Wall clock time and date at job start Mon Mar 30 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 C 1.52991 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47590 * 304.99972 * 4 3 2 6 6 C 1.53005 * 109.47137 * 64.99773 * 4 3 2 7 7 C 1.50698 * 109.47319 * 185.00048 * 4 3 2 8 8 O 1.21279 * 119.99729 * 0.02562 * 7 4 3 9 9 N 1.34783 * 120.00239 * 180.02562 * 7 4 3 10 10 C 1.47430 * 125.64673 * 0.03486 * 9 7 4 11 11 C 1.54903 * 104.83153 * 204.09654 * 10 9 7 12 12 C 1.55156 * 101.58282 * 322.99479 * 11 10 9 13 13 H 1.09006 * 110.87178 * 277.06788 * 12 11 10 14 14 N 1.46504 * 110.72387 * 153.86553 * 12 11 10 15 15 C 1.46498 * 119.99748 * 306.47902 * 14 12 11 16 16 C 1.36939 * 119.99985 * 126.47394 * 14 12 11 17 17 H 1.07995 * 120.00012 * 343.29526 * 16 14 12 18 18 C 1.38813 * 119.99532 * 163.56852 * 16 14 12 19 19 N 1.31613 * 120.00005 * 343.86810 * 18 16 14 20 20 Si 1.86799 * 119.99672 * 163.87069 * 18 16 14 21 21 H 1.48495 * 109.47482 * 59.99557 * 20 18 16 22 22 H 1.48505 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47012 * 299.99676 * 20 18 16 24 24 C 1.47014 * 125.64918 * 180.02562 * 9 7 4 25 25 H 1.08998 * 109.47256 * 300.00274 * 1 2 3 26 26 H 1.08999 * 109.47060 * 60.00287 * 1 2 3 27 27 H 1.08997 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47751 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47060 * 119.99712 * 2 1 3 30 30 H 1.09008 * 109.47168 * 59.99719 * 3 2 1 31 31 H 1.08999 * 109.46905 * 299.99808 * 3 2 1 32 32 H 1.08998 * 109.46686 * 60.00210 * 6 4 3 33 33 H 1.08995 * 109.47127 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.47406 * 300.00389 * 6 4 3 35 35 H 1.08998 * 110.36444 * 322.93499 * 10 9 7 36 36 H 1.09002 * 110.36223 * 85.14667 * 10 9 7 37 37 H 1.09004 * 111.00568 * 204.91741 * 11 10 9 38 38 H 1.09000 * 111.00811 * 81.06529 * 11 10 9 39 39 H 1.09000 * 109.46726 * 264.71024 * 15 14 12 40 40 H 1.08997 * 109.47051 * 24.70790 * 15 14 12 41 41 H 1.08998 * 109.47171 * 144.71241 * 15 14 12 42 42 H 0.97006 * 119.99862 * 179.97438 * 19 18 16 43 43 H 1.09008 * 109.88589 * 59.55462 * 24 9 7 44 44 H 1.09009 * 110.01152 * 298.46102 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0722 2.8580 0.1245 8 8 3.2840 3.7762 0.2048 9 7 5.3973 3.1034 0.1460 10 6 6.4610 2.0865 0.0562 11 6 7.6937 2.7419 0.7276 12 6 7.5499 4.2174 0.2700 13 1 7.9637 4.3564 -0.7288 14 7 8.1936 5.1218 1.2261 15 6 7.8401 5.0584 2.6464 16 6 9.1259 6.0261 0.7921 17 1 9.5855 5.9047 -0.1775 18 6 9.4841 7.0958 1.6011 19 7 8.7264 7.4300 2.6240 20 14 11.0416 8.0609 1.2377 21 1 10.9514 8.6531 -0.1211 22 1 11.1980 9.1445 2.2411 23 1 12.2142 7.1520 1.3047 24 6 6.0213 4.4294 0.2625 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7175 1.4220 -2.1484 33 1 5.1704 0.8331 -1.3061 34 1 3.7172 -0.1911 -1.3960 35 1 6.1702 1.1848 0.5951 36 1 6.6747 1.8522 -0.9866 37 1 8.6201 2.3055 0.3541 38 1 7.6359 2.6621 1.8131 39 1 7.0733 5.8021 2.8633 40 1 7.4595 4.0646 2.8821 41 1 8.7244 5.2616 3.2503 42 1 8.9770 8.1773 3.1895 43 1 5.7085 4.9061 1.1916 44 1 5.7376 5.0512 -0.5867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189459700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:08 Heat of formation + Delta-G solvation = -42.980641 kcal Electronic energy + Delta-G solvation = -21308.709598 eV Core-core repulsion = 18260.549321 eV Total energy + Delta-G solvation = -3048.160277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31410 -39.11119 -36.87779 -36.59292 -33.68757 -32.71285 -31.14977 -29.42392 -28.10607 -27.47434 -25.91856 -24.35139 -23.44283 -21.66762 -20.86426 -20.01422 -18.97247 -18.03998 -17.34081 -16.73074 -16.63833 -16.19156 -15.56532 -15.12097 -14.97147 -14.76598 -14.51400 -14.30397 -13.92363 -13.78241 -13.36493 -13.33484 -13.15036 -13.01929 -12.80065 -12.71507 -12.39720 -12.37576 -12.24324 -12.14220 -12.10017 -11.82395 -11.78191 -11.67125 -11.41050 -11.37985 -10.73211 -10.61444 -9.64248 -8.90419 -7.84915 -5.29202 1.47579 1.50015 1.56784 1.63277 2.00044 2.51432 3.26802 3.48248 3.57523 3.80204 3.84336 3.98596 4.04067 4.26168 4.32462 4.34216 4.39016 4.39773 4.44696 4.64802 4.68755 4.76668 4.81573 4.88564 4.92391 4.97544 5.04047 5.06716 5.12811 5.20434 5.23372 5.26859 5.32093 5.35219 5.43415 5.46382 5.53515 5.61056 5.69791 6.27116 6.60451 7.10359 7.16795 7.83185 8.25783 9.18986 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.003691 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.726099 B = 7584.851870 C = 7823.459530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.096 4.096 5 H 0.118 0.882 6 C -0.147 4.147 7 C 0.515 3.485 8 O -0.601 6.601 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.142 4.142 12 C 0.166 3.834 13 H 0.084 0.916 14 N -0.603 5.603 15 C 0.182 3.818 16 C -0.265 4.265 17 H 0.082 0.918 18 C -0.058 4.058 19 N -0.943 5.943 20 Si 0.973 3.027 21 H -0.276 1.276 22 H -0.299 1.299 23 H -0.274 1.274 24 C 0.096 3.904 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.066 0.934 39 H -0.011 1.011 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.247 0.753 43 H 0.030 0.970 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -20.337 -6.931 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.117 4.117 5 H 0.135 0.865 6 C -0.204 4.204 7 C 0.306 3.694 8 O -0.482 6.482 9 N -0.345 5.345 10 C -0.016 4.016 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.102 0.898 14 N -0.325 5.325 15 C 0.037 3.963 16 C -0.395 4.395 17 H 0.100 0.900 18 C -0.253 4.253 19 N -0.590 5.590 20 Si 0.801 3.199 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.200 1.200 24 C -0.030 4.030 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.007 0.993 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.458 -19.734 -6.771 22.512 hybrid contribution 0.475 1.763 0.338 1.857 sum -7.983 -17.971 -6.433 20.690 Atomic orbital electron populations 1.21785 0.95808 1.02186 1.01450 1.21565 0.95977 0.94572 1.03344 1.21412 0.92512 0.98203 1.01594 1.21338 0.97369 0.90208 1.02779 0.86457 1.21983 1.02685 1.02064 0.93678 1.21423 0.80219 0.92877 0.74872 1.90659 1.55893 1.48877 1.52786 1.48658 1.05620 1.08829 1.71415 1.22680 0.85331 0.91266 1.02341 1.23250 0.98764 0.95002 1.01108 1.21568 0.88031 0.90816 0.93909 0.89805 1.44188 1.45464 1.39819 1.02982 1.20465 0.97309 0.94522 0.84000 1.19657 1.13712 1.03030 1.03113 0.90007 1.25762 1.02060 0.98584 0.98884 1.70310 1.38253 1.29607 1.20794 0.85244 0.79897 0.77688 0.77026 1.20173 1.22533 1.19982 1.22481 0.96479 0.85029 0.99031 0.93548 0.93141 0.91291 0.90006 0.90909 0.93654 0.93008 0.93440 0.90290 0.88524 0.87593 0.88440 0.87888 0.91494 0.99251 0.95014 0.95653 0.94357 0.95185 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -1.63 5.69 30.59 0.17 -1.46 16 3 C -0.10 -2.11 4.03 30.59 0.12 -1.99 16 4 C -0.10 -1.97 2.07 -11.54 -0.02 -2.00 16 5 H 0.12 1.90 7.85 -2.39 -0.02 1.88 16 6 C -0.15 -2.13 8.76 71.98 0.63 -1.50 16 7 C 0.52 16.71 7.22 87.66 0.63 17.34 16 8 O -0.60 -25.81 16.25 -3.03 -0.05 -25.86 16 9 N -0.61 -19.24 3.32 -811.79 -2.70 -21.94 16 10 C 0.11 2.25 5.14 86.85 0.45 2.70 16 11 C -0.14 -3.95 6.59 31.98 0.21 -3.74 16 12 C 0.17 6.36 3.45 46.18 0.16 6.52 16 13 H 0.08 3.11 7.89 -2.38 -0.02 3.09 16 14 N -0.60 -29.80 2.94 -696.15 -2.05 -31.84 16 15 C 0.18 9.19 7.80 127.77 1.00 10.18 16 16 C -0.27 -14.34 9.68 84.03 0.81 -13.53 16 17 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 18 C -0.06 -3.28 5.06 84.86 0.43 -2.85 16 19 N -0.94 -56.92 10.51 21.65 0.23 -56.69 16 20 Si 0.97 44.99 29.58 68.60 2.03 47.02 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 C 0.10 3.88 6.51 86.73 0.56 4.44 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.87 6.57 -2.39 -0.02 0.86 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 1.17 7.95 -2.38 -0.02 1.16 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.98 4.99 -2.39 -0.01 0.96 16 34 H 0.10 0.88 6.57 -2.39 -0.02 0.87 16 35 H 0.11 1.60 7.36 -2.39 -0.02 1.58 16 36 H 0.10 1.60 7.07 -2.39 -0.02 1.59 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.04 6.05 -2.39 -0.01 2.03 16 39 H -0.01 -0.63 7.44 -2.39 -0.02 -0.64 16 40 H 0.03 1.37 6.03 -2.39 -0.01 1.35 16 41 H 0.02 1.37 6.98 -2.39 -0.02 1.35 16 42 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 43 H 0.03 1.45 7.13 -2.38 -0.02 1.43 16 44 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -72.74 336.94 4.29 -68.45 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.96 Total: 8.19 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.87 Total: 12.68 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.52 Total: -110.47 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.74 4.29 -68.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189459700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.469 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds