Wall clock time and date at job start Mon Mar 30 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 C 1.52991 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47590 * 304.99972 * 4 3 2 6 6 C 1.53005 * 109.47137 * 64.99773 * 4 3 2 7 7 C 1.50698 * 109.47319 * 185.00048 * 4 3 2 8 8 O 1.21279 * 119.99729 * 0.02562 * 7 4 3 9 9 N 1.34783 * 120.00239 * 180.02562 * 7 4 3 10 10 C 1.47430 * 125.64673 * 0.03486 * 9 7 4 11 11 C 1.54903 * 104.83153 * 204.09654 * 10 9 7 12 12 C 1.55156 * 101.58282 * 322.99479 * 11 10 9 13 13 H 1.09006 * 110.87178 * 277.06788 * 12 11 10 14 14 N 1.46504 * 110.72387 * 153.86553 * 12 11 10 15 15 C 1.46498 * 119.99748 * 306.47902 * 14 12 11 16 16 C 1.36939 * 119.99985 * 126.47394 * 14 12 11 17 17 H 1.07995 * 120.00012 * 343.29526 * 16 14 12 18 18 C 1.38813 * 119.99532 * 163.56852 * 16 14 12 19 19 N 1.31613 * 120.00005 * 343.86810 * 18 16 14 20 20 Si 1.86799 * 119.99672 * 163.87069 * 18 16 14 21 21 H 1.48495 * 109.47482 * 59.99557 * 20 18 16 22 22 H 1.48505 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47012 * 299.99676 * 20 18 16 24 24 C 1.47014 * 125.64918 * 180.02562 * 9 7 4 25 25 H 1.08998 * 109.47256 * 300.00274 * 1 2 3 26 26 H 1.08999 * 109.47060 * 60.00287 * 1 2 3 27 27 H 1.08997 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47751 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47060 * 119.99712 * 2 1 3 30 30 H 1.09008 * 109.47168 * 59.99719 * 3 2 1 31 31 H 1.08999 * 109.46905 * 299.99808 * 3 2 1 32 32 H 1.08998 * 109.46686 * 60.00210 * 6 4 3 33 33 H 1.08995 * 109.47127 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.47406 * 300.00389 * 6 4 3 35 35 H 1.08998 * 110.36444 * 322.93499 * 10 9 7 36 36 H 1.09002 * 110.36223 * 85.14667 * 10 9 7 37 37 H 1.09004 * 111.00568 * 204.91741 * 11 10 9 38 38 H 1.09000 * 111.00811 * 81.06529 * 11 10 9 39 39 H 1.09000 * 109.46726 * 264.71024 * 15 14 12 40 40 H 1.08997 * 109.47051 * 24.70790 * 15 14 12 41 41 H 1.08998 * 109.47171 * 144.71241 * 15 14 12 42 42 H 0.97006 * 119.99862 * 179.97438 * 19 18 16 43 43 H 1.09008 * 109.88589 * 59.55462 * 24 9 7 44 44 H 1.09009 * 110.01152 * 298.46102 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0722 2.8580 0.1245 8 8 3.2840 3.7762 0.2048 9 7 5.3973 3.1034 0.1460 10 6 6.4610 2.0865 0.0562 11 6 7.6937 2.7419 0.7276 12 6 7.5499 4.2174 0.2700 13 1 7.9637 4.3564 -0.7288 14 7 8.1936 5.1218 1.2261 15 6 7.8401 5.0584 2.6464 16 6 9.1259 6.0261 0.7921 17 1 9.5855 5.9047 -0.1775 18 6 9.4841 7.0958 1.6011 19 7 8.7264 7.4300 2.6240 20 14 11.0416 8.0609 1.2377 21 1 10.9514 8.6531 -0.1211 22 1 11.1980 9.1445 2.2411 23 1 12.2142 7.1520 1.3047 24 6 6.0213 4.4294 0.2625 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7175 1.4220 -2.1484 33 1 5.1704 0.8331 -1.3061 34 1 3.7172 -0.1911 -1.3960 35 1 6.1702 1.1848 0.5951 36 1 6.6747 1.8522 -0.9866 37 1 8.6201 2.3055 0.3541 38 1 7.6359 2.6621 1.8131 39 1 7.0733 5.8021 2.8633 40 1 7.4595 4.0646 2.8821 41 1 8.7244 5.2616 3.2503 42 1 8.9770 8.1773 3.1895 43 1 5.7085 4.9061 1.1916 44 1 5.7376 5.0512 -0.5867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189459700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:08 Heat of formation + Delta-G solvation = -23.976679 kcal Electronic energy + Delta-G solvation = -21307.885524 eV Core-core repulsion = 18260.549321 eV Total energy + Delta-G solvation = -3047.336203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00776 -37.66011 -35.89703 -34.82946 -32.37431 -31.32754 -29.67668 -27.93697 -26.68799 -26.06166 -24.60468 -22.80987 -22.27544 -20.78023 -19.23848 -18.80646 -17.06691 -16.75043 -15.79781 -15.55918 -15.31577 -14.81217 -14.17523 -13.96690 -13.61714 -13.34260 -13.20653 -12.94091 -12.57031 -12.42975 -12.29262 -12.13192 -11.97937 -11.80048 -11.50744 -11.28493 -11.03841 -10.96343 -10.85075 -10.75824 -10.63243 -10.56378 -10.42276 -10.29093 -9.89485 -9.80137 -9.41626 -8.55817 -8.25298 -6.89033 -5.76303 -3.18251 2.91638 3.28304 3.37924 3.43729 3.44560 4.45678 4.54393 4.64734 4.79153 4.99046 5.02955 5.07679 5.16710 5.24117 5.26427 5.43636 5.50397 5.52508 5.59584 5.65244 5.71173 5.73505 5.78701 5.86363 5.88097 5.98113 5.99589 6.01928 6.21080 6.29365 6.33788 6.37166 6.55647 6.69873 6.82987 6.86725 7.38083 7.68731 7.79161 7.88213 8.31667 8.47482 9.18098 9.81689 10.28168 11.28739 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.003691 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.726099 B = 7584.851870 C = 7823.459530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.152 4.152 7 C 0.525 3.475 8 O -0.547 6.547 9 N -0.612 5.612 10 C 0.102 3.898 11 C -0.155 4.155 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.587 5.587 15 C 0.161 3.839 16 C -0.260 4.260 17 H 0.072 0.928 18 C 0.002 3.998 19 N -0.906 5.906 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.085 3.915 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.028 0.972 40 H 0.001 0.999 41 H 0.049 0.951 42 H 0.254 0.746 43 H 0.071 0.929 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 -16.741 -5.445 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.128 4.128 5 H 0.111 0.889 6 C -0.209 4.209 7 C 0.313 3.687 8 O -0.425 6.425 9 N -0.346 5.346 10 C -0.021 4.021 11 C -0.195 4.195 12 C 0.063 3.937 13 H 0.096 0.904 14 N -0.308 5.308 15 C 0.017 3.983 16 C -0.390 4.390 17 H 0.090 0.910 18 C -0.197 4.197 19 N -0.550 5.550 20 Si 0.737 3.263 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.039 4.039 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.020 0.980 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.298 -16.069 -5.245 19.292 hybrid contribution 0.814 0.655 -0.081 1.048 sum -8.484 -15.414 -5.326 18.382 Atomic orbital electron populations 1.21760 0.95875 1.01318 1.02006 1.21598 0.95909 0.96805 1.01951 1.21427 0.92462 0.96400 1.03531 1.21269 0.97470 0.93723 1.00317 0.88906 1.21961 1.02027 1.00944 0.95950 1.20332 0.80815 0.91126 0.76400 1.90684 1.54538 1.46711 1.50536 1.48566 1.04701 1.09561 1.71768 1.22393 0.88033 0.91549 1.00173 1.23369 0.96103 0.98477 1.01534 1.21322 0.89024 0.89005 0.94373 0.90415 1.43979 1.45089 1.39340 1.02379 1.20828 0.99672 0.94124 0.83674 1.19220 1.13650 1.03080 1.03004 0.90982 1.24928 0.99104 0.97076 0.98578 1.70116 1.36548 1.28926 1.19452 0.86297 0.83339 0.79281 0.77401 1.20934 1.21639 1.21079 1.22914 0.95868 0.83191 1.01959 0.92685 0.92736 0.92931 0.91805 0.92093 0.91155 0.91381 0.92255 0.91425 0.91508 0.91332 0.91507 0.90397 0.90368 0.95412 0.98048 0.93181 0.93585 0.91062 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.06 5.69 -26.73 -0.15 -1.21 16 3 C -0.10 -1.13 4.03 -26.73 -0.11 -1.24 16 4 C -0.11 -1.24 2.07 -91.77 -0.19 -1.43 16 5 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 6 C -0.15 -1.42 8.76 37.16 0.33 -1.10 16 7 C 0.53 8.68 7.22 -10.98 -0.08 8.60 16 8 O -0.55 -11.30 16.25 5.56 0.09 -11.21 16 9 N -0.61 -10.02 3.32 -170.52 -0.57 -10.59 16 10 C 0.10 1.31 5.14 -2.53 -0.01 1.30 16 11 C -0.15 -2.40 6.59 -24.59 -0.16 -2.56 16 12 C 0.17 3.40 3.45 -66.10 -0.23 3.17 16 13 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 14 N -0.59 -14.34 2.94 -171.39 -0.50 -14.84 16 15 C 0.16 3.94 7.80 59.85 0.47 4.41 16 16 C -0.26 -6.99 9.68 -15.06 -0.15 -7.14 16 17 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 18 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 19 N -0.91 -26.31 10.51 55.49 0.58 -25.73 16 20 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.09 1.69 6.51 -3.07 -0.02 1.67 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.90 7.95 -51.92 -0.41 0.49 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.61 4.99 -51.93 -0.26 0.35 16 34 H 0.07 0.49 6.57 -51.93 -0.34 0.15 16 35 H 0.07 0.73 7.36 -51.93 -0.38 0.34 16 36 H 0.07 0.74 7.07 -51.93 -0.37 0.38 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.30 6.05 -51.93 -0.31 0.99 16 39 H 0.03 0.75 7.44 -51.93 -0.39 0.36 16 40 H 0.00 0.02 6.03 -51.93 -0.31 -0.29 16 41 H 0.05 1.32 6.98 -51.93 -0.36 0.95 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.07 1.63 7.13 -51.92 -0.37 1.26 16 44 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -31.20 336.94 -7.97 -39.16 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.59 Total: -2.03 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.03 Total: 3.57 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.49 Total: -51.16 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.20 -7.97 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189459700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.188 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds