Wall clock time and date at job start Mon Mar 30 2020 01:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47285 * 2 1 4 4 C 1.52996 * 109.46960 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99550 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00475 * 5.16838 * 6 5 4 8 8 N 1.34779 * 119.99645 * 185.17516 * 6 5 4 9 9 C 1.46496 * 119.99989 * 185.27616 * 8 6 5 10 10 C 1.50703 * 109.46946 * 269.99549 * 9 8 6 11 11 H 1.07996 * 119.99794 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99969 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00041 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46984 * 89.99718 * 14 12 10 16 16 H 1.48496 * 109.46906 * 209.99878 * 14 12 10 17 17 H 1.48502 * 109.46935 * 330.00261 * 14 12 10 18 18 C 1.46508 * 120.00087 * 5.26945 * 8 6 5 19 19 C 1.54269 * 110.02961 * 117.88389 * 18 8 6 20 20 C 1.54961 * 104.15991 * 95.75463 * 19 18 8 21 21 C 1.54896 * 102.77640 * 37.88719 * 20 19 18 22 22 C 1.53869 * 110.03266 * 235.10287 * 18 8 6 23 23 H 1.09007 * 109.47222 * 60.00220 * 1 2 3 24 24 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47104 * 300.00284 * 1 2 3 26 26 H 1.08998 * 109.46731 * 239.99909 * 2 1 3 27 27 H 1.09004 * 109.46514 * 119.99970 * 2 1 3 28 28 H 1.09000 * 109.46800 * 59.99712 * 3 2 1 29 29 H 1.08998 * 109.46902 * 300.00257 * 3 2 1 30 30 H 1.08997 * 109.47465 * 59.99439 * 4 3 2 31 31 H 1.09003 * 109.46936 * 299.99395 * 4 3 2 32 32 H 0.97001 * 120.00197 * 359.97438 * 5 4 3 33 33 H 1.09001 * 109.47525 * 29.99555 * 9 8 6 34 34 H 1.09006 * 109.47461 * 149.99893 * 9 8 6 35 35 H 0.97004 * 120.00451 * 180.02562 * 13 12 10 36 36 H 1.09001 * 110.01543 * 356.49244 * 18 8 6 37 37 H 1.08997 * 110.48248 * 214.40145 * 19 18 8 38 38 H 1.08997 * 110.48680 * 337.04519 * 19 18 8 39 39 H 1.08992 * 110.72127 * 279.57242 * 20 19 18 40 40 H 1.08999 * 110.92056 * 156.29338 * 20 19 18 41 41 H 1.08999 * 110.48363 * 203.40192 * 21 20 19 42 42 H 1.09000 * 110.59712 * 80.81383 * 21 20 19 43 43 H 1.08999 * 110.03904 * 359.94829 * 22 18 8 44 44 H 1.08998 * 110.03478 * 121.38242 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0698 -0.0010 7 8 6.1727 2.1500 -0.0972 8 7 5.8337 4.3357 0.1049 9 6 7.2669 4.6156 -0.0120 10 6 7.9060 4.5419 1.3508 11 1 7.3047 4.3093 2.2172 12 6 9.2582 4.7713 1.4915 13 7 9.8160 4.7064 2.6807 14 14 10.2981 5.1742 -0.0071 15 1 10.3223 6.6448 -0.2120 16 1 11.6828 4.6810 0.2042 17 1 9.7158 4.5171 -1.2048 18 6 4.8898 5.4320 0.3368 19 6 5.1960 6.1166 1.6849 20 6 6.0857 7.3263 1.3023 21 6 5.4536 7.8097 -0.0266 22 6 5.0539 6.5077 -0.7511 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8908 31 1 3.9337 0.9285 0.8892 32 1 3.4280 3.5609 0.0003 33 1 7.7285 3.8793 -0.6701 34 1 7.4097 5.6136 -0.4267 35 1 10.7673 4.8682 2.7798 36 1 3.8684 5.0515 0.3346 37 1 4.2747 6.4556 2.1584 38 1 5.7371 5.4373 2.3435 39 1 7.1178 7.0122 1.1472 40 1 6.0307 8.1057 2.0622 41 1 6.1827 8.3658 -0.6158 42 1 4.5740 8.4234 0.1681 43 1 5.8363 6.2148 -1.4511 44 1 4.1120 6.6494 -1.2812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190599987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:02 Heat of formation + Delta-G solvation = -43.708379 kcal Electronic energy + Delta-G solvation = -21630.568671 eV Core-core repulsion = 18582.376837 eV Total energy + Delta-G solvation = -3048.191834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78425 -37.60263 -36.01678 -33.60447 -33.42788 -32.24438 -29.24675 -28.26364 -28.04682 -26.46372 -23.60205 -21.94406 -21.35859 -20.61887 -20.11651 -18.60425 -17.57305 -16.79338 -15.85981 -15.81485 -14.94565 -14.67411 -14.45387 -14.12730 -13.85353 -13.70797 -13.26469 -12.94373 -12.75279 -12.41093 -12.30938 -11.68197 -11.67144 -11.33485 -11.25853 -11.19169 -11.10330 -10.88062 -10.74998 -10.69765 -10.50645 -10.47951 -10.32642 -10.00224 -9.84613 -9.33842 -9.17425 -8.60541 -8.49944 -7.51605 -5.99743 -3.95446 3.29830 3.33882 3.43075 3.44796 3.99832 4.44799 4.46781 4.75487 4.80327 4.92985 5.00367 5.11337 5.27933 5.28082 5.33386 5.43923 5.54858 5.62176 5.69328 5.81742 5.86459 5.94481 5.97370 5.98958 6.00401 6.13475 6.17567 6.18419 6.25197 6.30991 6.48455 6.65814 6.67335 6.95220 6.95738 7.01247 7.17764 7.45287 7.66096 7.78539 8.58920 8.73307 9.05427 9.39871 9.62304 11.13570 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.005378 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.634759 B = 5205.272972 C = 6045.201867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.139 3.861 5 N -0.760 5.760 6 C 0.701 3.299 7 O -0.584 6.584 8 N -0.603 5.603 9 C 0.232 3.768 10 C -0.512 4.512 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.867 3.133 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.265 1.265 18 C 0.143 3.857 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.136 4.136 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.389 0.611 33 H 0.035 0.965 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 0.624 -6.153 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.168 4.168 4 C 0.014 3.986 5 N -0.420 5.420 6 C 0.403 3.597 7 O -0.461 6.461 8 N -0.338 5.338 9 C 0.111 3.889 10 C -0.550 4.550 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.694 3.306 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.189 1.189 18 C 0.038 3.962 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.174 4.174 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.609 -0.052 -6.129 17.704 hybrid contribution 0.338 0.631 -0.617 0.945 sum -16.271 0.578 -6.746 17.624 Atomic orbital electron populations 1.21766 0.95775 1.01570 1.01763 1.21432 0.95772 0.96209 1.02579 1.21817 0.94860 0.97691 1.02450 1.21084 0.92519 0.82940 1.02027 1.45353 1.06019 1.08074 1.82510 1.15890 0.81826 0.83769 0.78240 1.90888 1.54733 1.43115 1.57393 1.47265 1.08771 1.03540 1.74199 1.19520 0.75369 0.95746 0.98312 1.21350 0.93610 1.47139 0.92941 0.90552 1.24821 0.97545 0.95225 0.95427 1.69891 1.11675 1.50239 1.22076 0.86986 0.80432 0.78772 0.84436 1.20189 1.21121 1.18926 1.21540 0.91555 0.87847 0.95260 1.22740 0.98961 0.98361 0.96854 1.22560 1.01706 0.96492 0.95295 1.22340 0.99768 0.96441 0.97459 1.22572 1.01336 0.95289 0.98224 0.92814 0.92761 0.92734 0.91690 0.91596 0.91469 0.91591 0.92110 0.92076 0.77521 0.94718 0.95494 0.92779 0.91239 0.92661 0.89002 0.88873 0.92626 0.92189 0.92405 0.90809 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.13 -1.26 5.33 -26.73 -0.14 -1.40 16 4 C 0.14 1.93 5.68 -4.04 -0.02 1.90 16 5 N -0.76 -12.13 5.44 -65.23 -0.35 -12.48 16 6 C 0.70 15.11 8.26 -86.91 -0.72 14.39 16 7 O -0.58 -15.37 15.99 5.30 0.08 -15.29 16 8 N -0.60 -12.58 2.34 -171.88 -0.40 -12.98 16 9 C 0.23 5.65 3.10 -5.19 -0.02 5.64 16 10 C -0.51 -14.36 7.75 -34.44 -0.27 -14.63 16 11 H 0.08 2.36 6.73 -52.49 -0.35 2.01 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 14 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 18 C 0.14 2.33 3.33 -66.81 -0.22 2.11 16 19 C -0.13 -2.23 5.88 -25.03 -0.15 -2.38 16 20 C -0.12 -2.10 6.36 -24.70 -0.16 -2.25 16 21 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 22 C -0.14 -1.96 5.97 -25.61 -0.15 -2.12 16 23 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.39 5.06 5.93 -40.82 -0.24 4.82 16 33 H 0.03 0.94 6.56 -51.93 -0.34 0.60 16 34 H 0.03 0.62 5.05 -51.93 -0.26 0.36 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 0.93 5.54 -51.93 -0.29 0.65 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.94 6.02 -51.93 -0.31 1.63 16 39 H 0.09 1.94 5.91 -51.93 -0.31 1.63 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.19 6.67 -51.93 -0.35 0.85 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -33.26 336.45 -8.94 -42.20 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.54 Total: 4.00 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.91 Total: -0.62 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.02 Total: -52.29 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.26 -8.94 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190599987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.508 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds