Wall clock time and date at job start Mon Mar 30 2020 01:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47285 * 2 1 4 4 C 1.52996 * 109.46960 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99550 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00475 * 5.16838 * 6 5 4 8 8 N 1.34779 * 119.99645 * 185.17516 * 6 5 4 9 9 C 1.46496 * 119.99989 * 185.27616 * 8 6 5 10 10 C 1.50703 * 109.46946 * 269.99549 * 9 8 6 11 11 H 1.07996 * 119.99794 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99969 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00041 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46984 * 89.99718 * 14 12 10 16 16 H 1.48496 * 109.46906 * 209.99878 * 14 12 10 17 17 H 1.48502 * 109.46935 * 330.00261 * 14 12 10 18 18 C 1.46508 * 120.00087 * 5.26945 * 8 6 5 19 19 C 1.54269 * 110.02961 * 117.88389 * 18 8 6 20 20 C 1.54961 * 104.15991 * 95.75463 * 19 18 8 21 21 C 1.54896 * 102.77640 * 37.88719 * 20 19 18 22 22 C 1.53869 * 110.03266 * 235.10287 * 18 8 6 23 23 H 1.09007 * 109.47222 * 60.00220 * 1 2 3 24 24 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47104 * 300.00284 * 1 2 3 26 26 H 1.08998 * 109.46731 * 239.99909 * 2 1 3 27 27 H 1.09004 * 109.46514 * 119.99970 * 2 1 3 28 28 H 1.09000 * 109.46800 * 59.99712 * 3 2 1 29 29 H 1.08998 * 109.46902 * 300.00257 * 3 2 1 30 30 H 1.08997 * 109.47465 * 59.99439 * 4 3 2 31 31 H 1.09003 * 109.46936 * 299.99395 * 4 3 2 32 32 H 0.97001 * 120.00197 * 359.97438 * 5 4 3 33 33 H 1.09001 * 109.47525 * 29.99555 * 9 8 6 34 34 H 1.09006 * 109.47461 * 149.99893 * 9 8 6 35 35 H 0.97004 * 120.00451 * 180.02562 * 13 12 10 36 36 H 1.09001 * 110.01543 * 356.49244 * 18 8 6 37 37 H 1.08997 * 110.48248 * 214.40145 * 19 18 8 38 38 H 1.08997 * 110.48680 * 337.04519 * 19 18 8 39 39 H 1.08992 * 110.72127 * 279.57242 * 20 19 18 40 40 H 1.08999 * 110.92056 * 156.29338 * 20 19 18 41 41 H 1.08999 * 110.48363 * 203.40192 * 21 20 19 42 42 H 1.09000 * 110.59712 * 80.81383 * 21 20 19 43 43 H 1.08999 * 110.03904 * 359.94829 * 22 18 8 44 44 H 1.08998 * 110.03478 * 121.38242 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0698 -0.0010 7 8 6.1727 2.1500 -0.0972 8 7 5.8337 4.3357 0.1049 9 6 7.2669 4.6156 -0.0120 10 6 7.9060 4.5419 1.3508 11 1 7.3047 4.3093 2.2172 12 6 9.2582 4.7713 1.4915 13 7 9.8160 4.7064 2.6807 14 14 10.2981 5.1742 -0.0071 15 1 10.3223 6.6448 -0.2120 16 1 11.6828 4.6810 0.2042 17 1 9.7158 4.5171 -1.2048 18 6 4.8898 5.4320 0.3368 19 6 5.1960 6.1166 1.6849 20 6 6.0857 7.3263 1.3023 21 6 5.4536 7.8097 -0.0266 22 6 5.0539 6.5077 -0.7511 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8908 31 1 3.9337 0.9285 0.8892 32 1 3.4280 3.5609 0.0003 33 1 7.7285 3.8793 -0.6701 34 1 7.4097 5.6136 -0.4267 35 1 10.7673 4.8682 2.7798 36 1 3.8684 5.0515 0.3346 37 1 4.2747 6.4556 2.1584 38 1 5.7371 5.4373 2.3435 39 1 7.1178 7.0122 1.1472 40 1 6.0307 8.1057 2.0622 41 1 6.1827 8.3658 -0.6158 42 1 4.5740 8.4234 0.1681 43 1 5.8363 6.2148 -1.4511 44 1 4.1120 6.6494 -1.2812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190599987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:01 Heat of formation + Delta-G solvation = -65.518807 kcal Electronic energy + Delta-G solvation = -21631.514442 eV Core-core repulsion = 18582.376837 eV Total energy + Delta-G solvation = -3049.137605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37264 -39.01090 -37.14050 -35.35544 -34.81293 -34.12475 -30.79340 -29.52191 -29.34237 -27.98884 -24.96576 -23.56788 -22.37261 -21.95729 -21.35516 -20.08528 -19.18836 -18.88746 -17.34869 -16.89533 -16.41811 -16.12232 -15.86338 -15.73590 -15.35588 -14.84981 -14.50030 -14.40874 -14.09111 -14.01028 -13.59387 -13.22458 -13.02951 -12.87322 -12.54378 -12.41279 -12.28970 -12.04354 -11.99306 -11.94302 -11.87998 -11.85483 -11.67481 -11.47658 -11.34198 -11.19791 -10.98822 -10.74193 -10.12912 -9.20559 -8.25644 -6.25895 1.30547 1.35312 1.45461 1.85296 2.31007 2.34660 3.03024 3.11821 3.75108 3.84547 3.89829 4.05189 4.08732 4.20497 4.48172 4.52314 4.65093 4.66359 4.67845 4.70510 4.72627 4.80050 4.88762 4.95494 4.96397 4.98529 5.09850 5.11637 5.17133 5.24443 5.28218 5.39105 5.41331 5.48752 5.53460 5.55243 5.61821 5.72254 5.75341 6.14553 6.38383 6.73820 7.20355 7.33009 7.75293 8.91235 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.005378 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.634759 B = 5205.272972 C = 6045.201867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.116 4.116 4 C 0.136 3.864 5 N -0.737 5.737 6 C 0.692 3.308 7 O -0.642 6.642 8 N -0.607 5.607 9 C 0.247 3.753 10 C -0.505 4.505 11 H 0.032 0.968 12 C 0.012 3.988 13 N -0.947 5.947 14 Si 0.932 3.068 15 H -0.251 1.251 16 H -0.285 1.285 17 H -0.259 1.259 18 C 0.135 3.865 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.132 4.132 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.407 0.593 33 H 0.007 0.993 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.307 2.383 -8.163 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.154 4.154 4 C 0.012 3.988 5 N -0.397 5.397 6 C 0.393 3.607 7 O -0.524 6.524 8 N -0.341 5.341 9 C 0.124 3.876 10 C -0.543 4.543 11 H 0.050 0.950 12 C -0.185 4.185 13 N -0.589 5.589 14 Si 0.756 3.244 15 H -0.176 1.176 16 H -0.211 1.211 17 H -0.184 1.184 18 C 0.032 3.968 19 C -0.168 4.168 20 C -0.167 4.167 21 C -0.149 4.149 22 C -0.170 4.170 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.246 0.754 33 H 0.025 0.975 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.593 1.747 -8.142 21.289 hybrid contribution 1.162 0.036 0.123 1.169 sum -18.430 1.783 -8.019 20.178 Atomic orbital electron populations 1.21736 0.94285 1.02193 1.02319 1.21446 0.96982 0.95367 1.02317 1.21747 0.91029 0.98802 1.03781 1.21255 0.95563 0.81386 1.00600 1.45153 1.04104 1.09718 1.80703 1.16232 0.83219 0.83271 0.77982 1.90839 1.56708 1.44924 1.59953 1.47241 1.08141 1.04806 1.73907 1.19107 0.77542 0.95673 0.95300 1.21462 0.93537 1.45983 0.93363 0.94992 1.25689 0.98984 0.95273 0.98524 1.70045 1.12134 1.52136 1.24564 0.85939 0.78160 0.79914 0.80418 1.17556 1.21078 1.18354 1.21953 0.92019 0.87230 0.95593 1.22696 0.99916 0.97500 0.96682 1.22513 0.99354 0.96864 0.97931 1.22314 1.00918 0.96600 0.95066 1.22579 1.02905 0.94315 0.97208 0.92050 0.92209 0.92348 0.91784 0.92241 0.90409 0.89834 0.93131 0.94130 0.75351 0.97472 0.93473 0.92671 0.87628 0.88987 0.94212 0.93499 0.91597 0.91802 0.88962 0.92684 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.90 5.93 30.59 0.18 -1.72 16 3 C -0.12 -1.96 5.33 30.59 0.16 -1.80 16 4 C 0.14 3.70 5.68 86.38 0.49 4.19 16 5 N -0.74 -22.68 5.44 -478.54 -2.60 -25.28 16 6 C 0.69 30.22 8.26 179.05 1.48 31.69 16 7 O -0.64 -35.27 15.99 -3.97 -0.06 -35.33 16 8 N -0.61 -25.45 2.34 -815.98 -1.91 -27.36 16 9 C 0.25 12.34 3.10 85.63 0.27 12.60 16 10 C -0.50 -29.81 7.75 25.60 0.20 -29.61 16 11 H 0.03 2.13 6.73 -2.91 -0.02 2.11 16 12 C 0.01 0.74 5.47 84.66 0.46 1.20 16 13 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 14 Si 0.93 45.51 27.47 68.60 1.88 47.40 16 15 H -0.25 -11.21 7.11 99.48 0.71 -10.51 16 16 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 17 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 18 C 0.14 4.11 3.33 45.71 0.15 4.26 16 19 C -0.13 -4.31 5.88 31.69 0.19 -4.12 16 20 C -0.13 -4.26 6.36 31.91 0.20 -4.06 16 21 C -0.11 -2.71 6.83 31.67 0.22 -2.50 16 22 C -0.13 -3.31 5.97 31.32 0.19 -3.12 16 23 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 9.33 5.93 -92.71 -0.55 8.78 16 33 H 0.01 0.40 6.56 -2.39 -0.02 0.39 16 34 H 0.05 2.18 5.05 -2.38 -0.01 2.17 16 35 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.11 2.40 5.54 -2.39 -0.01 2.39 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 1.75 6.02 -2.39 -0.01 1.73 16 39 H 0.05 1.98 5.91 -2.39 -0.01 1.96 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.05 1.62 6.67 -2.39 -0.02 1.60 16 44 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.89 336.45 2.88 -76.01 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.37 Total: 19.07 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 4.90 Total: 5.98 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.21 Total: -113.12 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.06 Total: -35.33 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -78.89 2.88 -76.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190599987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.495 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds