Wall clock time and date at job start Mon Mar 30 2020 00:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46992 * 2 1 4 4 C 1.53002 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46924 * 305.00309 * 4 3 2 6 6 C 1.53004 * 109.47141 * 64.99897 * 4 3 2 7 7 C 1.50697 * 109.47506 * 184.99821 * 4 3 2 8 8 O 1.21274 * 120.00269 * 263.41154 * 7 4 3 9 9 N 1.34776 * 119.99758 * 83.40683 * 7 4 3 10 10 C 1.46933 * 120.63074 * 4.77065 * 9 7 4 11 11 C 1.52757 * 109.00618 * 233.57906 * 10 9 7 12 12 C 1.53036 * 109.38752 * 305.58841 * 11 10 9 13 13 N 1.46499 * 109.46200 * 181.26044 * 12 11 10 14 14 C 1.36935 * 119.99839 * 84.93381 * 13 12 11 15 15 H 1.07998 * 120.00596 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00113 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00257 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99619 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47071 * 90.00359 * 18 16 14 20 20 H 1.48506 * 109.46993 * 210.00262 * 18 16 14 21 21 H 1.48501 * 109.47002 * 330.00242 * 18 16 14 22 22 C 1.53037 * 109.53841 * 61.23885 * 12 11 10 23 23 C 1.46924 * 120.63467 * 185.04522 * 9 7 4 24 24 H 1.09000 * 109.47088 * 60.00273 * 1 2 3 25 25 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47145 * 299.99917 * 1 2 3 27 27 H 1.09008 * 109.47005 * 240.00184 * 2 1 3 28 28 H 1.08994 * 109.47234 * 120.00150 * 2 1 3 29 29 H 1.08998 * 109.47108 * 60.00060 * 3 2 1 30 30 H 1.09008 * 109.47277 * 299.99945 * 3 2 1 31 31 H 1.09001 * 109.47150 * 173.92174 * 6 4 3 32 32 H 1.09005 * 109.46920 * 53.91922 * 6 4 3 33 33 H 1.09003 * 109.47263 * 293.92089 * 6 4 3 34 34 H 1.09005 * 109.58341 * 353.41418 * 10 9 7 35 35 H 1.08995 * 109.58496 * 113.83986 * 10 9 7 36 36 H 1.09004 * 109.56287 * 185.54983 * 11 10 9 37 37 H 1.09006 * 109.35995 * 65.50118 * 11 10 9 38 38 H 1.08999 * 109.45893 * 301.22000 * 12 11 10 39 39 H 0.96999 * 120.00361 * 264.93075 * 13 12 11 40 40 H 0.96997 * 119.99596 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.50238 * 178.68714 * 22 12 11 42 42 H 1.08993 * 109.52574 * 58.60526 * 22 12 11 43 43 H 1.08998 * 109.58962 * 246.16301 * 23 9 7 44 44 H 1.09005 * 109.58376 * 6.44303 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8331 -1.3083 7 6 4.0724 2.8579 0.1231 8 8 4.3877 3.4785 -0.8699 9 7 4.1712 3.4341 1.3375 10 6 3.8928 2.6630 2.5569 11 6 2.8500 3.4071 3.3889 12 6 3.3307 4.8372 3.6452 13 7 2.3457 5.5431 4.4684 14 6 2.3823 5.4248 5.8321 15 1 3.1370 4.8108 6.3009 16 6 1.4487 6.0932 6.6121 17 7 1.4835 5.9791 7.9229 18 14 0.1428 7.1547 5.8014 19 1 -1.0573 6.3291 5.5130 20 1 -0.2285 8.2660 6.7139 21 1 0.6761 7.7130 4.5329 22 6 3.4977 5.5679 2.3110 23 6 4.5534 4.8468 1.4670 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.1641 0.9310 -1.3565 32 1 3.6296 1.3560 -2.1524 33 1 3.8078 -0.2218 -1.3477 34 1 3.5090 1.6790 2.2873 35 1 4.8090 2.5537 3.1372 36 1 2.7089 2.8946 4.3405 37 1 1.9054 3.4327 2.8454 38 1 4.2874 4.8106 4.1669 39 1 1.6676 6.0943 4.0474 40 1 0.8313 6.4465 8.4679 41 1 3.8177 6.5935 2.4953 42 1 2.5473 5.5738 1.7774 43 1 5.5245 4.9193 1.9566 44 1 4.6077 5.3027 0.4784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199882907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:33 Heat of formation + Delta-G solvation = -65.826134 kcal Electronic energy + Delta-G solvation = -21501.186245 eV Core-core repulsion = 18452.035313 eV Total energy + Delta-G solvation = -3049.150931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44641 -38.95650 -37.01564 -36.24331 -33.93339 -32.94811 -31.91474 -31.47122 -27.59886 -26.83630 -25.06871 -24.31719 -23.35632 -21.93253 -21.46597 -19.95103 -19.29113 -18.39448 -16.88605 -16.72044 -16.42338 -16.16279 -15.88146 -15.15555 -15.13613 -14.91612 -14.75413 -14.41670 -14.12255 -13.97102 -13.62180 -13.44742 -13.21356 -12.98450 -12.87550 -12.80777 -12.63695 -12.24738 -12.09835 -12.08052 -12.00736 -11.95516 -11.79747 -11.67558 -11.39788 -11.33226 -10.96389 -10.58656 -9.67997 -9.30577 -8.01365 -5.34181 1.38154 1.39702 1.47204 1.59111 2.02846 2.48620 3.30305 3.45281 3.53225 3.85135 3.86286 3.92755 4.03376 4.14004 4.24436 4.31569 4.34036 4.38561 4.45756 4.59616 4.62226 4.75745 4.78332 4.80993 4.82565 4.90602 4.96256 4.98960 5.03607 5.07912 5.12322 5.24766 5.28125 5.31625 5.42389 5.46466 5.51301 5.62355 5.78979 6.22940 6.42994 7.08798 7.16276 7.85457 8.03636 9.20088 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.004804 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.981533 B = 5826.960570 C = 6512.943638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.107 4.107 5 H 0.116 0.884 6 C -0.129 4.129 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.141 4.141 12 C 0.175 3.825 13 N -0.753 5.753 14 C -0.224 4.224 15 H 0.062 0.938 16 C -0.062 4.062 17 N -0.984 5.984 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.298 1.298 21 H -0.255 1.255 22 C -0.130 4.130 23 C 0.120 3.880 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.363 0.637 40 H 0.257 0.743 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -12.770 -18.082 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.128 4.128 5 H 0.134 0.866 6 C -0.187 4.187 7 C 0.304 3.696 8 O -0.467 6.467 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.182 4.182 12 C 0.068 3.932 13 N -0.395 5.395 14 C -0.355 4.355 15 H 0.080 0.920 16 C -0.253 4.253 17 N -0.634 5.634 18 Si 0.777 3.223 19 H -0.207 1.207 20 H -0.225 1.225 21 H -0.180 1.180 22 C -0.169 4.169 23 C -0.003 4.003 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.329 -12.495 -18.384 22.476 hybrid contribution -0.994 1.168 0.329 1.568 sum 2.335 -11.328 -18.055 21.442 Atomic orbital electron populations 1.21792 0.95917 1.02125 1.01497 1.21540 0.95784 0.94835 1.03314 1.21554 0.91749 0.98988 1.02126 1.21442 0.97639 0.91487 1.02237 0.86640 1.21652 1.00720 1.01356 0.94944 1.21314 0.76360 0.90017 0.81935 1.90635 1.51709 1.66555 1.37810 1.48288 1.67462 1.11683 1.06540 1.21853 0.99274 0.95418 0.84474 1.22346 0.98669 0.97541 0.99608 1.20395 0.91863 0.90984 0.89993 1.42842 1.36359 1.57736 1.02594 1.19033 1.11000 1.22977 0.82499 0.92017 1.25415 1.01828 1.02456 0.95616 1.69868 1.39687 1.49076 1.04810 0.85492 0.79848 0.78709 0.78206 1.20672 1.22513 1.18018 1.22098 0.99460 0.99932 0.95437 1.21496 0.97502 0.80727 1.00617 0.93085 0.91667 0.93414 0.90514 0.90677 0.92078 0.92603 0.93115 0.93253 0.89294 0.87195 0.90055 0.91682 0.92576 0.93340 0.80462 0.93453 0.90447 0.92364 0.90232 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.12 -1.54 5.69 30.59 0.17 -1.37 16 3 C -0.11 -1.86 4.49 30.59 0.14 -1.72 16 4 C -0.11 -1.94 1.87 -11.54 -0.02 -1.96 16 5 H 0.12 1.58 6.36 -2.39 -0.02 1.56 16 6 C -0.13 -2.17 8.20 71.98 0.59 -1.58 16 7 C 0.51 13.27 6.82 87.66 0.60 13.87 16 8 O -0.59 -19.48 15.63 -3.01 -0.05 -19.52 16 9 N -0.61 -15.02 2.98 -819.74 -2.44 -17.46 16 10 C 0.11 2.45 6.09 86.22 0.52 2.98 16 11 C -0.14 -4.17 5.64 30.53 0.17 -4.00 16 12 C 0.18 6.13 2.73 45.02 0.12 6.25 16 13 N -0.75 -33.67 4.92 -322.83 -1.59 -35.26 16 14 C -0.22 -12.30 10.41 84.03 0.87 -11.43 16 15 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 16 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 17 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 18 Si 0.95 45.09 27.74 68.60 1.90 47.00 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.26 -11.05 6.52 99.48 0.65 -10.40 16 22 C -0.13 -3.84 5.55 30.67 0.17 -3.67 16 23 C 0.12 3.12 6.42 86.36 0.55 3.67 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.85 6.70 -2.38 -0.02 0.83 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.20 7.79 -2.39 -0.02 1.18 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.98 8.07 -2.38 -0.02 0.96 16 33 H 0.09 1.01 6.87 -2.39 -0.02 0.99 16 34 H 0.11 1.81 5.19 -2.38 -0.01 1.80 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.36 15.92 5.66 -92.71 -0.52 15.39 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 2.29 7.04 -2.38 -0.02 2.28 16 Total: -1.00 -69.16 341.13 3.58 -65.58 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.38 Total: 25.02 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 5.08 Total: -3.55 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.73 Total: -114.52 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 47.00 kcal Total: -69.16 3.58 -65.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199882907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.245 kcal (2) G-P(sol) polarization free energy of solvation -69.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds