Wall clock time and date at job start Mon Mar 30 2020 00:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46992 * 2 1 4 4 C 1.53002 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46924 * 305.00309 * 4 3 2 6 6 C 1.53004 * 109.47141 * 64.99897 * 4 3 2 7 7 C 1.50697 * 109.47506 * 184.99821 * 4 3 2 8 8 O 1.21274 * 120.00269 * 263.41154 * 7 4 3 9 9 N 1.34776 * 119.99758 * 83.40683 * 7 4 3 10 10 C 1.46933 * 120.63074 * 4.77065 * 9 7 4 11 11 C 1.52757 * 109.00618 * 233.57906 * 10 9 7 12 12 C 1.53036 * 109.38752 * 305.58841 * 11 10 9 13 13 N 1.46499 * 109.46200 * 181.26044 * 12 11 10 14 14 C 1.36935 * 119.99839 * 84.93381 * 13 12 11 15 15 H 1.07998 * 120.00596 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00113 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00257 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99619 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47071 * 90.00359 * 18 16 14 20 20 H 1.48506 * 109.46993 * 210.00262 * 18 16 14 21 21 H 1.48501 * 109.47002 * 330.00242 * 18 16 14 22 22 C 1.53037 * 109.53841 * 61.23885 * 12 11 10 23 23 C 1.46924 * 120.63467 * 185.04522 * 9 7 4 24 24 H 1.09000 * 109.47088 * 60.00273 * 1 2 3 25 25 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47145 * 299.99917 * 1 2 3 27 27 H 1.09008 * 109.47005 * 240.00184 * 2 1 3 28 28 H 1.08994 * 109.47234 * 120.00150 * 2 1 3 29 29 H 1.08998 * 109.47108 * 60.00060 * 3 2 1 30 30 H 1.09008 * 109.47277 * 299.99945 * 3 2 1 31 31 H 1.09001 * 109.47150 * 173.92174 * 6 4 3 32 32 H 1.09005 * 109.46920 * 53.91922 * 6 4 3 33 33 H 1.09003 * 109.47263 * 293.92089 * 6 4 3 34 34 H 1.09005 * 109.58341 * 353.41418 * 10 9 7 35 35 H 1.08995 * 109.58496 * 113.83986 * 10 9 7 36 36 H 1.09004 * 109.56287 * 185.54983 * 11 10 9 37 37 H 1.09006 * 109.35995 * 65.50118 * 11 10 9 38 38 H 1.08999 * 109.45893 * 301.22000 * 12 11 10 39 39 H 0.96999 * 120.00361 * 264.93075 * 13 12 11 40 40 H 0.96997 * 119.99596 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.50238 * 178.68714 * 22 12 11 42 42 H 1.08993 * 109.52574 * 58.60526 * 22 12 11 43 43 H 1.08998 * 109.58962 * 246.16301 * 23 9 7 44 44 H 1.09005 * 109.58376 * 6.44303 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8331 -1.3083 7 6 4.0724 2.8579 0.1231 8 8 4.3877 3.4785 -0.8699 9 7 4.1712 3.4341 1.3375 10 6 3.8928 2.6630 2.5569 11 6 2.8500 3.4071 3.3889 12 6 3.3307 4.8372 3.6452 13 7 2.3457 5.5431 4.4684 14 6 2.3823 5.4248 5.8321 15 1 3.1370 4.8108 6.3009 16 6 1.4487 6.0932 6.6121 17 7 1.4835 5.9791 7.9229 18 14 0.1428 7.1547 5.8014 19 1 -1.0573 6.3291 5.5130 20 1 -0.2285 8.2660 6.7139 21 1 0.6761 7.7130 4.5329 22 6 3.4977 5.5679 2.3110 23 6 4.5534 4.8468 1.4670 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.1641 0.9310 -1.3565 32 1 3.6296 1.3560 -2.1524 33 1 3.8078 -0.2218 -1.3477 34 1 3.5090 1.6790 2.2873 35 1 4.8090 2.5537 3.1372 36 1 2.7089 2.8946 4.3405 37 1 1.9054 3.4327 2.8454 38 1 4.2874 4.8106 4.1669 39 1 1.6676 6.0943 4.0474 40 1 0.8313 6.4465 8.4679 41 1 3.8177 6.5935 2.4953 42 1 2.5473 5.5738 1.7774 43 1 5.5245 4.9193 1.9566 44 1 4.6077 5.3027 0.4784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199882907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:34 Heat of formation + Delta-G solvation = -46.432500 kcal Electronic energy + Delta-G solvation = -21500.345274 eV Core-core repulsion = 18452.035313 eV Total energy + Delta-G solvation = -3048.309960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35113 -37.66671 -36.16274 -34.61901 -32.33819 -31.85522 -30.79108 -29.79239 -26.83620 -25.44749 -23.85405 -22.96981 -22.02870 -21.03394 -20.17387 -18.63446 -17.62274 -17.22995 -15.85852 -15.49439 -15.22324 -14.87171 -14.21137 -14.19112 -13.93286 -13.59067 -13.52091 -13.19126 -12.92068 -12.71378 -12.45677 -12.25123 -12.05023 -12.03984 -11.91649 -11.36688 -11.25412 -11.07373 -11.04008 -10.94445 -10.89239 -10.69554 -10.54765 -10.27635 -9.91072 -9.62740 -9.54708 -8.95948 -8.53137 -7.32124 -5.81319 -3.17148 2.66052 3.08191 3.34623 3.38079 3.42898 4.39598 4.55515 4.62123 4.69319 4.90456 4.97607 5.01550 5.08255 5.21740 5.23692 5.31426 5.35574 5.46482 5.50183 5.58001 5.59374 5.61584 5.70223 5.73336 5.77466 5.85203 5.91315 5.96572 6.00038 6.07669 6.12844 6.13805 6.17404 6.28590 6.36425 6.53256 6.78117 6.91293 7.50129 7.94311 8.24180 8.37875 9.16092 9.88958 10.08750 11.36929 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.004804 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.981533 B = 5826.960570 C = 6512.943638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.112 4.112 5 H 0.093 0.907 6 C -0.132 4.132 7 C 0.518 3.482 8 O -0.550 6.550 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.151 4.151 12 C 0.184 3.816 13 N -0.748 5.748 14 C -0.245 4.245 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.933 5.933 18 Si 0.883 3.117 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.142 4.142 23 C 0.116 3.884 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -11.504 -16.303 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.133 4.133 5 H 0.111 0.889 6 C -0.190 4.190 7 C 0.307 3.693 8 O -0.429 6.429 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.192 4.192 12 C 0.074 3.926 13 N -0.390 5.390 14 C -0.375 4.375 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.181 4.181 23 C -0.007 4.007 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.349 -11.203 -16.555 20.268 hybrid contribution -1.091 0.816 -0.206 1.378 sum 2.258 -10.387 -16.761 19.847 Atomic orbital electron populations 1.21777 0.95682 1.01592 1.02092 1.21554 0.96031 0.96161 1.02202 1.21593 0.92216 0.97803 1.03226 1.21377 0.97473 0.93612 1.00869 0.88905 1.21657 1.01287 1.00008 0.96019 1.20657 0.77233 0.88846 0.82600 1.90649 1.50140 1.65365 1.36699 1.48205 1.67805 1.11836 1.06120 1.21839 0.99714 0.94968 0.85333 1.22557 0.97700 0.99213 0.99713 1.20134 0.93337 0.89611 0.89526 1.42797 1.35295 1.57027 1.03898 1.19065 1.12771 1.25103 0.80516 0.89173 1.24665 0.99001 1.00190 0.95142 1.69698 1.38246 1.47093 1.03061 0.86568 0.82677 0.80780 0.78599 1.21124 1.21727 1.20344 1.22241 0.99000 0.99957 0.96911 1.21573 0.97558 0.80365 1.01187 0.92811 0.92750 0.92439 0.91699 0.91784 0.91051 0.91342 0.92494 0.91780 0.91967 0.90056 0.91338 0.90122 0.92318 0.92546 0.80660 0.93032 0.90535 0.92035 0.91505 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.11 -1.10 4.49 -26.73 -0.12 -1.22 16 4 C -0.11 -1.17 1.87 -91.77 -0.17 -1.34 16 5 H 0.09 0.83 6.36 -51.93 -0.33 0.50 16 6 C -0.13 -1.27 8.20 37.16 0.30 -0.97 16 7 C 0.52 7.19 6.82 -10.99 -0.07 7.12 16 8 O -0.55 -9.42 15.63 5.56 0.09 -9.33 16 9 N -0.61 -8.15 2.98 -173.03 -0.52 -8.67 16 10 C 0.10 1.28 6.09 -3.93 -0.02 1.26 16 11 C -0.15 -2.35 5.64 -26.84 -0.15 -2.50 16 12 C 0.18 3.30 2.73 -67.89 -0.19 3.12 16 13 N -0.75 -17.03 4.92 -53.39 -0.26 -17.29 16 14 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 15 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 16 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 17 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 18 Si 0.88 21.83 27.74 -169.99 -4.71 17.11 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 22 C -0.14 -2.20 5.55 -26.61 -0.15 -2.34 16 23 C 0.12 1.61 6.42 -3.71 -0.02 1.59 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.48 6.70 -51.92 -0.35 0.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 30 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.06 0.47 6.87 -51.93 -0.36 0.11 16 34 H 0.08 0.82 5.19 -51.93 -0.27 0.55 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 39 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.26 7.04 -51.93 -0.37 0.90 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -31.70 341.13 -7.93 -39.63 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.81 Total: 5.50 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.63 Total: -4.06 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.00 Total: -53.99 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.70 -7.93 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199882907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.802 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds