Wall clock time and date at job start Mon Mar 30 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47039 * 2 1 4 4 C 1.52991 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47576 * 54.99944 * 4 3 2 6 6 C 1.53001 * 109.47523 * 295.00094 * 4 3 2 7 7 C 1.50700 * 109.47299 * 174.99996 * 4 3 2 8 8 O 1.21286 * 119.99711 * 14.51995 * 7 4 3 9 9 N 1.34772 * 120.00464 * 194.51682 * 7 4 3 10 10 C 1.48209 * 119.96919 * 356.32269 * 9 7 4 11 11 C 1.47138 * 110.34546 * 102.46349 * 10 9 7 12 12 C 1.53802 * 111.83973 * 58.30122 * 11 10 9 13 13 N 1.43470 * 107.95662 * 281.66608 * 12 11 10 14 14 C 1.36935 * 118.93940 * 273.60998 * 13 12 11 15 15 H 1.08004 * 120.00097 * 36.20379 * 14 13 12 16 16 C 1.38815 * 120.00009 * 216.20831 * 14 13 12 17 17 N 1.31610 * 119.99700 * 24.20629 * 16 14 13 18 18 Si 1.86798 * 119.99777 * 204.20779 * 16 14 13 19 19 H 1.48498 * 109.46982 * 269.99710 * 18 16 14 20 20 H 1.48507 * 109.46801 * 149.99678 * 18 16 14 21 21 H 1.48499 * 109.47044 * 30.00051 * 18 16 14 22 22 C 1.48864 * 122.11852 * 93.88749 * 13 12 11 23 23 C 1.43627 * 119.97155 * 176.29460 * 9 7 4 24 24 H 1.09001 * 109.46636 * 299.99805 * 1 2 3 25 25 H 1.08995 * 109.47532 * 59.99640 * 1 2 3 26 26 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46777 * 240.00633 * 2 1 3 28 28 H 1.08995 * 109.47532 * 120.00360 * 2 1 3 29 29 H 1.09005 * 109.46618 * 59.99906 * 3 2 1 30 30 H 1.08999 * 109.46769 * 300.00456 * 3 2 1 31 31 H 1.09005 * 109.46985 * 304.83492 * 6 4 3 32 32 H 1.09000 * 109.47227 * 64.82810 * 6 4 3 33 33 H 1.08998 * 109.47533 * 184.83530 * 6 4 3 34 34 H 1.09001 * 109.32438 * 342.19893 * 10 9 7 35 35 H 1.09003 * 109.18209 * 222.64379 * 10 9 7 36 36 H 1.08991 * 109.00770 * 297.68960 * 11 10 9 37 37 H 1.08999 * 109.00822 * 178.90501 * 11 10 9 38 38 H 1.08994 * 109.76473 * 162.04751 * 12 11 10 39 39 H 1.09006 * 109.80570 * 41.30141 * 12 11 10 40 40 H 0.97002 * 120.01001 * 5.92626 * 17 16 14 41 41 H 1.08998 * 109.47692 * 80.34933 * 22 13 12 42 42 H 1.09000 * 109.47827 * 200.37753 * 22 13 12 43 43 H 1.09004 * 108.87321 * 31.47147 * 23 9 7 44 44 H 1.08997 * 108.87295 * 150.00352 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0806 0.8327 1.3064 7 6 4.0723 2.8580 -0.1245 8 8 3.3158 3.7881 0.0590 9 7 5.3620 3.0903 -0.4390 10 6 6.3049 1.9559 -0.5828 11 6 6.5463 1.6686 -2.0055 12 6 7.1110 2.8912 -2.7484 13 7 6.0226 3.7859 -3.0190 14 6 5.2821 3.6036 -4.1563 15 1 5.0758 2.6050 -4.5121 16 6 4.7967 4.7024 -4.8520 17 7 5.3966 5.8686 -4.7416 18 14 3.2919 4.5256 -5.9446 19 1 3.7184 4.1569 -7.3185 20 1 2.5548 5.8143 -5.9842 21 1 2.4064 3.4654 -5.3998 22 6 5.6762 4.9097 -2.1062 23 6 5.8214 4.4369 -0.6350 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6486 1.3696 2.1510 32 1 3.7897 -0.2166 1.3558 33 1 5.1671 0.9107 1.3436 34 1 5.8827 1.0729 -0.1031 35 1 7.2488 2.2114 -0.1012 36 1 5.6069 1.3723 -2.4722 37 1 7.2561 0.8453 -2.0860 38 1 7.5691 2.5741 -3.6851 39 1 7.8531 3.3912 -2.1259 40 1 6.2261 5.9423 -4.2442 41 1 6.3485 5.7477 -2.2902 42 1 4.6478 5.2218 -2.2880 43 1 5.2460 5.1029 0.0080 44 1 6.8724 4.4956 -0.3522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195372576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:26 Heat of formation + Delta-G solvation = -30.108612 kcal Electronic energy + Delta-G solvation = -22424.107248 eV Core-core repulsion = 19376.505144 eV Total energy + Delta-G solvation = -3047.602104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05052 -37.27698 -35.78589 -34.53225 -32.42682 -32.03739 -30.67621 -27.62158 -26.67792 -25.27974 -24.32724 -23.19966 -21.86120 -20.39186 -19.70994 -18.39683 -17.24397 -16.64634 -15.97705 -15.41426 -14.97142 -14.24436 -14.12234 -13.85915 -13.81069 -13.61236 -13.39822 -12.94614 -12.63512 -12.36511 -12.32508 -12.17476 -11.95034 -11.75867 -11.28844 -11.07731 -11.02257 -10.84039 -10.74035 -10.63329 -10.45230 -10.37107 -10.28927 -10.18245 -9.98033 -9.31221 -9.13994 -8.27525 -8.06364 -6.76701 -5.98072 -3.29845 3.12015 3.50351 3.53400 3.57744 3.71812 4.63541 4.66805 4.82582 4.98327 5.10596 5.18943 5.26064 5.29716 5.34940 5.43905 5.52932 5.58832 5.68095 5.75969 5.76652 5.84915 5.86693 5.89548 5.98770 6.05998 6.07737 6.14449 6.20048 6.28181 6.33124 6.35125 6.41181 6.50162 6.74956 6.77401 6.93662 7.13030 7.26529 7.90634 8.16200 8.64352 8.72702 9.23016 9.88236 10.32998 11.23256 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.007319 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.371589 B = 3824.545133 C = 4757.677226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.100 4.100 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.146 4.146 7 C 0.522 3.478 8 O -0.547 6.547 9 N -0.585 5.585 10 C 0.115 3.885 11 C -0.172 4.172 12 C 0.164 3.836 13 N -0.592 5.592 14 C -0.357 4.357 15 H 0.047 0.953 16 C -0.013 4.013 17 N -0.909 5.909 18 Si 1.061 2.939 19 H -0.294 1.294 20 H -0.286 1.286 21 H -0.292 1.292 22 C 0.142 3.858 23 C 0.097 3.903 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.029 0.971 40 H 0.268 0.732 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 -11.902 11.584 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.138 4.138 4 C -0.131 4.131 5 H 0.111 0.889 6 C -0.203 4.203 7 C 0.310 3.690 8 O -0.425 6.425 9 N -0.316 5.316 10 C -0.007 4.007 11 C -0.213 4.213 12 C 0.036 3.964 13 N -0.314 5.314 14 C -0.487 4.487 15 H 0.064 0.936 16 C -0.217 4.217 17 N -0.548 5.548 18 Si 0.891 3.109 19 H -0.221 1.221 20 H -0.211 1.211 21 H -0.219 1.219 22 C 0.016 3.984 23 C -0.028 4.028 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.128 -10.535 10.726 15.184 hybrid contribution 1.210 -0.932 0.738 1.696 sum -0.917 -11.467 11.464 16.241 Atomic orbital electron populations 1.21758 0.95941 1.01197 1.02012 1.21582 0.95868 0.96910 1.01809 1.21416 0.92528 0.96336 1.03471 1.21290 0.97583 0.94237 0.99964 0.88949 1.21931 1.01226 1.01002 0.96185 1.20458 0.81525 0.91101 0.75931 1.90646 1.55069 1.45825 1.50966 1.47326 1.09126 1.07070 1.68121 1.20934 0.92761 0.89138 0.97837 1.21890 1.02322 1.00961 0.96142 1.20280 0.89598 0.89773 0.96777 1.43641 1.32527 1.32991 1.22253 1.19765 1.32181 0.93639 1.03070 0.93571 1.25895 1.03543 0.93715 0.98567 1.70754 1.17923 1.26391 1.39706 0.83617 0.76312 0.75510 0.75489 1.22132 1.21148 1.21883 1.22100 1.00023 0.90036 0.86260 1.21763 0.98237 0.83346 0.99432 0.92832 0.92585 0.93023 0.92048 0.92024 0.91336 0.91231 0.92178 0.91543 0.91870 0.90271 0.91867 0.91410 0.92564 0.93485 0.95252 0.92080 0.95000 0.91807 0.90933 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.38 5.69 -26.73 -0.15 -1.53 16 3 C -0.10 -1.42 4.00 -26.73 -0.11 -1.52 16 4 C -0.11 -1.58 1.87 -91.78 -0.17 -1.75 16 5 H 0.09 1.33 7.47 -51.93 -0.39 0.94 16 6 C -0.15 -1.61 8.39 37.16 0.31 -1.30 16 7 C 0.52 9.84 6.90 -10.99 -0.08 9.76 16 8 O -0.55 -12.37 15.60 5.55 0.09 -12.28 16 9 N -0.59 -10.54 2.46 -176.43 -0.43 -10.97 16 10 C 0.12 1.68 5.01 -5.92 -0.03 1.65 16 11 C -0.17 -2.86 5.64 -29.13 -0.16 -3.02 16 12 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 13 N -0.59 -14.56 2.25 -171.77 -0.39 -14.95 16 14 C -0.36 -10.00 9.01 -15.06 -0.14 -10.13 16 15 H 0.05 1.32 7.94 -52.48 -0.42 0.90 16 16 C -0.01 -0.39 4.70 -17.43 -0.08 -0.47 16 17 N -0.91 -27.66 12.93 55.49 0.72 -26.95 16 18 Si 1.06 26.23 29.98 -169.99 -5.10 21.13 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.14 3.39 5.23 -1.56 -0.01 3.38 16 23 C 0.10 1.89 5.29 -4.39 -0.02 1.87 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.59 6.68 -51.93 -0.35 0.25 16 29 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.59 6.81 -51.93 -0.35 0.24 16 33 H 0.06 0.65 5.79 -51.93 -0.30 0.35 16 34 H 0.08 0.95 4.17 -51.93 -0.22 0.74 16 35 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.07 1.31 7.88 -51.93 -0.41 0.90 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 39 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 40 H 0.27 8.17 6.64 -40.82 -0.27 7.90 16 41 H 0.03 0.79 7.16 -51.93 -0.37 0.41 16 42 H 0.06 1.78 7.48 -51.93 -0.39 1.39 16 43 H 0.07 1.44 7.32 -51.93 -0.38 1.06 16 44 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -32.58 333.64 -8.03 -40.61 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.65 Total: -0.65 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.30 Total: -0.97 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.10 Total: -52.87 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.10 Total: 21.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.58 -8.03 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195372576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.498 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds