Wall clock time and date at job start Mon Mar 30 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47039 * 2 1 4 4 C 1.52991 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47576 * 54.99944 * 4 3 2 6 6 C 1.53001 * 109.47523 * 295.00094 * 4 3 2 7 7 C 1.50700 * 109.47299 * 174.99996 * 4 3 2 8 8 O 1.21286 * 119.99711 * 14.51995 * 7 4 3 9 9 N 1.34772 * 120.00464 * 194.51682 * 7 4 3 10 10 C 1.48209 * 119.96919 * 356.32269 * 9 7 4 11 11 C 1.47138 * 110.34546 * 102.46349 * 10 9 7 12 12 C 1.53802 * 111.83973 * 58.30122 * 11 10 9 13 13 N 1.43470 * 107.95662 * 281.66608 * 12 11 10 14 14 C 1.36935 * 118.93940 * 273.60998 * 13 12 11 15 15 H 1.08004 * 120.00097 * 36.20379 * 14 13 12 16 16 C 1.38815 * 120.00009 * 216.20831 * 14 13 12 17 17 N 1.31610 * 119.99700 * 24.20629 * 16 14 13 18 18 Si 1.86798 * 119.99777 * 204.20779 * 16 14 13 19 19 H 1.48498 * 109.46982 * 269.99710 * 18 16 14 20 20 H 1.48507 * 109.46801 * 149.99678 * 18 16 14 21 21 H 1.48499 * 109.47044 * 30.00051 * 18 16 14 22 22 C 1.48864 * 122.11852 * 93.88749 * 13 12 11 23 23 C 1.43627 * 119.97155 * 176.29460 * 9 7 4 24 24 H 1.09001 * 109.46636 * 299.99805 * 1 2 3 25 25 H 1.08995 * 109.47532 * 59.99640 * 1 2 3 26 26 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46777 * 240.00633 * 2 1 3 28 28 H 1.08995 * 109.47532 * 120.00360 * 2 1 3 29 29 H 1.09005 * 109.46618 * 59.99906 * 3 2 1 30 30 H 1.08999 * 109.46769 * 300.00456 * 3 2 1 31 31 H 1.09005 * 109.46985 * 304.83492 * 6 4 3 32 32 H 1.09000 * 109.47227 * 64.82810 * 6 4 3 33 33 H 1.08998 * 109.47533 * 184.83530 * 6 4 3 34 34 H 1.09001 * 109.32438 * 342.19893 * 10 9 7 35 35 H 1.09003 * 109.18209 * 222.64379 * 10 9 7 36 36 H 1.08991 * 109.00770 * 297.68960 * 11 10 9 37 37 H 1.08999 * 109.00822 * 178.90501 * 11 10 9 38 38 H 1.08994 * 109.76473 * 162.04751 * 12 11 10 39 39 H 1.09006 * 109.80570 * 41.30141 * 12 11 10 40 40 H 0.97002 * 120.01001 * 5.92626 * 17 16 14 41 41 H 1.08998 * 109.47692 * 80.34933 * 22 13 12 42 42 H 1.09000 * 109.47827 * 200.37753 * 22 13 12 43 43 H 1.09004 * 108.87321 * 31.47147 * 23 9 7 44 44 H 1.08997 * 108.87295 * 150.00352 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0806 0.8327 1.3064 7 6 4.0723 2.8580 -0.1245 8 8 3.3158 3.7881 0.0590 9 7 5.3620 3.0903 -0.4390 10 6 6.3049 1.9559 -0.5828 11 6 6.5463 1.6686 -2.0055 12 6 7.1110 2.8912 -2.7484 13 7 6.0226 3.7859 -3.0190 14 6 5.2821 3.6036 -4.1563 15 1 5.0758 2.6050 -4.5121 16 6 4.7967 4.7024 -4.8520 17 7 5.3966 5.8686 -4.7416 18 14 3.2919 4.5256 -5.9446 19 1 3.7184 4.1569 -7.3185 20 1 2.5548 5.8143 -5.9842 21 1 2.4064 3.4654 -5.3998 22 6 5.6762 4.9097 -2.1062 23 6 5.8214 4.4369 -0.6350 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6486 1.3696 2.1510 32 1 3.7897 -0.2166 1.3558 33 1 5.1671 0.9107 1.3436 34 1 5.8827 1.0729 -0.1031 35 1 7.2488 2.2114 -0.1012 36 1 5.6069 1.3723 -2.4722 37 1 7.2561 0.8453 -2.0860 38 1 7.5691 2.5741 -3.6851 39 1 7.8531 3.3912 -2.1259 40 1 6.2261 5.9423 -4.2442 41 1 6.3485 5.7477 -2.2902 42 1 4.6478 5.2218 -2.2880 43 1 5.2460 5.1029 0.0080 44 1 6.8724 4.4956 -0.3522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195372576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:26 Heat of formation + Delta-G solvation = -49.736712 kcal Electronic energy + Delta-G solvation = -22424.958386 eV Core-core repulsion = 19376.505144 eV Total energy + Delta-G solvation = -3048.453242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48287 -38.88292 -36.96605 -36.29359 -33.98380 -33.39414 -32.32902 -29.32712 -27.66108 -26.92702 -25.93055 -24.79417 -23.09992 -21.66291 -21.37699 -19.79824 -19.24379 -18.05889 -17.41929 -16.75370 -16.26311 -16.14222 -15.71711 -15.39767 -15.21115 -15.01261 -14.76825 -14.22657 -14.18488 -13.87955 -13.61141 -13.39984 -13.15779 -13.03641 -12.82988 -12.64166 -12.41799 -12.12421 -12.09715 -12.05165 -11.98366 -11.85701 -11.80135 -11.63959 -11.44468 -11.29041 -10.59187 -10.44077 -9.59109 -8.87425 -8.17513 -5.51810 1.47363 1.57365 1.66916 1.72868 2.17728 2.59183 3.17086 3.46651 3.56999 3.78082 3.95133 3.96638 4.10505 4.17048 4.27372 4.35106 4.38104 4.40665 4.47282 4.63900 4.65218 4.70871 4.79799 4.83772 4.85060 4.90203 4.96799 5.00333 5.02068 5.09411 5.11781 5.18249 5.24238 5.29260 5.42424 5.47705 5.49260 5.76421 5.90229 6.39786 6.50387 7.15154 7.27411 7.77019 8.22982 8.96218 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.007319 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.371589 B = 3824.545133 C = 4757.677226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.098 4.098 4 C -0.103 4.103 5 H 0.098 0.902 6 C -0.139 4.139 7 C 0.507 3.493 8 O -0.598 6.598 9 N -0.589 5.589 10 C 0.110 3.890 11 C -0.157 4.157 12 C 0.154 3.846 13 N -0.605 5.605 14 C -0.353 4.353 15 H 0.039 0.961 16 C -0.068 4.068 17 N -0.938 5.938 18 Si 1.103 2.897 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.284 1.284 22 C 0.152 3.848 23 C 0.110 3.890 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.098 0.902 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.255 0.745 41 H 0.017 0.983 42 H 0.009 0.991 43 H 0.062 0.938 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -15.241 13.252 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.136 4.136 4 C -0.124 4.124 5 H 0.116 0.884 6 C -0.196 4.196 7 C 0.298 3.702 8 O -0.479 6.479 9 N -0.319 5.319 10 C -0.010 4.010 11 C -0.197 4.197 12 C 0.027 3.973 13 N -0.328 5.328 14 C -0.484 4.484 15 H 0.057 0.943 16 C -0.266 4.266 17 N -0.579 5.579 18 Si 0.928 3.072 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.210 1.210 22 C 0.026 3.974 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.028 0.972 43 H 0.081 0.919 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.107 -13.939 12.405 18.693 hybrid contribution 0.957 0.095 0.225 0.988 sum -0.150 -13.844 12.630 18.741 Atomic orbital electron populations 1.21779 0.95593 1.02300 1.01413 1.21552 0.96191 0.94470 1.03146 1.21393 0.92807 0.98261 1.01138 1.21341 0.97384 0.91317 1.02361 0.88436 1.21933 1.01943 1.02285 0.93422 1.21434 0.81403 0.92598 0.74810 1.90619 1.56401 1.47767 1.53120 1.47559 1.09694 1.07343 1.67274 1.21276 0.93652 0.89149 0.96914 1.21672 1.01526 0.99981 0.96566 1.20539 0.88952 0.90560 0.97208 1.43810 1.33767 1.33624 1.21628 1.19949 1.31734 0.93089 1.03615 0.94338 1.27082 1.05701 0.93663 1.00172 1.70860 1.18180 1.27328 1.41554 0.83041 0.73676 0.75263 0.75195 1.19975 1.21942 1.20990 1.21845 0.96315 0.89869 0.89398 1.21485 1.00154 0.84495 0.95496 0.92659 0.94098 0.91000 0.91751 0.89425 0.92225 0.95157 0.92579 0.88491 0.90433 0.86843 0.88647 0.94412 0.88393 0.94916 0.93145 0.93484 0.96515 0.97194 0.91938 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.91 71.98 0.71 -2.21 16 2 C -0.12 -2.30 5.69 30.60 0.17 -2.13 16 3 C -0.10 -2.75 4.00 30.59 0.12 -2.62 16 4 C -0.10 -2.78 1.87 -11.54 -0.02 -2.80 16 5 H 0.10 2.55 7.47 -2.39 -0.02 2.53 16 6 C -0.14 -2.47 8.39 71.98 0.60 -1.86 16 7 C 0.51 18.94 6.90 87.66 0.60 19.55 16 8 O -0.60 -28.02 15.60 -3.05 -0.05 -28.07 16 9 N -0.59 -20.23 2.46 -830.51 -2.04 -22.28 16 10 C 0.11 2.72 5.01 84.23 0.42 3.14 16 11 C -0.16 -4.68 5.64 29.04 0.16 -4.51 16 12 C 0.15 6.00 5.63 87.21 0.49 6.49 16 13 N -0.60 -30.18 2.25 -697.36 -1.57 -31.75 16 14 C -0.35 -20.27 9.01 84.03 0.76 -19.51 16 15 H 0.04 2.24 7.94 -2.91 -0.02 2.22 16 16 C -0.07 -4.07 4.70 84.86 0.40 -3.67 16 17 N -0.94 -59.45 12.93 21.65 0.28 -59.16 16 18 Si 1.10 54.41 29.98 68.60 2.06 56.47 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 21 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 22 C 0.15 7.55 5.23 86.68 0.45 8.00 16 23 C 0.11 4.21 5.29 87.67 0.46 4.68 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.09 1.31 6.68 -2.39 -0.02 1.30 16 29 H 0.06 1.75 8.09 -2.38 -0.02 1.73 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.10 1.18 6.81 -2.39 -0.02 1.17 16 33 H 0.08 1.17 5.79 -2.39 -0.01 1.16 16 34 H 0.11 2.09 4.17 -2.39 -0.01 2.08 16 35 H 0.10 1.86 8.05 -2.39 -0.02 1.84 16 36 H 0.04 1.37 7.88 -2.39 -0.02 1.35 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 39 H 0.05 1.75 7.59 -2.38 -0.02 1.74 16 40 H 0.26 16.30 6.64 -92.71 -0.62 15.69 16 41 H 0.02 0.88 7.16 -2.39 -0.02 0.86 16 42 H 0.01 0.56 7.48 -2.39 -0.02 0.54 16 43 H 0.06 2.53 7.32 -2.39 -0.02 2.51 16 44 H 0.09 2.90 7.72 -2.39 -0.02 2.88 16 Total: -1.00 -76.61 333.64 5.13 -71.48 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.11 Total: 10.78 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.35 Total: 2.54 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.33 Total: -113.19 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 54.41 SS G_CDS: 2.06 Total: 56.47 kcal Total: -76.61 5.13 -71.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195372576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.741 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds