Wall clock time and date at job start Mon Mar 30 2020 01:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47039 * 2 1 4 4 C 1.52995 * 109.47156 * 239.99661 * 2 1 3 5 5 N 1.46503 * 109.46970 * 119.99510 * 2 1 3 6 6 C 1.34779 * 119.99550 * 60.00570 * 5 2 1 7 7 O 1.21580 * 120.00195 * 5.10836 * 6 5 2 8 8 N 1.34787 * 119.99321 * 185.11157 * 6 5 2 9 9 C 1.46505 * 119.99376 * 185.27620 * 8 6 5 10 10 C 1.50692 * 109.47433 * 270.00128 * 9 8 6 11 11 H 1.08004 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00117 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00006 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47066 * 59.99878 * 14 12 10 16 16 H 1.48499 * 109.46776 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47052 * 300.00137 * 14 12 10 18 18 C 1.46498 * 120.00359 * 5.27912 * 8 6 5 19 19 C 1.54266 * 110.03082 * 117.87954 * 18 8 6 20 20 C 1.54966 * 104.15844 * 95.75634 * 19 18 8 21 21 C 1.54892 * 102.77792 * 37.88412 * 20 19 18 22 22 C 1.53868 * 110.03234 * 235.10267 * 18 8 6 23 23 H 1.09004 * 109.47028 * 300.00114 * 1 2 3 24 24 H 1.08999 * 109.47479 * 60.00062 * 1 2 3 25 25 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47484 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47077 * 299.99657 * 3 2 1 28 28 H 1.09000 * 109.47638 * 59.99668 * 3 2 1 29 29 H 1.08999 * 109.47280 * 299.99956 * 4 2 1 30 30 H 1.08999 * 109.46700 * 59.99800 * 4 2 1 31 31 H 1.08994 * 109.47346 * 179.97438 * 4 2 1 32 32 H 0.97001 * 120.00197 * 239.99405 * 5 2 1 33 33 H 1.08998 * 109.47101 * 30.00334 * 9 8 6 34 34 H 1.09001 * 109.46380 * 149.99704 * 9 8 6 35 35 H 0.96995 * 119.99655 * 180.02562 * 13 12 10 36 36 H 1.09002 * 110.01367 * 356.49523 * 18 8 6 37 37 H 1.08995 * 110.48623 * 214.39852 * 19 18 8 38 38 H 1.08999 * 110.48712 * 337.05004 * 19 18 8 39 39 H 1.08998 * 110.71781 * 279.57498 * 20 19 18 40 40 H 1.08997 * 110.92687 * 156.29329 * 20 19 18 41 41 H 1.08998 * 110.49270 * 203.40350 * 21 20 19 42 42 H 1.09007 * 110.59813 * 80.81770 * 21 20 19 43 43 H 1.09003 * 110.03449 * 359.94770 * 22 18 8 44 44 H 1.08999 * 110.03506 * 121.38294 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6928 -1.9809 1.4095 7 8 1.0726 -2.5988 0.5658 8 7 2.0547 -2.5862 2.5581 9 6 1.8034 -4.0177 2.7424 10 6 0.4439 -4.2135 3.3622 11 1 -0.1713 -3.3572 3.5960 12 6 -0.0141 -5.4857 3.6319 13 7 0.7358 -6.5284 3.3486 14 14 -1.6991 -5.7284 4.4009 15 1 -2.7379 -5.1548 3.5082 16 1 -1.9537 -7.1794 4.5875 17 1 -1.7454 -5.0438 5.7179 18 6 2.6991 -1.8126 3.6223 19 6 1.8213 -1.8256 4.8908 20 6 2.4081 -2.9770 5.7460 21 6 3.9314 -2.8464 5.4976 22 6 4.0400 -2.4616 4.0076 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6766 -0.2075 -2.1391 31 1 3.1300 -0.7209 -1.2494 32 1 2.5761 -0.2191 1.8347 33 1 1.8377 -4.5200 1.7756 34 1 2.5658 -4.4389 3.3978 35 1 0.4134 -7.4233 3.5379 36 1 2.8621 -0.7869 3.2916 37 1 1.9032 -0.8769 5.4211 38 1 0.7823 -2.0317 4.6336 39 1 2.0412 -3.9423 5.3970 40 1 2.1754 -2.8357 6.8014 41 1 4.4313 -3.7969 5.6836 42 1 4.3566 -2.0635 6.1257 43 1 4.2109 -3.3526 3.4034 44 1 4.8538 -1.7508 3.8639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202477371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:04 Heat of formation + Delta-G solvation = -36.821623 kcal Electronic energy + Delta-G solvation = -22462.613525 eV Core-core repulsion = 19414.720324 eV Total energy + Delta-G solvation = -3047.893202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90416 -37.88656 -35.94572 -33.43525 -32.60683 -30.97838 -28.21798 -27.82643 -27.21180 -26.92027 -26.19440 -22.93340 -20.74435 -20.12274 -19.70983 -18.41662 -17.40617 -16.42567 -15.62046 -14.96006 -14.67771 -14.43760 -14.38874 -13.80836 -13.78940 -13.37659 -12.85534 -12.61720 -12.23899 -12.16578 -11.84143 -11.81914 -11.44930 -11.34487 -11.19437 -11.02277 -10.83606 -10.79691 -10.73347 -10.65288 -10.51985 -10.50507 -10.32809 -9.94104 -9.72218 -9.37315 -8.85056 -8.49068 -8.33089 -7.43485 -5.94489 -3.96374 3.36250 3.40926 3.42381 3.49534 4.10377 4.47197 4.60306 5.01809 5.05074 5.12018 5.20826 5.29336 5.38048 5.39802 5.63851 5.74210 5.79315 5.93838 5.97820 5.98102 6.01533 6.06937 6.07178 6.17478 6.20601 6.27086 6.34262 6.38258 6.54283 6.68440 6.72740 6.74696 6.88479 7.03718 7.19162 7.22465 7.53129 7.72897 7.89755 8.07699 8.37298 8.91633 9.04032 9.53336 9.69659 11.13174 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.007393 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.693650 B = 3786.427977 C = 4778.151420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.188 3.812 3 C -0.152 4.152 4 C -0.163 4.163 5 N -0.754 5.754 6 C 0.702 3.298 7 O -0.580 6.580 8 N -0.609 5.609 9 C 0.263 3.737 10 C -0.509 4.509 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.144 3.856 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.134 4.134 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.387 0.613 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 14.110 -0.396 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.101 3.899 3 C -0.210 4.210 4 C -0.221 4.221 5 N -0.414 5.414 6 C 0.404 3.596 7 O -0.458 6.458 8 N -0.344 5.344 9 C 0.144 3.856 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C 0.038 3.962 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.173 4.173 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.222 0.778 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.631 13.415 -1.010 14.584 hybrid contribution -0.656 0.108 0.839 1.070 sum 4.976 13.523 -0.172 14.411 Atomic orbital electron populations 1.22217 0.94817 1.04279 1.00687 1.19996 0.93967 0.90691 0.85249 1.22063 1.01222 0.95237 1.02446 1.22275 1.00378 1.03627 0.95857 1.45579 1.57707 1.12005 1.26072 1.15932 0.79914 0.80798 0.82947 1.90809 1.45235 1.64415 1.45319 1.47652 1.61722 1.12051 1.12961 1.19108 0.96006 0.72912 0.97604 1.21405 1.01805 0.91956 1.39622 0.92565 1.24887 0.97128 0.95941 0.96140 1.69917 1.37084 0.98269 1.48419 0.86691 0.85042 0.76862 0.79617 1.20378 1.21376 1.20365 1.21479 0.92178 0.93487 0.89009 1.22728 1.01518 0.97479 0.95126 1.22587 0.93869 1.01452 0.98286 1.22296 0.97652 1.00371 0.95434 1.22553 0.96381 1.01145 0.97203 0.93192 0.92692 0.89974 0.92340 0.91275 0.92319 0.89443 0.92888 0.93365 0.77774 0.94528 0.94682 0.92898 0.91588 0.92867 0.89572 0.88413 0.92987 0.92102 0.92709 0.90519 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 2 C 0.19 2.66 1.06 -131.82 -0.14 2.52 16 3 C -0.15 -1.55 8.59 37.16 0.32 -1.24 16 4 C -0.16 -2.41 8.40 37.16 0.31 -2.10 16 5 N -0.75 -12.11 4.99 -52.42 -0.26 -12.37 16 6 C 0.70 14.85 7.67 -86.91 -0.67 14.18 16 7 O -0.58 -14.59 12.21 5.30 0.06 -14.52 16 8 N -0.61 -12.79 2.34 -171.89 -0.40 -13.20 16 9 C 0.26 6.72 4.04 -5.19 -0.02 6.69 16 10 C -0.51 -13.95 7.20 -34.44 -0.25 -14.20 16 11 H 0.06 1.56 6.48 -52.48 -0.34 1.22 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.14 2.40 3.33 -66.82 -0.22 2.18 16 19 C -0.13 -2.20 5.88 -25.03 -0.15 -2.35 16 20 C -0.12 -2.14 6.36 -24.70 -0.16 -2.30 16 21 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 22 C -0.13 -2.06 5.97 -25.61 -0.15 -2.21 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.57 6.34 -51.93 -0.33 1.25 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.63 6.00 -51.93 -0.31 1.32 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.39 5.24 5.92 -40.82 -0.24 5.00 16 33 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 34 H 0.04 0.91 5.63 -51.93 -0.29 0.61 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 0.92 5.53 -51.93 -0.29 0.64 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.73 6.02 -51.93 -0.31 1.42 16 39 H 0.10 2.08 5.91 -51.93 -0.31 1.78 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.08 1.35 6.67 -51.93 -0.35 1.01 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -30.99 330.88 -8.34 -39.34 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.37 Total: 5.83 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.08 Total: -1.31 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.07 Total: -51.18 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.06 Total: -14.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.99 -8.34 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202477371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.514 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds