Wall clock time and date at job start Mon Mar 30 2020 00:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 C 1.53003 * 109.47098 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46931 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99808 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00023 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63255 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 126.34238 * 8 7 5 10 10 C 1.53346 * 109.14901 * 54.57640 * 9 8 7 11 11 C 1.53004 * 109.41904 * 178.67276 * 10 9 8 12 12 N 1.46500 * 109.47150 * 295.13157 * 11 10 9 13 13 C 1.36934 * 119.99724 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00570 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99915 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46998 * 120.00159 * 17 15 13 20 20 H 1.48507 * 109.47070 * 240.00019 * 17 15 13 21 21 C 1.53034 * 109.61010 * 298.71225 * 10 9 8 22 22 C 1.46933 * 120.62741 * 0.02562 * 7 5 4 23 23 H 1.09001 * 109.46983 * 59.99784 * 1 2 3 24 24 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47276 * 300.00342 * 1 2 3 26 26 H 1.09005 * 109.46848 * 239.99483 * 2 1 3 27 27 H 1.09001 * 109.46983 * 120.00216 * 2 1 3 28 28 H 1.08996 * 109.46993 * 60.00073 * 3 2 1 29 29 H 1.09001 * 109.47240 * 300.00058 * 3 2 1 30 30 H 1.09001 * 109.46646 * 60.00027 * 4 3 2 31 31 H 1.09001 * 109.47188 * 300.00170 * 4 3 2 32 32 H 1.09002 * 109.58751 * 246.20189 * 8 7 5 33 33 H 1.08996 * 109.58750 * 6.48373 * 8 7 5 34 34 H 1.08997 * 109.49914 * 174.65962 * 9 8 7 35 35 H 1.09002 * 109.49585 * 294.75599 * 9 8 7 36 36 H 1.09001 * 109.42242 * 58.75065 * 10 9 8 37 37 H 1.09001 * 109.46592 * 55.13132 * 11 10 9 38 38 H 1.08997 * 109.47133 * 175.12697 * 11 10 9 39 39 H 0.96999 * 119.99704 * 359.97438 * 12 11 10 40 40 H 0.97003 * 120.00052 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.50232 * 301.42239 * 21 10 9 42 42 H 1.09007 * 109.52628 * 181.33900 * 21 10 9 43 43 H 1.08994 * 109.58580 * 353.38021 * 22 7 5 44 44 H 1.09006 * 109.57831 * 113.65514 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 8 3.2843 3.7850 0.0017 7 7 5.3975 3.1094 0.0014 8 6 5.9025 4.4891 0.0014 9 6 6.8795 4.6597 1.1690 10 6 7.9715 3.5875 1.0719 11 6 8.9696 3.7727 2.2167 12 7 9.6636 5.0530 2.0572 13 6 10.6094 5.4374 2.9697 14 1 10.8435 4.7970 3.8073 15 6 11.2674 6.6502 2.8183 16 7 10.9825 7.4305 1.7973 17 14 12.5582 7.1743 4.0627 18 1 12.6920 6.1277 5.1077 19 1 13.8619 7.3584 3.3759 20 1 12.1463 8.4538 4.6942 21 6 7.3372 2.1981 1.1683 22 6 6.3645 2.0032 0.0003 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9284 -0.8891 31 1 3.9330 0.9287 0.8908 32 1 6.4173 4.6898 -0.9381 33 1 5.0700 5.1830 0.1173 34 1 7.3323 5.6501 1.1228 35 1 6.3433 4.5479 2.1114 36 1 8.4907 3.6842 0.1183 37 1 8.4371 3.7640 3.1678 38 1 9.6965 2.9607 2.1999 39 1 9.4531 5.6283 1.3051 40 1 11.4420 8.2782 1.6917 41 1 6.7968 2.1094 2.1107 42 1 8.1168 1.4377 1.1230 43 1 5.8369 1.0567 0.1179 44 1 6.9150 2.0002 -0.9405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204516627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:28 Heat of formation + Delta-G solvation = -55.915703 kcal Electronic energy + Delta-G solvation = -20634.413390 eV Core-core repulsion = 17585.692207 eV Total energy + Delta-G solvation = -3048.721183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.22825 -37.80876 -35.57396 -34.93044 -32.84045 -31.50032 -30.61040 -30.01452 -26.77750 -24.96815 -23.78312 -22.82943 -21.81499 -21.29635 -20.08354 -18.83284 -17.30018 -16.81343 -16.21160 -15.83848 -15.04068 -14.74565 -14.35444 -14.00683 -13.92715 -13.75177 -13.60817 -13.53701 -12.91952 -12.78737 -12.48756 -12.35636 -12.18237 -11.81613 -11.57094 -11.41612 -11.26044 -11.12542 -10.97394 -10.84624 -10.82763 -10.45371 -10.35176 -10.16389 -9.94396 -9.76921 -9.60785 -8.87163 -8.58468 -6.90886 -5.76336 -3.04532 2.62841 2.99987 3.43443 3.49001 3.51303 4.35882 4.57610 4.61074 4.68396 4.77867 4.91690 4.98674 5.04931 5.09251 5.22267 5.27582 5.31951 5.41623 5.51329 5.55287 5.56639 5.60000 5.64988 5.66789 5.82351 5.87105 5.94241 6.00690 6.02284 6.12163 6.13735 6.16945 6.30402 6.41319 6.51698 6.70721 6.81190 6.92128 7.42316 7.70878 8.18138 8.42928 9.54046 10.12480 10.46982 11.46719 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048038 B = 0.003009 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.726097 B = 9304.510458 C = 9511.699393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.547 6.547 7 N -0.610 5.610 8 C 0.109 3.891 9 C -0.123 4.123 10 C -0.094 4.094 11 C 0.158 3.842 12 N -0.732 5.732 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.127 4.127 22 C 0.108 3.892 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.892 -16.366 -5.684 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.180 4.180 5 C 0.300 3.700 6 O -0.425 6.425 7 N -0.344 5.344 8 C -0.013 4.013 9 C -0.161 4.161 10 C -0.113 4.113 11 C 0.031 3.969 12 N -0.377 5.377 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.166 4.166 22 C -0.015 4.015 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.196 -15.874 -5.537 23.345 hybrid contribution 0.915 0.521 0.459 1.148 sum -15.282 -15.354 -5.078 22.250 Atomic orbital electron populations 1.21760 0.95758 1.01456 1.02038 1.21550 0.96104 0.96664 1.01940 1.21384 0.92843 0.96483 1.03606 1.21726 0.97942 0.94212 1.04104 1.20724 0.81789 0.91700 0.75799 1.90680 1.54850 1.46661 1.50310 1.48212 1.05435 1.07825 1.72891 1.21697 0.98202 0.82305 0.99056 1.21966 0.95843 1.00730 0.97581 1.21360 0.95963 0.93409 1.00578 1.20665 0.92179 0.89584 0.94497 1.42386 1.45693 1.18498 1.31077 1.19276 1.12574 1.01383 1.03675 0.91213 1.24742 1.00580 0.97363 0.98436 1.69665 1.45448 1.12482 1.30660 0.86120 0.81368 0.78207 0.80522 1.20597 1.21890 1.21879 1.21921 0.98346 0.98191 0.98120 1.21799 0.91073 0.89239 0.99433 0.92696 0.92837 0.92644 0.92040 0.91981 0.91227 0.91286 0.89095 0.88961 0.91584 0.89300 0.89436 0.91948 0.91000 0.96488 0.96431 0.78246 0.93574 0.91524 0.90574 0.89990 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.11 -0.95 4.50 -26.73 -0.12 -1.07 16 4 C -0.14 -1.23 4.05 -27.88 -0.11 -1.35 16 5 C 0.51 6.67 7.70 -10.99 -0.08 6.58 16 6 O -0.55 -9.23 15.39 5.56 0.09 -9.14 16 7 N -0.61 -7.62 2.97 -172.74 -0.51 -8.14 16 8 C 0.11 1.55 6.42 -3.71 -0.02 1.52 16 9 C -0.12 -1.94 5.27 -26.45 -0.14 -2.08 16 10 C -0.09 -1.45 2.19 -90.42 -0.20 -1.65 16 11 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 12 N -0.73 -18.42 5.32 -59.91 -0.32 -18.74 16 13 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 16 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 17 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 C -0.13 -1.47 5.37 -26.59 -0.14 -1.62 16 22 C 0.11 1.05 6.34 -3.68 -0.02 1.03 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 31 H 0.09 0.68 7.69 -51.93 -0.40 0.28 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 34 H 0.09 1.59 7.16 -51.93 -0.37 1.22 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.07 6.85 -40.82 -0.28 9.79 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -32.50 347.21 -8.74 -41.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.02 Total: 4.19 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.90 Total: -4.57 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.50 -8.74 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204516627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.683 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds