Wall clock time and date at job start Mon Mar 30 2020 00:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47490 * 54.99991 * 4 3 2 6 6 C 1.52997 * 109.47252 * 294.99926 * 4 3 2 7 7 C 1.50704 * 109.47217 * 174.99988 * 4 3 2 8 8 O 1.21287 * 119.99892 * 33.37239 * 7 4 3 9 9 N 1.34775 * 119.99880 * 213.37326 * 7 4 3 10 10 C 1.47425 * 125.65019 * 355.56565 * 9 7 4 11 11 C 1.54909 * 104.83092 * 204.09314 * 10 9 7 12 12 C 1.55155 * 101.58484 * 322.99297 * 11 10 9 13 13 H 1.09000 * 110.87232 * 277.07276 * 12 11 10 14 14 N 1.46497 * 110.72454 * 153.86502 * 12 11 10 15 15 C 1.46494 * 119.99969 * 306.47918 * 14 12 11 16 16 C 1.36939 * 120.00057 * 126.47579 * 14 12 11 17 17 H 1.08000 * 120.00166 * 343.58097 * 16 14 12 18 18 C 1.38814 * 119.99946 * 163.86028 * 16 14 12 19 19 N 1.31619 * 119.99802 * 343.53757 * 18 16 14 20 20 Si 1.86796 * 119.99902 * 163.53944 * 18 16 14 21 21 H 1.48500 * 109.47309 * 90.00155 * 20 18 16 22 22 H 1.48506 * 109.46796 * 209.99883 * 20 18 16 23 23 H 1.48499 * 109.47312 * 329.99668 * 20 18 16 24 24 C 1.47026 * 125.64499 * 175.52636 * 9 7 4 25 25 H 1.08999 * 109.47025 * 299.99795 * 1 2 3 26 26 H 1.08999 * 109.46771 * 60.00508 * 1 2 3 27 27 H 1.09005 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47291 * 239.99750 * 2 1 3 29 29 H 1.09002 * 109.46993 * 120.00229 * 2 1 3 30 30 H 1.09002 * 109.47196 * 59.99691 * 3 2 1 31 31 H 1.09002 * 109.47327 * 300.00024 * 3 2 1 32 32 H 1.08995 * 109.47540 * 186.46317 * 6 4 3 33 33 H 1.09005 * 109.47200 * 306.45993 * 6 4 3 34 34 H 1.09004 * 109.47235 * 66.45945 * 6 4 3 35 35 H 1.08996 * 110.36276 * 322.93190 * 10 9 7 36 36 H 1.09001 * 110.36599 * 85.25643 * 10 9 7 37 37 H 1.09000 * 111.00233 * 204.91551 * 11 10 9 38 38 H 1.08997 * 111.00310 * 81.06599 * 11 10 9 39 39 H 1.09001 * 109.47443 * 264.70260 * 15 14 12 40 40 H 1.09004 * 109.47146 * 24.70266 * 15 14 12 41 41 H 1.08999 * 109.47737 * 144.69983 * 15 14 12 42 42 H 0.96998 * 120.00059 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88007 * 59.56010 * 24 9 7 44 44 H 1.09000 * 110.01158 * 298.46528 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0806 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.4477 3.7691 0.3762 9 7 5.2156 3.1113 -0.7916 10 6 6.1179 2.0969 -1.3664 11 6 7.4990 2.7940 -1.4458 12 6 7.0954 4.2421 -1.8299 13 1 6.9392 4.3294 -2.9051 14 7 8.1065 5.1999 -1.3754 15 6 8.5264 5.2110 0.0281 16 6 8.6592 6.0847 -2.2624 17 1 8.5617 5.9163 -3.3248 18 6 9.3497 7.1950 -1.7962 19 7 9.2074 7.5812 -0.5460 20 14 10.4808 8.1408 -2.9430 21 1 9.7118 9.2140 -3.6227 22 1 11.5876 8.7455 -2.1589 23 1 11.0425 7.2148 -3.9590 24 6 5.7692 4.4451 -1.0673 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1644 0.9366 1.3568 33 1 3.6263 1.3508 2.1509 34 1 3.8147 -0.2238 1.3427 35 1 6.1704 1.2238 -0.7160 36 1 5.7803 1.8095 -2.3621 37 1 8.1202 2.3432 -2.2197 38 1 8.0036 2.7723 -0.4799 39 1 7.9532 5.9611 0.5729 40 1 8.3504 4.2292 0.4678 41 1 9.5880 5.4508 0.0879 42 1 9.6902 8.3568 -0.2201 43 1 5.9569 4.9695 -0.1304 44 1 5.0734 5.0184 -1.6799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189459702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:14 Heat of formation + Delta-G solvation = -26.850412 kcal Electronic energy + Delta-G solvation = -21273.252554 eV Core-core repulsion = 18225.791736 eV Total energy + Delta-G solvation = -3047.460817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95516 -37.68883 -35.88949 -34.79328 -32.27100 -31.39952 -29.66762 -27.94492 -26.80319 -26.06862 -24.53435 -22.77314 -22.31439 -20.85056 -19.19681 -18.63640 -17.04821 -16.96106 -15.89709 -15.50302 -15.07201 -14.79971 -14.25492 -14.07936 -13.52451 -13.30125 -13.29557 -12.75034 -12.62115 -12.49972 -12.28804 -12.13431 -12.04492 -11.78025 -11.51366 -11.34733 -11.09936 -10.94910 -10.89608 -10.78012 -10.66257 -10.57007 -10.42605 -10.29297 -9.88715 -9.80176 -9.39615 -8.55719 -8.25275 -6.88998 -5.76462 -3.17850 2.89906 3.27856 3.37158 3.43881 3.45710 4.45633 4.54128 4.63695 4.78744 4.99343 5.02838 5.06191 5.17848 5.23923 5.31801 5.41111 5.51946 5.53166 5.60190 5.62365 5.69166 5.71239 5.77416 5.85943 5.89180 5.95798 5.99133 6.01276 6.18228 6.24345 6.33709 6.37579 6.55681 6.69690 6.83178 6.86834 7.38308 7.68953 7.79411 7.88185 8.31506 8.47464 9.18070 9.81825 10.28215 11.28713 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044202 B = 0.003651 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.302921 B = 7666.822432 C = 7733.183290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.106 4.106 5 H 0.087 0.913 6 C -0.140 4.140 7 C 0.526 3.474 8 O -0.546 6.546 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.588 5.588 15 C 0.161 3.839 16 C -0.259 4.259 17 H 0.073 0.927 18 C 0.001 3.999 19 N -0.905 5.905 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.085 3.915 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.027 0.973 40 H 0.001 0.999 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 -17.047 0.252 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.127 4.127 5 H 0.105 0.895 6 C -0.198 4.198 7 C 0.314 3.686 8 O -0.424 6.424 9 N -0.347 5.347 10 C -0.022 4.022 11 C -0.193 4.193 12 C 0.063 3.937 13 H 0.096 0.904 14 N -0.308 5.308 15 C 0.017 3.983 16 C -0.389 4.389 17 H 0.090 0.910 18 C -0.197 4.197 19 N -0.550 5.550 20 Si 0.736 3.264 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.040 4.040 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.020 0.980 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.435 -16.380 0.656 19.432 hybrid contribution 0.635 0.669 -0.573 1.086 sum -9.800 -15.711 0.084 18.517 Atomic orbital electron populations 1.21766 0.95855 1.01376 1.01992 1.21576 0.95891 0.96656 1.02039 1.21476 0.92467 0.96744 1.03362 1.21287 0.97404 0.93627 1.00418 0.89483 1.21745 1.01348 1.00747 0.95933 1.20328 0.79624 0.91002 0.77631 1.90683 1.57138 1.47245 1.47342 1.48615 1.22244 1.09177 1.54693 1.22319 0.90465 0.91572 0.97853 1.23346 0.94716 0.98244 1.03022 1.21323 0.86811 0.88693 0.96914 0.90407 1.43987 1.41932 1.37750 1.07123 1.20828 0.99754 0.94260 0.83461 1.19250 1.28908 1.01754 0.88950 0.90954 1.24923 1.01383 0.96893 0.96535 1.70129 1.43649 1.26229 1.15011 0.86242 0.80588 0.79731 0.79870 1.21451 1.21572 1.20547 1.22919 0.96652 0.83042 1.01364 0.92662 0.92757 0.92881 0.92080 0.91704 0.90784 0.91806 0.92256 0.91839 0.91477 0.91330 0.91736 0.90384 0.90374 0.95421 0.98039 0.93164 0.93646 0.91035 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.02 5.69 -26.73 -0.15 -1.18 16 3 C -0.10 -1.13 4.24 -26.73 -0.11 -1.24 16 4 C -0.11 -1.24 2.12 -91.77 -0.19 -1.43 16 5 H 0.09 0.86 7.19 -51.93 -0.37 0.49 16 6 C -0.14 -1.43 8.77 37.16 0.33 -1.11 16 7 C 0.53 8.72 6.86 -10.98 -0.08 8.65 16 8 O -0.55 -11.33 16.67 5.55 0.09 -11.23 16 9 N -0.61 -10.14 3.33 -170.51 -0.57 -10.71 16 10 C 0.10 1.32 6.19 -2.53 -0.02 1.30 16 11 C -0.15 -2.39 6.59 -24.58 -0.16 -2.55 16 12 C 0.17 3.41 3.45 -66.10 -0.23 3.18 16 13 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 14 N -0.59 -14.37 2.94 -171.39 -0.50 -14.87 16 15 C 0.16 3.95 7.80 59.84 0.47 4.42 16 16 C -0.26 -6.98 9.69 -15.06 -0.15 -7.12 16 17 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 18 C 0.00 0.03 5.05 -17.43 -0.09 -0.06 16 19 N -0.91 -26.33 10.51 55.49 0.58 -25.74 16 20 Si 0.91 21.61 29.58 -169.99 -5.03 16.59 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.08 1.68 6.51 -3.06 -0.02 1.66 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 30 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.62 7.84 -51.93 -0.41 0.22 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.52 6.89 -51.93 -0.36 0.17 16 35 H 0.07 0.74 7.38 -51.93 -0.38 0.36 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.31 6.05 -51.93 -0.31 0.99 16 39 H 0.03 0.75 7.44 -51.93 -0.39 0.36 16 40 H 0.00 0.03 6.03 -51.93 -0.31 -0.29 16 41 H 0.05 1.32 6.97 -51.93 -0.36 0.96 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.64 7.13 -51.93 -0.37 1.27 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -31.29 342.16 -8.09 -39.38 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.79 Total: -2.28 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.03 Total: 3.71 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.49 Total: -51.32 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.29 -8.09 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189459702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.534 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds