1.09007 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47092 * 240.00278 * 2 1 3 29 29 H 1.08994 * 109.47421 * 119.99874 * 2 1 3 30 30 H 1.09004 * 109.46989 * 64.99948 * 3 2 1 31 31 H 1.09001 * 109.47167 * 305.00289 * 3 2 1 32 32 H 1.08995 * 109.47424 * 57.18328 * 6 4 3 33 33 H 1.09004 * 109.46830 * 177.18755 * 6 4 3 34 34 H 1.09001 * 109.47130 * 305.15318 * 7 6 4 35 35 H 1.08991 * 109.47034 * 65.15072 * 7 6 4 36 36 H 1.09000 * 109.47479 * 185.15588 * 7 6 4 37 37 H 1.09005 * 109.88629 * 300.44080 * 11 10 8 38 38 H 1.09007 * 109.88366 * 61.60060 * 11 10 8 39 39 H 1.09002 * 110.72541 * 140.55343 * 12 11 10 40 40 H 1.08999 * 110.72125 * 263.82983 * 12 11 10 41 41 H 0.96994 * 120.00165 * 93.54623 * 15 13 12 42 42 H 0.97004 * 120.00017 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.36492 * 274.74421 * 24 10 8 44 44 H 1.09001 * 110.37232 * 37.06656 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4445 -0.1258 5 1 3.8563 0.8923 -1.0192 6 6 4.1790 0.7797 1.1077 7 6 3.8280 1.5945 2.3542 8 6 4.0585 2.8645 -0.2294 9 8 3.3036 3.7869 -0.0051 10 7 5.3374 3.1097 -0.5768 11 6 6.3236 2.0983 -0.9842 12 6 7.6501 2.8368 -1.2605 13 6 7.4925 4.1496 -0.4486 14 1 7.7505 3.9945 0.5990 15 7 8.2969 5.2268 -1.0307 16 6 9.6103 5.3714 -0.6713 17 1 10.0531 4.6915 0.0415 18 6 10.3724 6.3923 -1.2225 19 7 9.8324 7.2218 -2.0901 20 14 12.1639 6.5899 -0.7317 21 1 12.5262 5.5391 0.2531 22 1 13.0242 6.4589 -1.9350 23 1 12.3655 7.9291 -0.1225 24 6 5.9774 4.4371 -0.6172 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7515 1.9299 0.9314 31 1 1.6052 1.9816 -0.8418 32 1 3.7834 -0.2307 1.2109 33 1 5.2623 0.7361 0.9954 34 1 4.1428 2.6284 2.2130 35 1 2.7510 1.5618 2.5182 36 1 4.3402 1.1737 3.2195 37 1 6.4633 1.3727 -0.1828 38 1 5.9848 1.5935 -1.8890 39 1 8.4977 2.2570 -0.8953 40 1 7.7577 3.0515 -2.3237 41 1 7.8992 5.8377 -1.6707 42 1 10.3651 7.9350 -2.4755 43 1 5.7851 4.9219 -1.5744 44 1 5.6159 5.0577 0.2027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186631497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:25 Heat of formation + Delta-G solvation = -65.899399 kcal Electronic energy + Delta-G solvation = -21162.179116 eV Core-core repulsion = 18113.025008 eV Total energy + Delta-G solvation = -3049.154108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40321 -38.98599 -37.21777 -35.94562 -33.91032 -33.14136 -31.02145 -30.04407 -29.16780 -26.31371 -25.29433 -24.47447 -23.25552 -21.66570 -21.28444 -19.67019 -19.29252 -17.96679 -17.37606 -16.80197 -16.68366 -16.30209 -15.51519 -15.43525 -14.93964 -14.76629 -14.42918 -14.36555 -14.15736 -13.76918 -13.47777 -13.36535 -13.11144 -13.03742 -12.95441 -12.71886 -12.68880 -12.33678 -12.12192 -12.07013 -11.89887 -11.81356 -11.74366 -11.65872 -11.44639 -11.25084 -10.96454 -10.68437 -9.65109 -9.06103 -7.95935 -5.26443 1.48775 1.49741 1.59561 1.63168 1.95952 2.56673 3.34261 3.48393 3.71448 3.76229 3.89724 3.90386 4.05822 4.22406 4.24109 4.27615 4.30345 4.39131 4.44968 4.50424 4.66914 4.68651 4.73436 4.78059 4.85315 4.94226 4.97812 5.02020 5.10238 5.18254 5.20620 5.23877 5.25423 5.28755 5.40095 5.43282 5.45681 5.53636 5.58803 6.24761 6.57560 7.15418 7.31275 8.02544 8.26726 9.27751 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044445 B = 0.003500 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.834467 B = 7997.778080 C = 8144.766580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.096 4.096 5 H 0.116 0.884 6 C -0.111 4.111 7 C -0.156 4.156 8 C 0.526 3.474 9 O -0.591 6.591 10 N -0.614 5.614 11 C 0.106 3.894 12 C -0.145 4.145 13 C 0.167 3.833 14 H 0.061 0.939 15 N -0.731 5.731 16 C -0.238 4.238 17 H 0.082 0.918 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.297 1.297 24 C 0.108 3.892 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.052 0.948 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -20.214 4.946 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.117 4.117 5 H 0.134 0.866 6 C -0.148 4.148 7 C -0.213 4.213 8 C 0.317 3.683 9 O -0.472 6.472 10 N -0.347 5.347 11 C -0.016 4.016 12 C -0.185 4.185 13 C 0.057 3.943 14 H 0.079 0.921 15 N -0.370 5.370 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.221 1.221 23 H -0.225 1.225 24 C -0.017 4.017 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.749 -19.787 5.188 24.647 hybrid contribution 0.854 1.421 -0.326 1.690 sum -12.895 -18.367 4.862 22.962 Atomic orbital electron populations 1.21782 0.95790 1.02122 1.01482 1.21557 0.95947 0.94741 1.03247 1.21443 0.92196 0.98182 1.01955 1.21455 0.97527 0.90301 1.02407 0.86642 1.21600 1.01359 1.00262 0.91625 1.21841 1.02017 0.98797 0.98652 1.21167 0.79522 0.92832 0.74783 1.90661 1.55504 1.48434 1.52587 1.48562 1.10893 1.08729 1.66536 1.22301 0.87157 0.90779 1.01392 1.23210 0.96776 0.97505 1.01028 1.21487 0.87872 0.88749 0.96221 0.92085 1.42441 1.09015 1.34034 1.51535 1.19642 0.87510 1.10216 1.19548 0.89989 1.25602 1.02656 0.98343 1.00228 1.69838 1.37249 1.20393 1.34649 0.85055 0.79945 0.77339 0.77292 1.18614 1.22067 1.22462 1.22217 0.93349 0.85618 1.00475 0.93213 0.93364 0.91458 0.90798 0.90347 0.92399 0.93430 0.87596 0.90522 0.95949 0.92130 0.91183 0.88527 0.89417 0.89477 0.92034 0.79492 0.94030 0.92952 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.50 5.55 30.59 0.17 -1.33 16 3 C -0.10 -1.94 3.81 30.60 0.12 -1.83 16 4 C -0.10 -1.86 1.90 -11.54 -0.02 -1.88 16 5 H 0.12 1.72 7.90 -2.39 -0.02 1.70 16 6 C -0.11 -1.70 5.43 30.59 0.17 -1.53 16 7 C -0.16 -3.03 9.31 71.98 0.67 -2.36 16 8 C 0.53 15.71 5.61 87.66 0.49 16.20 16 9 O -0.59 -22.98 16.30 -3.03 -0.05 -23.03 16 10 N -0.61 -18.23 3.32 -811.36 -2.70 -20.93 16 11 C 0.11 2.40 6.19 86.73 0.54 2.94 16 12 C -0.14 -4.37 6.64 31.78 0.21 -4.16 16 13 C 0.17 6.38 3.70 46.46 0.17 6.56 16 14 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 15 N -0.73 -36.18 5.28 -316.00 -1.67 -37.85 16 16 C -0.24 -12.78 9.98 84.03 0.84 -11.94 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 20 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 C 0.11 3.97 6.51 86.93 0.57 4.53 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.80 6.73 -2.39 -0.02 0.79 16 30 H 0.06 1.31 6.37 -2.39 -0.02 1.30 16 31 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.11 1.04 6.52 -2.39 -0.02 1.03 16 33 H 0.08 1.10 5.86 -2.39 -0.01 1.08 16 34 H 0.02 0.58 6.92 -2.39 -0.02 0.56 16 35 H 0.06 1.14 6.67 -2.39 -0.02 1.12 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.67 6.00 -2.38 -0.01 1.65 16 38 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.37 20.19 7.71 -92.71 -0.71 19.48 16 42 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 43 H 0.05 2.07 8.00 -2.38 -0.02 2.05 16 44 H 0.05 2.21 8.09 -2.39 -0.02 2.19 16 Total: -1.00 -68.82 343.19 3.25 -65.57 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.25 Total: 27.68 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.10 Total: 0.10 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.08 Total: -117.64 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.82 3.25 -65.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186631497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.325 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds