Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47490 * 54.99991 * 4 3 2 6 6 C 1.52997 * 109.47252 * 294.99926 * 4 3 2 7 7 C 1.50704 * 109.47217 * 174.99988 * 4 3 2 8 8 O 1.21287 * 119.99892 * 33.37239 * 7 4 3 9 9 N 1.34775 * 119.99880 * 213.37326 * 7 4 3 10 10 C 1.47425 * 125.65019 * 355.56565 * 9 7 4 11 11 C 1.54909 * 104.83092 * 204.09314 * 10 9 7 12 12 C 1.55155 * 101.58484 * 322.99297 * 11 10 9 13 13 H 1.09000 * 110.87232 * 277.07276 * 12 11 10 14 14 N 1.46497 * 110.72454 * 153.86502 * 12 11 10 15 15 C 1.46494 * 119.99969 * 306.47918 * 14 12 11 16 16 C 1.36939 * 120.00057 * 126.47579 * 14 12 11 17 17 H 1.08000 * 120.00166 * 343.58097 * 16 14 12 18 18 C 1.38814 * 119.99946 * 163.86028 * 16 14 12 19 19 N 1.31619 * 119.99802 * 343.53757 * 18 16 14 20 20 Si 1.86796 * 119.99902 * 163.53944 * 18 16 14 21 21 H 1.48500 * 109.47309 * 90.00155 * 20 18 16 22 22 H 1.48506 * 109.46796 * 209.99883 * 20 18 16 23 23 H 1.48499 * 109.47312 * 329.99668 * 20 18 16 24 24 C 1.47026 * 125.64499 * 175.52636 * 9 7 4 25 25 H 1.08999 * 109.47025 * 299.99795 * 1 2 3 26 26 H 1.08999 * 109.46771 * 60.00508 * 1 2 3 27 27 H 1.09005 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47291 * 239.99750 * 2 1 3 29 29 H 1.09002 * 109.46993 * 120.00229 * 2 1 3 30 30 H 1.09002 * 109.47196 * 59.99691 * 3 2 1 31 31 H 1.09002 * 109.47327 * 300.00024 * 3 2 1 32 32 H 1.08995 * 109.47540 * 186.46317 * 6 4 3 33 33 H 1.09005 * 109.47200 * 306.45993 * 6 4 3 34 34 H 1.09004 * 109.47235 * 66.45945 * 6 4 3 35 35 H 1.08996 * 110.36276 * 322.93190 * 10 9 7 36 36 H 1.09001 * 110.36599 * 85.25643 * 10 9 7 37 37 H 1.09000 * 111.00233 * 204.91551 * 11 10 9 38 38 H 1.08997 * 111.00310 * 81.06599 * 11 10 9 39 39 H 1.09001 * 109.47443 * 264.70260 * 15 14 12 40 40 H 1.09004 * 109.47146 * 24.70266 * 15 14 12 41 41 H 1.08999 * 109.47737 * 144.69983 * 15 14 12 42 42 H 0.96998 * 120.00059 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88007 * 59.56010 * 24 9 7 44 44 H 1.09000 * 110.01158 * 298.46528 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0806 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.4477 3.7691 0.3762 9 7 5.2156 3.1113 -0.7916 10 6 6.1179 2.0969 -1.3664 11 6 7.4990 2.7940 -1.4458 12 6 7.0954 4.2421 -1.8299 13 1 6.9392 4.3294 -2.9051 14 7 8.1065 5.1999 -1.3754 15 6 8.5264 5.2110 0.0281 16 6 8.6592 6.0847 -2.2624 17 1 8.5617 5.9163 -3.3248 18 6 9.3497 7.1950 -1.7962 19 7 9.2074 7.5812 -0.5460 20 14 10.4808 8.1408 -2.9430 21 1 9.7118 9.2140 -3.6227 22 1 11.5876 8.7455 -2.1589 23 1 11.0425 7.2148 -3.9590 24 6 5.7692 4.4451 -1.0673 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1644 0.9366 1.3568 33 1 3.6263 1.3508 2.1509 34 1 3.8147 -0.2238 1.3427 35 1 6.1704 1.2238 -0.7160 36 1 5.7803 1.8095 -2.3621 37 1 8.1202 2.3432 -2.2197 38 1 8.0036 2.7723 -0.4799 39 1 7.9532 5.9611 0.5729 40 1 8.3504 4.2292 0.4678 41 1 9.5880 5.4508 0.0879 42 1 9.6902 8.3568 -0.2201 43 1 5.9569 4.9695 -0.1304 44 1 5.0734 5.0184 -1.6799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189459702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = -45.734107 kcal Electronic energy + Delta-G solvation = -21274.071412 eV Core-core repulsion = 18225.791736 eV Total energy + Delta-G solvation = -3048.279676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27376 -39.13593 -36.87697 -36.56138 -33.60538 -32.74817 -31.15937 -29.46781 -28.10876 -27.58029 -25.89217 -24.26491 -23.52771 -21.73102 -20.83068 -19.82917 -18.97452 -18.20184 -17.47796 -16.70514 -16.35310 -16.16908 -15.71231 -15.12133 -15.00159 -14.81880 -14.43541 -14.26671 -13.89368 -13.82707 -13.46088 -13.28466 -13.14318 -13.03055 -12.79276 -12.74938 -12.52161 -12.41182 -12.21834 -12.12697 -12.12236 -11.86683 -11.81419 -11.69211 -11.42709 -11.40411 -10.70808 -10.62149 -9.65035 -8.90862 -7.85306 -5.29088 1.47468 1.48424 1.58375 1.60878 1.99387 2.51274 3.26616 3.47140 3.57783 3.79424 3.83781 3.97948 4.04359 4.26137 4.32186 4.35066 4.37758 4.39540 4.46503 4.64444 4.65958 4.77340 4.80576 4.86732 4.90250 4.93608 5.02262 5.02645 5.11631 5.19958 5.21940 5.24814 5.30879 5.35309 5.42577 5.44577 5.52053 5.60903 5.69512 6.26833 6.59830 7.10064 7.16382 7.82908 8.25516 9.18920 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044202 B = 0.003651 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.302921 B = 7666.822432 C = 7733.183290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.101 4.101 4 C -0.095 4.095 5 H 0.119 0.881 6 C -0.138 4.138 7 C 0.517 3.483 8 O -0.600 6.600 9 N -0.615 5.615 10 C 0.105 3.895 11 C -0.140 4.140 12 C 0.165 3.835 13 H 0.084 0.916 14 N -0.603 5.603 15 C 0.182 3.818 16 C -0.264 4.264 17 H 0.082 0.918 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.265 1.265 24 C 0.095 3.905 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.066 0.934 39 H -0.011 1.011 40 H 0.031 0.969 41 H 0.025 0.975 42 H 0.247 0.753 43 H 0.029 0.971 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 -20.698 -1.307 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.139 4.139 4 C -0.116 4.116 5 H 0.137 0.863 6 C -0.195 4.195 7 C 0.308 3.692 8 O -0.481 6.481 9 N -0.347 5.347 10 C -0.017 4.017 11 C -0.180 4.180 12 C 0.057 3.943 13 H 0.103 0.897 14 N -0.324 5.324 15 C 0.037 3.963 16 C -0.394 4.394 17 H 0.100 0.900 18 C -0.253 4.253 19 N -0.590 5.590 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.189 1.189 24 C -0.031 4.031 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.007 0.993 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.423 -20.101 -0.937 22.662 hybrid contribution 0.537 1.791 -0.091 1.872 sum -9.886 -18.310 -1.029 20.834 Atomic orbital electron populations 1.21789 0.95749 1.02219 1.01485 1.21545 0.95983 0.94439 1.03421 1.21467 0.92163 0.98610 1.01685 1.21363 0.97556 0.90118 1.02529 0.86270 1.21776 1.01136 1.02402 0.94207 1.21421 0.78876 0.92749 0.76195 1.90658 1.58658 1.49396 1.49414 1.48729 1.22828 1.08441 1.54745 1.22590 0.87737 0.91123 1.00230 1.23224 0.96662 0.95027 1.03053 1.21571 0.85530 0.90196 0.97052 0.89748 1.44194 1.43287 1.38333 1.06628 1.20463 0.97399 0.94576 0.83850 1.19686 1.28163 1.01728 0.89823 0.89979 1.25758 1.03251 0.98319 0.98015 1.70318 1.44885 1.26830 1.16948 0.85190 0.78294 0.78376 0.78059 1.21521 1.22229 1.18915 1.22492 0.96824 0.84855 0.98915 0.93371 0.93213 0.91313 0.90409 0.90436 0.93047 0.93148 0.92214 0.93587 0.88018 0.87709 0.88576 0.87883 0.91535 0.99272 0.95053 0.95618 0.94360 0.95231 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.54 5.69 30.59 0.17 -1.36 16 3 C -0.10 -2.07 4.24 30.59 0.13 -1.94 16 4 C -0.09 -1.94 2.12 -11.54 -0.02 -1.97 16 5 H 0.12 1.73 7.19 -2.39 -0.02 1.71 16 6 C -0.14 -2.38 8.77 71.98 0.63 -1.75 16 7 C 0.52 16.79 6.86 87.66 0.60 17.39 16 8 O -0.60 -25.81 16.67 -3.05 -0.05 -25.86 16 9 N -0.61 -19.47 3.33 -811.77 -2.70 -22.17 16 10 C 0.10 2.28 6.19 86.86 0.54 2.82 16 11 C -0.14 -3.94 6.59 31.99 0.21 -3.73 16 12 C 0.17 6.38 3.45 46.18 0.16 6.54 16 13 H 0.08 3.14 7.89 -2.39 -0.02 3.12 16 14 N -0.60 -29.85 2.94 -696.16 -2.05 -31.90 16 15 C 0.18 9.22 7.80 127.77 1.00 10.22 16 16 C -0.26 -14.29 9.69 84.03 0.81 -13.48 16 17 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 18 C -0.06 -3.32 5.05 84.86 0.43 -2.89 16 19 N -0.94 -56.98 10.51 21.65 0.23 -56.75 16 20 Si 0.97 45.01 29.58 68.60 2.03 47.04 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.10 3.86 6.51 86.73 0.56 4.43 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.85 6.71 -2.39 -0.02 0.84 16 30 H 0.05 1.27 8.02 -2.39 -0.02 1.25 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.04 7.84 -2.39 -0.02 1.02 16 33 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.10 1.09 6.89 -2.39 -0.02 1.07 16 35 H 0.10 1.63 7.38 -2.39 -0.02 1.62 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 2.05 6.05 -2.39 -0.01 2.03 16 39 H -0.01 -0.64 7.44 -2.39 -0.02 -0.66 16 40 H 0.03 1.36 6.03 -2.38 -0.01 1.35 16 41 H 0.03 1.39 6.97 -2.39 -0.02 1.37 16 42 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 43 H 0.03 1.43 7.13 -2.39 -0.02 1.42 16 44 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -72.79 342.16 4.34 -68.45 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.95 Total: 8.26 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.94 Total: 12.93 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.52 Total: -110.82 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.79 4.34 -68.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189459702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.715 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds