Wall clock time and date at job start Mon Mar 30 2020 00:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47348 * 2 1 4 4 C 1.53006 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46734 * 54.99946 * 4 3 2 6 6 C 1.52994 * 109.46942 * 294.99889 * 4 3 2 7 7 C 1.50694 * 109.46916 * 174.99671 * 4 3 2 8 8 O 1.21285 * 120.00246 * 0.02562 * 7 4 3 9 9 N 1.34771 * 120.00059 * 179.97438 * 7 4 3 10 10 C 1.47425 * 125.64827 * 0.03319 * 9 7 4 11 11 C 1.54907 * 104.83632 * 155.84591 * 10 9 7 12 12 C 1.55157 * 101.58096 * 37.00574 * 11 10 9 13 13 H 1.09007 * 110.71557 * 82.86607 * 12 11 10 14 14 N 1.46502 * 110.72346 * 206.13491 * 12 11 10 15 15 C 1.46495 * 119.99740 * 53.52385 * 14 12 11 16 16 C 1.36937 * 119.99887 * 233.52661 * 14 12 11 17 17 H 1.07995 * 119.99976 * 324.62079 * 16 14 12 18 18 C 1.38814 * 119.99692 * 144.62207 * 16 14 12 19 19 N 1.31624 * 119.99877 * 157.55980 * 18 16 14 20 20 Si 1.86793 * 120.00080 * 337.55761 * 18 16 14 21 21 H 1.48503 * 109.47022 * 95.54702 * 20 18 16 22 22 H 1.48505 * 109.47339 * 215.54314 * 20 18 16 23 23 H 1.48493 * 109.47395 * 335.54649 * 20 18 16 24 24 C 1.47023 * 125.65100 * 180.02562 * 9 7 4 25 25 H 1.09004 * 109.47259 * 300.00004 * 1 2 3 26 26 H 1.09002 * 109.47350 * 60.00186 * 1 2 3 27 27 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47043 * 239.99529 * 2 1 3 29 29 H 1.09004 * 109.46924 * 120.00452 * 2 1 3 30 30 H 1.08995 * 109.46756 * 59.99591 * 3 2 1 31 31 H 1.08995 * 109.46754 * 299.99771 * 3 2 1 32 32 H 1.08997 * 109.46918 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47335 * 299.99873 * 6 4 3 34 34 H 1.09001 * 109.47187 * 60.00261 * 6 4 3 35 35 H 1.08995 * 110.36960 * 274.68440 * 10 9 7 36 36 H 1.09004 * 110.36612 * 37.00524 * 10 9 7 37 37 H 1.08996 * 111.00781 * 155.08583 * 11 10 9 38 38 H 1.09008 * 111.00427 * 278.93746 * 11 10 9 39 39 H 1.08998 * 109.47059 * 88.19194 * 15 14 12 40 40 H 1.08999 * 109.46978 * 208.19000 * 15 14 12 41 41 H 1.08998 * 109.47063 * 328.18830 * 15 14 12 42 42 H 0.96993 * 120.00071 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88131 * 300.49996 * 24 9 7 44 44 H 1.08993 * 109.88088 * 61.51198 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 4.0724 2.8577 -0.1233 8 8 3.2844 3.7762 -0.2037 9 7 5.3975 3.1031 -0.1437 10 6 6.4611 2.0862 -0.0542 11 6 7.6938 2.7414 -0.7255 12 6 7.5502 4.2170 -0.2678 13 1 7.9638 4.3526 0.7316 14 7 8.1941 5.1213 -1.2238 15 6 7.8404 5.0582 -2.6440 16 6 9.1264 6.0255 -0.7898 17 1 9.0151 6.4941 0.1768 18 6 10.2146 6.3397 -1.5924 19 7 10.8541 7.4769 -1.4183 20 14 10.7712 5.1487 -2.9194 21 1 10.1660 5.5372 -4.2186 22 1 12.2515 5.1888 -3.0312 23 1 10.3388 3.7735 -2.5633 24 6 6.0217 4.4293 -0.2591 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9562 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 5.1694 0.8326 1.3085 33 1 3.7158 1.4226 2.1498 34 1 3.7161 -0.1907 1.3978 35 1 6.6763 1.8531 0.9886 36 1 6.1701 1.1845 -0.5931 37 1 8.6202 2.3049 -0.3522 38 1 7.6359 2.6618 -1.8111 39 1 6.9886 5.7108 -2.8357 40 1 8.6898 5.3835 -3.2447 41 1 7.5798 4.0334 -2.9083 42 1 11.6147 7.6963 -1.9788 43 1 5.7087 4.9067 -1.1877 44 1 5.7357 5.0488 0.5908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189459701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:10 Heat of formation + Delta-G solvation = -40.521406 kcal Electronic energy + Delta-G solvation = -21374.247569 eV Core-core repulsion = 18326.193933 eV Total energy + Delta-G solvation = -3048.053636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34462 -39.20682 -36.88430 -36.67168 -33.90986 -32.94288 -31.43569 -29.67791 -28.11550 -27.48066 -26.04104 -24.40365 -23.47796 -21.67402 -20.92576 -20.03397 -18.99590 -18.09841 -17.72562 -16.79998 -16.65962 -16.24887 -15.78380 -15.13204 -15.03377 -14.78912 -14.65616 -14.44306 -14.33185 -13.89044 -13.81883 -13.35740 -13.29821 -13.08711 -12.98946 -12.83161 -12.43556 -12.39133 -12.32809 -12.12421 -12.02301 -11.82613 -11.71555 -11.58757 -11.42188 -11.38265 -10.76505 -10.65494 -9.65805 -8.88523 -8.22083 -5.61128 1.32440 1.42618 1.54899 1.62389 1.97239 2.41694 3.01113 3.27547 3.48036 3.74253 3.81405 3.96666 3.98340 4.22279 4.29300 4.33042 4.36351 4.38567 4.40157 4.49175 4.64515 4.67813 4.70702 4.81388 4.81991 4.91329 4.94099 4.96926 5.01354 5.06244 5.12579 5.22936 5.23537 5.26880 5.33462 5.36198 5.46227 5.53412 5.88007 6.13816 6.57498 6.90239 7.15089 7.56626 7.97667 8.97406 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.003900 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.936482 B = 7177.224194 C = 7284.394428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.097 4.097 5 H 0.119 0.881 6 C -0.148 4.148 7 C 0.519 3.481 8 O -0.597 6.597 9 N -0.613 5.613 10 C 0.106 3.894 11 C -0.149 4.149 12 C 0.166 3.834 13 H 0.081 0.919 14 N -0.609 5.609 15 C 0.106 3.894 16 C -0.266 4.266 17 H 0.043 0.957 18 C -0.024 4.024 19 N -0.950 5.950 20 Si 0.954 3.046 21 H -0.280 1.280 22 H -0.310 1.310 23 H -0.245 1.245 24 C 0.098 3.902 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.014 0.986 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.264 0.736 43 H 0.045 0.955 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 -21.889 2.583 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.118 4.118 5 H 0.136 0.864 6 C -0.205 4.205 7 C 0.309 3.691 8 O -0.478 6.478 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.189 4.189 12 C 0.058 3.942 13 H 0.100 0.900 14 N -0.332 5.332 15 C -0.037 4.037 16 C -0.395 4.395 17 H 0.061 0.939 18 C -0.220 4.220 19 N -0.594 5.594 20 Si 0.783 3.217 21 H -0.208 1.208 22 H -0.238 1.238 23 H -0.169 1.169 24 C -0.028 4.028 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.032 0.968 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.292 -21.318 2.501 25.787 hybrid contribution 0.536 0.910 -0.655 1.243 sum -13.756 -20.407 1.846 24.680 Atomic orbital electron populations 1.21787 0.95836 1.02143 1.01479 1.21567 0.95956 0.94721 1.03287 1.21406 0.92483 0.98098 1.01689 1.21336 0.97370 0.90389 1.02656 0.86363 1.21985 1.02644 1.02067 0.93846 1.21327 0.80091 0.92799 0.74833 1.90665 1.55778 1.48707 1.52656 1.48614 1.05586 1.08737 1.71626 1.22653 0.85241 0.91411 1.02287 1.23319 0.98816 0.95378 1.01380 1.21546 0.88862 0.89787 0.93998 0.90041 1.44040 1.45430 1.40244 1.03458 1.21387 0.97729 0.99789 0.84841 1.18682 1.00848 1.15895 1.04121 0.93942 1.26100 0.96563 0.97757 1.01622 1.70011 1.23477 1.22735 1.43138 0.85716 0.75349 0.81894 0.78768 1.20787 1.23846 1.16864 1.22317 0.95291 0.85140 1.00043 0.93158 0.93448 0.91416 0.90895 0.90177 0.93028 0.93396 0.90386 0.93449 0.88671 0.88720 0.87367 0.88562 0.90934 0.96813 0.94969 0.91503 0.92697 0.93647 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.49 5.69 30.59 0.17 -1.32 16 3 C -0.10 -1.91 4.03 30.60 0.12 -1.79 16 4 C -0.10 -1.79 2.07 -11.54 -0.02 -1.81 16 5 H 0.12 1.66 7.85 -2.38 -0.02 1.64 16 6 C -0.15 -1.98 8.76 71.98 0.63 -1.35 16 7 C 0.52 15.24 7.21 87.66 0.63 15.87 16 8 O -0.60 -23.47 16.25 -3.05 -0.05 -23.52 16 9 N -0.61 -17.36 3.32 -811.82 -2.70 -20.06 16 10 C 0.11 2.10 5.13 86.85 0.45 2.54 16 11 C -0.15 -3.98 6.61 31.99 0.21 -3.77 16 12 C 0.17 6.04 3.44 46.18 0.16 6.20 16 13 H 0.08 3.05 7.95 -2.38 -0.02 3.03 16 14 N -0.61 -27.92 2.53 -696.16 -1.76 -29.68 16 15 C 0.11 4.48 8.47 127.77 1.08 5.56 16 16 C -0.27 -14.90 9.89 84.03 0.83 -14.07 16 17 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 18 C -0.02 -1.38 5.31 84.86 0.45 -0.93 16 19 N -0.95 -59.18 13.97 21.65 0.30 -58.87 16 20 Si 0.95 44.86 24.94 68.60 1.71 46.57 16 21 H -0.28 -12.76 6.67 99.48 0.66 -12.09 16 22 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 23 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 24 C 0.10 3.51 6.51 86.73 0.56 4.08 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.78 6.56 -2.38 -0.02 0.77 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.13 7.96 -2.39 -0.02 1.11 16 32 H 0.08 0.90 4.99 -2.39 -0.01 0.88 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.80 6.56 -2.39 -0.02 0.78 16 35 H 0.09 1.50 7.07 -2.39 -0.02 1.49 16 36 H 0.11 1.44 7.36 -2.38 -0.02 1.43 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.00 6.00 -2.38 -0.01 1.99 16 39 H 0.01 0.58 7.83 -2.39 -0.02 0.56 16 40 H 0.03 1.45 3.07 -2.39 -0.01 1.45 16 41 H 0.07 2.35 5.98 -2.39 -0.01 2.33 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.05 1.84 6.97 -2.39 -0.02 1.83 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -72.66 332.60 4.42 -68.24 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.92 Total: 9.39 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.99 Total: 7.93 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.16 Total: -108.61 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.71 Total: 46.57 kcal Total: -72.66 4.42 -68.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189459701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.718 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds