Wall clock time and date at job start Mon Mar 30 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47348 * 2 1 4 4 C 1.53006 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46734 * 54.99946 * 4 3 2 6 6 C 1.52994 * 109.46942 * 294.99889 * 4 3 2 7 7 C 1.50694 * 109.46916 * 174.99671 * 4 3 2 8 8 O 1.21285 * 120.00246 * 0.02562 * 7 4 3 9 9 N 1.34771 * 120.00059 * 179.97438 * 7 4 3 10 10 C 1.47425 * 125.64827 * 0.03319 * 9 7 4 11 11 C 1.54907 * 104.83632 * 155.84591 * 10 9 7 12 12 C 1.55157 * 101.58096 * 37.00574 * 11 10 9 13 13 H 1.09007 * 110.71557 * 82.86607 * 12 11 10 14 14 N 1.46502 * 110.72346 * 206.13491 * 12 11 10 15 15 C 1.46495 * 119.99740 * 53.52385 * 14 12 11 16 16 C 1.36937 * 119.99887 * 233.52661 * 14 12 11 17 17 H 1.07995 * 119.99976 * 324.62079 * 16 14 12 18 18 C 1.38814 * 119.99692 * 144.62207 * 16 14 12 19 19 N 1.31624 * 119.99877 * 157.55980 * 18 16 14 20 20 Si 1.86793 * 120.00080 * 337.55761 * 18 16 14 21 21 H 1.48503 * 109.47022 * 95.54702 * 20 18 16 22 22 H 1.48505 * 109.47339 * 215.54314 * 20 18 16 23 23 H 1.48493 * 109.47395 * 335.54649 * 20 18 16 24 24 C 1.47023 * 125.65100 * 180.02562 * 9 7 4 25 25 H 1.09004 * 109.47259 * 300.00004 * 1 2 3 26 26 H 1.09002 * 109.47350 * 60.00186 * 1 2 3 27 27 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47043 * 239.99529 * 2 1 3 29 29 H 1.09004 * 109.46924 * 120.00452 * 2 1 3 30 30 H 1.08995 * 109.46756 * 59.99591 * 3 2 1 31 31 H 1.08995 * 109.46754 * 299.99771 * 3 2 1 32 32 H 1.08997 * 109.46918 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47335 * 299.99873 * 6 4 3 34 34 H 1.09001 * 109.47187 * 60.00261 * 6 4 3 35 35 H 1.08995 * 110.36960 * 274.68440 * 10 9 7 36 36 H 1.09004 * 110.36612 * 37.00524 * 10 9 7 37 37 H 1.08996 * 111.00781 * 155.08583 * 11 10 9 38 38 H 1.09008 * 111.00427 * 278.93746 * 11 10 9 39 39 H 1.08998 * 109.47059 * 88.19194 * 15 14 12 40 40 H 1.08999 * 109.46978 * 208.19000 * 15 14 12 41 41 H 1.08998 * 109.47063 * 328.18830 * 15 14 12 42 42 H 0.96993 * 120.00071 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88131 * 300.49996 * 24 9 7 44 44 H 1.08993 * 109.88088 * 61.51198 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 4.0724 2.8577 -0.1233 8 8 3.2844 3.7762 -0.2037 9 7 5.3975 3.1031 -0.1437 10 6 6.4611 2.0862 -0.0542 11 6 7.6938 2.7414 -0.7255 12 6 7.5502 4.2170 -0.2678 13 1 7.9638 4.3526 0.7316 14 7 8.1941 5.1213 -1.2238 15 6 7.8404 5.0582 -2.6440 16 6 9.1264 6.0255 -0.7898 17 1 9.0151 6.4941 0.1768 18 6 10.2146 6.3397 -1.5924 19 7 10.8541 7.4769 -1.4183 20 14 10.7712 5.1487 -2.9194 21 1 10.1660 5.5372 -4.2186 22 1 12.2515 5.1888 -3.0312 23 1 10.3388 3.7735 -2.5633 24 6 6.0217 4.4293 -0.2591 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9562 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 5.1694 0.8326 1.3085 33 1 3.7158 1.4226 2.1498 34 1 3.7161 -0.1907 1.3978 35 1 6.6763 1.8531 0.9886 36 1 6.1701 1.1845 -0.5931 37 1 8.6202 2.3049 -0.3522 38 1 7.6359 2.6618 -1.8111 39 1 6.9886 5.7108 -2.8357 40 1 8.6898 5.3835 -3.2447 41 1 7.5798 4.0334 -2.9083 42 1 11.6147 7.6963 -1.9788 43 1 5.7087 4.9067 -1.1877 44 1 5.7357 5.0488 0.5908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189459701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:11 Heat of formation + Delta-G solvation = -20.277018 kcal Electronic energy + Delta-G solvation = -21373.369706 eV Core-core repulsion = 18326.193933 eV Total energy + Delta-G solvation = -3047.175774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13341 -37.83247 -35.98146 -35.01394 -32.42758 -31.61666 -30.09696 -28.33873 -26.77282 -26.21978 -24.75994 -22.93902 -22.38076 -20.85451 -19.38817 -18.92280 -17.03575 -16.88294 -16.14176 -15.69152 -15.40876 -15.04905 -14.37557 -14.02648 -13.93793 -13.42570 -13.21310 -13.07256 -12.94451 -12.50639 -12.41888 -12.25712 -12.24891 -12.04777 -11.86741 -11.51355 -11.33808 -11.12303 -11.01665 -10.90265 -10.82904 -10.69382 -10.54777 -10.21301 -9.96602 -9.61122 -9.53434 -8.59036 -8.38809 -6.96057 -6.05241 -3.46702 2.80271 3.16436 3.27062 3.42135 3.46417 4.44319 4.46653 4.57761 4.72831 4.79240 4.96269 4.97321 5.05139 5.10932 5.14990 5.26467 5.38831 5.43656 5.47582 5.57118 5.60727 5.67560 5.69149 5.73612 5.79313 5.86775 5.92091 5.95742 6.08465 6.14930 6.21157 6.22898 6.32616 6.39052 6.50257 6.61084 6.69408 6.77673 7.74560 7.95447 8.29461 8.35547 8.88485 9.63134 10.01250 11.10065 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.003900 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.936482 B = 7177.224194 C = 7284.394428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.152 4.152 7 C 0.527 3.473 8 O -0.546 6.546 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.159 4.159 12 C 0.173 3.827 13 H 0.088 0.912 14 N -0.596 5.596 15 C 0.107 3.893 16 C -0.274 4.274 17 H 0.082 0.918 18 C 0.035 3.965 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.287 1.287 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.088 3.912 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.018 0.982 40 H 0.047 0.953 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.069 0.931 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 -17.434 3.065 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.128 4.128 5 H 0.111 0.889 6 C -0.209 4.209 7 C 0.315 3.685 8 O -0.424 6.424 9 N -0.347 5.347 10 C -0.022 4.022 11 C -0.199 4.199 12 C 0.063 3.937 13 H 0.107 0.893 14 N -0.318 5.318 15 C -0.037 4.037 16 C -0.402 4.402 17 H 0.100 0.900 18 C -0.166 4.166 19 N -0.539 5.539 20 Si 0.716 3.284 21 H -0.215 1.215 22 H -0.231 1.231 23 H -0.194 1.194 24 C -0.036 4.036 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.826 -16.796 2.970 21.956 hybrid contribution 0.518 -0.574 -0.893 1.181 sum -13.308 -17.370 2.077 21.980 Atomic orbital electron populations 1.21761 0.95840 1.01363 1.02004 1.21598 0.95941 0.96757 1.01982 1.21428 0.92385 0.96466 1.03532 1.21270 0.97520 0.93571 1.00398 0.88887 1.21964 1.02060 1.01023 0.95887 1.20331 0.80671 0.91212 0.76271 1.90687 1.54529 1.46693 1.50513 1.48531 1.04819 1.09379 1.71955 1.22417 0.87850 0.91522 1.00448 1.23420 0.96520 0.98668 1.01302 1.21453 0.89343 0.87819 0.95057 0.89346 1.44003 1.45962 1.39658 1.02211 1.21350 0.98610 0.97855 0.85910 1.18808 1.00109 1.15628 1.05690 0.90039 1.25423 0.96277 0.96457 0.98442 1.69870 1.22406 1.20689 1.40902 0.86828 0.76572 0.83400 0.81562 1.21541 1.23072 1.19412 1.22687 0.95460 0.83449 1.02036 0.92704 0.92706 0.92900 0.92103 0.91764 0.91337 0.91175 0.91399 0.92180 0.91449 0.91201 0.91196 0.90036 0.90706 0.96367 0.93504 0.94863 0.92585 0.91238 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.10 -1.05 4.03 -26.73 -0.11 -1.16 16 4 C -0.11 -1.15 2.07 -91.77 -0.19 -1.34 16 5 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 6 C -0.15 -1.34 8.76 37.15 0.33 -1.01 16 7 C 0.53 8.10 7.21 -10.99 -0.08 8.02 16 8 O -0.55 -10.56 16.25 5.55 0.09 -10.47 16 9 N -0.61 -9.31 3.32 -170.53 -0.57 -9.88 16 10 C 0.10 1.23 5.13 -2.53 -0.01 1.22 16 11 C -0.16 -2.42 6.61 -24.58 -0.16 -2.59 16 12 C 0.17 3.22 3.44 -66.09 -0.23 3.00 16 13 H 0.09 1.66 7.95 -51.93 -0.41 1.25 16 14 N -0.60 -13.75 2.53 -171.39 -0.43 -14.18 16 15 C 0.11 2.32 8.47 59.84 0.51 2.83 16 16 C -0.27 -7.48 9.89 -15.06 -0.15 -7.63 16 17 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 18 C 0.03 0.98 5.31 -17.43 -0.09 0.89 16 19 N -0.90 -27.06 13.97 55.49 0.78 -26.29 16 20 Si 0.89 21.79 24.94 -169.99 -4.24 17.55 16 21 H -0.29 -6.94 6.67 56.52 0.38 -6.56 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.09 1.58 6.51 -3.06 -0.02 1.56 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 32 H 0.07 0.57 4.99 -51.93 -0.26 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 35 H 0.07 0.74 7.07 -51.93 -0.37 0.37 16 36 H 0.07 0.70 7.36 -51.93 -0.38 0.32 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.20 6.00 -51.92 -0.31 0.89 16 39 H 0.02 0.39 7.83 -51.93 -0.41 -0.02 16 40 H 0.05 1.10 3.07 -51.93 -0.16 0.94 16 41 H 0.03 0.63 5.98 -51.93 -0.31 0.32 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 1.38 6.97 -51.93 -0.36 1.02 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -31.62 332.60 -6.79 -38.41 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.44 Total: -2.03 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 0.01 Total: 1.87 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.22 Total: -50.35 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.24 Total: 17.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.62 -6.79 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189459701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.136 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds