Wall clock time and date at job start Mon Mar 30 2020 01:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47039 * 2 1 4 4 C 1.52995 * 109.47156 * 239.99661 * 2 1 3 5 5 N 1.46503 * 109.46970 * 119.99510 * 2 1 3 6 6 C 1.34779 * 119.99550 * 60.00570 * 5 2 1 7 7 O 1.21580 * 120.00195 * 5.10836 * 6 5 2 8 8 N 1.34787 * 119.99321 * 185.11157 * 6 5 2 9 9 C 1.46505 * 119.99376 * 185.27620 * 8 6 5 10 10 C 1.50692 * 109.47433 * 270.00128 * 9 8 6 11 11 H 1.08004 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00117 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00006 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47066 * 59.99878 * 14 12 10 16 16 H 1.48499 * 109.46776 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47052 * 300.00137 * 14 12 10 18 18 C 1.46498 * 120.00359 * 5.27912 * 8 6 5 19 19 C 1.54266 * 110.03082 * 117.87954 * 18 8 6 20 20 C 1.54966 * 104.15844 * 95.75634 * 19 18 8 21 21 C 1.54892 * 102.77792 * 37.88412 * 20 19 18 22 22 C 1.53868 * 110.03234 * 235.10267 * 18 8 6 23 23 H 1.09004 * 109.47028 * 300.00114 * 1 2 3 24 24 H 1.08999 * 109.47479 * 60.00062 * 1 2 3 25 25 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47484 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47077 * 299.99657 * 3 2 1 28 28 H 1.09000 * 109.47638 * 59.99668 * 3 2 1 29 29 H 1.08999 * 109.47280 * 299.99956 * 4 2 1 30 30 H 1.08999 * 109.46700 * 59.99800 * 4 2 1 31 31 H 1.08994 * 109.47346 * 179.97438 * 4 2 1 32 32 H 0.97001 * 120.00197 * 239.99405 * 5 2 1 33 33 H 1.08998 * 109.47101 * 30.00334 * 9 8 6 34 34 H 1.09001 * 109.46380 * 149.99704 * 9 8 6 35 35 H 0.96995 * 119.99655 * 180.02562 * 13 12 10 36 36 H 1.09002 * 110.01367 * 356.49523 * 18 8 6 37 37 H 1.08995 * 110.48623 * 214.39852 * 19 18 8 38 38 H 1.08999 * 110.48712 * 337.05004 * 19 18 8 39 39 H 1.08998 * 110.71781 * 279.57498 * 20 19 18 40 40 H 1.08997 * 110.92687 * 156.29329 * 20 19 18 41 41 H 1.08998 * 110.49270 * 203.40350 * 21 20 19 42 42 H 1.09007 * 110.59813 * 80.81770 * 21 20 19 43 43 H 1.09003 * 110.03449 * 359.94770 * 22 18 8 44 44 H 1.08999 * 110.03506 * 121.38294 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6928 -1.9809 1.4095 7 8 1.0726 -2.5988 0.5658 8 7 2.0547 -2.5862 2.5581 9 6 1.8034 -4.0177 2.7424 10 6 0.4439 -4.2135 3.3622 11 1 -0.1713 -3.3572 3.5960 12 6 -0.0141 -5.4857 3.6319 13 7 0.7358 -6.5284 3.3486 14 14 -1.6991 -5.7284 4.4009 15 1 -2.7379 -5.1548 3.5082 16 1 -1.9537 -7.1794 4.5875 17 1 -1.7454 -5.0438 5.7179 18 6 2.6991 -1.8126 3.6223 19 6 1.8213 -1.8256 4.8908 20 6 2.4081 -2.9770 5.7460 21 6 3.9314 -2.8464 5.4976 22 6 4.0400 -2.4616 4.0076 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6766 -0.2075 -2.1391 31 1 3.1300 -0.7209 -1.2494 32 1 2.5761 -0.2191 1.8347 33 1 1.8377 -4.5200 1.7756 34 1 2.5658 -4.4389 3.3978 35 1 0.4134 -7.4233 3.5379 36 1 2.8621 -0.7869 3.2916 37 1 1.9032 -0.8769 5.4211 38 1 0.7823 -2.0317 4.6336 39 1 2.0412 -3.9423 5.3970 40 1 2.1754 -2.8357 6.8014 41 1 4.4313 -3.7969 5.6836 42 1 4.3566 -2.0635 6.1257 43 1 4.2109 -3.3526 3.4034 44 1 4.8538 -1.7508 3.8639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202477371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:03 Heat of formation + Delta-G solvation = -56.317615 kcal Electronic energy + Delta-G solvation = -22463.458935 eV Core-core repulsion = 19414.720324 eV Total energy + Delta-G solvation = -3048.738611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44441 -39.25281 -37.36399 -35.28190 -34.49893 -32.50865 -29.69570 -29.38901 -28.16329 -28.12143 -27.88115 -24.92021 -22.25172 -21.42669 -21.03526 -19.88839 -18.91330 -18.57221 -17.08090 -16.50520 -16.26723 -15.97737 -15.86026 -15.41146 -15.01913 -14.69548 -14.41299 -14.17265 -13.86958 -13.39283 -13.14032 -13.07701 -12.93212 -12.89668 -12.76046 -12.56428 -12.45943 -12.32251 -12.13332 -12.01713 -11.90483 -11.83358 -11.78036 -11.61513 -11.29045 -11.17050 -10.54956 -10.54089 -9.97327 -9.16436 -8.12252 -6.22339 1.35386 1.39207 1.45599 1.98662 2.39226 2.49460 3.12700 3.19008 3.79085 3.87828 3.94568 4.10396 4.11915 4.22836 4.52282 4.69427 4.73738 4.75970 4.76932 4.77616 4.82602 4.91057 4.92338 4.97401 5.07644 5.08075 5.10637 5.18390 5.22428 5.26144 5.33974 5.43682 5.46392 5.50612 5.57468 5.71138 5.79393 5.88301 6.00425 6.21232 6.33020 6.84951 7.38397 7.42133 7.94591 8.93837 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.007393 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.693650 B = 3786.427977 C = 4778.151420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 C -0.141 4.141 4 C -0.160 4.160 5 N -0.733 5.733 6 C 0.694 3.306 7 O -0.629 6.629 8 N -0.614 5.614 9 C 0.288 3.712 10 C -0.509 4.509 11 H 0.048 0.952 12 C 0.009 3.991 13 N -0.931 5.931 14 Si 0.951 3.049 15 H -0.283 1.283 16 H -0.281 1.281 17 H -0.262 1.262 18 C 0.137 3.863 19 C -0.127 4.127 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.132 4.132 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.402 0.598 33 H -0.017 1.017 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 17.754 0.764 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.093 3.907 3 C -0.198 4.198 4 C -0.218 4.218 5 N -0.393 5.393 6 C 0.396 3.604 7 O -0.510 6.510 8 N -0.349 5.349 9 C 0.166 3.834 10 C -0.548 4.548 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.572 5.572 14 Si 0.777 3.223 15 H -0.209 1.209 16 H -0.207 1.207 17 H -0.187 1.187 18 C 0.033 3.967 19 C -0.165 4.165 20 C -0.166 4.166 21 C -0.148 4.148 22 C -0.170 4.170 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.001 0.999 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.594 17.127 0.176 18.353 hybrid contribution -0.934 -0.998 0.429 1.433 sum 5.659 16.129 0.605 17.104 Atomic orbital electron populations 1.22171 0.95771 1.01427 1.02292 1.20320 0.93393 0.93071 0.83904 1.21997 1.02113 0.91579 1.04141 1.22209 1.00789 1.01210 0.97570 1.45426 1.56962 1.09962 1.26989 1.16217 0.79615 0.82228 0.82360 1.90792 1.47344 1.66020 1.46893 1.47534 1.62212 1.10686 1.14462 1.18453 0.95168 0.75663 0.94068 1.21569 1.02394 0.91773 1.39070 0.93333 1.25681 1.00749 0.95754 0.96744 1.70038 1.38855 0.98626 1.49647 0.85716 0.80297 0.77096 0.79205 1.20890 1.20657 1.18655 1.21868 0.92382 0.94706 0.87737 1.22700 0.99114 0.99174 0.95509 1.22510 0.95910 0.98996 0.99168 1.22275 0.95609 1.01433 0.95527 1.22546 0.96741 1.00659 0.97054 0.92635 0.90025 0.94949 0.90877 0.89258 0.91003 0.94209 0.90306 0.92558 0.75895 0.99882 0.95407 0.92849 0.87861 0.88772 0.93382 0.93574 0.91225 0.92769 0.88908 0.93812 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 8.40 71.98 0.60 -4.07 16 2 C 0.18 4.74 1.06 3.60 0.00 4.75 16 3 C -0.14 -2.24 8.59 71.98 0.62 -1.62 16 4 C -0.16 -4.60 8.40 71.98 0.60 -4.00 16 5 N -0.73 -22.59 4.99 -438.01 -2.18 -24.77 16 6 C 0.69 30.21 7.67 179.05 1.37 31.59 16 7 O -0.63 -33.78 12.21 -3.97 -0.05 -33.83 16 8 N -0.61 -26.61 2.34 -816.01 -1.91 -28.51 16 9 C 0.29 15.70 4.04 85.63 0.35 16.04 16 10 C -0.51 -29.38 7.20 25.60 0.18 -29.19 16 11 H 0.05 2.83 6.48 -2.91 -0.02 2.81 16 12 C 0.01 0.51 5.46 84.65 0.46 0.97 16 13 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 14 Si 0.95 46.23 29.54 68.60 2.03 48.26 16 15 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.14 4.33 3.33 45.71 0.15 4.49 16 19 C -0.13 -4.09 5.88 31.70 0.19 -3.90 16 20 C -0.13 -4.32 6.36 31.91 0.20 -4.11 16 21 C -0.11 -3.02 6.83 31.67 0.22 -2.80 16 22 C -0.13 -3.78 5.97 31.32 0.19 -3.60 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.03 1.28 6.34 -2.39 -0.02 1.26 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.54 6.00 -2.39 -0.01 1.53 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.40 9.59 5.92 -92.71 -0.55 9.04 16 33 H -0.02 -1.09 7.50 -2.39 -0.02 -1.11 16 34 H 0.03 1.55 5.63 -2.39 -0.01 1.54 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.10 2.48 5.53 -2.39 -0.01 2.46 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.93 6.02 -2.39 -0.01 1.92 16 39 H 0.05 2.03 5.91 -2.39 -0.01 2.02 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.04 1.55 6.67 -2.39 -0.02 1.54 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.04 330.88 3.74 -71.30 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.43 Total: 19.99 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.14 Total: 4.54 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -3.81 Total: -110.25 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.05 Total: -33.83 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -75.04 3.74 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202477371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.982 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds