Wall clock time and date at job start Mon Mar 30 2020 00:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 C 1.53003 * 109.47098 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46931 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99808 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00023 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63255 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 126.34238 * 8 7 5 10 10 C 1.53346 * 109.14901 * 54.57640 * 9 8 7 11 11 C 1.53004 * 109.41904 * 178.67276 * 10 9 8 12 12 N 1.46500 * 109.47150 * 295.13157 * 11 10 9 13 13 C 1.36934 * 119.99724 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00570 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99915 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46998 * 120.00159 * 17 15 13 20 20 H 1.48507 * 109.47070 * 240.00019 * 17 15 13 21 21 C 1.53034 * 109.61010 * 298.71225 * 10 9 8 22 22 C 1.46933 * 120.62741 * 0.02562 * 7 5 4 23 23 H 1.09001 * 109.46983 * 59.99784 * 1 2 3 24 24 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47276 * 300.00342 * 1 2 3 26 26 H 1.09005 * 109.46848 * 239.99483 * 2 1 3 27 27 H 1.09001 * 109.46983 * 120.00216 * 2 1 3 28 28 H 1.08996 * 109.46993 * 60.00073 * 3 2 1 29 29 H 1.09001 * 109.47240 * 300.00058 * 3 2 1 30 30 H 1.09001 * 109.46646 * 60.00027 * 4 3 2 31 31 H 1.09001 * 109.47188 * 300.00170 * 4 3 2 32 32 H 1.09002 * 109.58751 * 246.20189 * 8 7 5 33 33 H 1.08996 * 109.58750 * 6.48373 * 8 7 5 34 34 H 1.08997 * 109.49914 * 174.65962 * 9 8 7 35 35 H 1.09002 * 109.49585 * 294.75599 * 9 8 7 36 36 H 1.09001 * 109.42242 * 58.75065 * 10 9 8 37 37 H 1.09001 * 109.46592 * 55.13132 * 11 10 9 38 38 H 1.08997 * 109.47133 * 175.12697 * 11 10 9 39 39 H 0.96999 * 119.99704 * 359.97438 * 12 11 10 40 40 H 0.97003 * 120.00052 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.50232 * 301.42239 * 21 10 9 42 42 H 1.09007 * 109.52628 * 181.33900 * 21 10 9 43 43 H 1.08994 * 109.58580 * 353.38021 * 22 7 5 44 44 H 1.09006 * 109.57831 * 113.65514 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 8 3.2843 3.7850 0.0017 7 7 5.3975 3.1094 0.0014 8 6 5.9025 4.4891 0.0014 9 6 6.8795 4.6597 1.1690 10 6 7.9715 3.5875 1.0719 11 6 8.9696 3.7727 2.2167 12 7 9.6636 5.0530 2.0572 13 6 10.6094 5.4374 2.9697 14 1 10.8435 4.7970 3.8073 15 6 11.2674 6.6502 2.8183 16 7 10.9825 7.4305 1.7973 17 14 12.5582 7.1743 4.0627 18 1 12.6920 6.1277 5.1077 19 1 13.8619 7.3584 3.3759 20 1 12.1463 8.4538 4.6942 21 6 7.3372 2.1981 1.1683 22 6 6.3645 2.0032 0.0003 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9284 -0.8891 31 1 3.9330 0.9287 0.8908 32 1 6.4173 4.6898 -0.9381 33 1 5.0700 5.1830 0.1173 34 1 7.3323 5.6501 1.1228 35 1 6.3433 4.5479 2.1114 36 1 8.4907 3.6842 0.1183 37 1 8.4371 3.7640 3.1678 38 1 9.6965 2.9607 2.1999 39 1 9.4531 5.6283 1.3051 40 1 11.4420 8.2782 1.6917 41 1 6.7968 2.1094 2.1107 42 1 8.1168 1.4377 1.1230 43 1 5.8369 1.0567 0.1179 44 1 6.9150 2.0002 -0.9405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204516627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:28 Heat of formation + Delta-G solvation = -75.796640 kcal Electronic energy + Delta-G solvation = -20635.275492 eV Core-core repulsion = 17585.692207 eV Total energy + Delta-G solvation = -3049.583285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25679 -38.99103 -36.59198 -36.21457 -34.46898 -32.53959 -32.20338 -30.97905 -28.23978 -25.98527 -25.33256 -23.90145 -23.22524 -22.01102 -21.27468 -19.88469 -19.14260 -17.99519 -17.00136 -16.85485 -16.67786 -15.87063 -15.60910 -15.44539 -15.32843 -14.86748 -14.64666 -14.48323 -14.17905 -13.93928 -13.68640 -13.42558 -13.15789 -13.12123 -12.93277 -12.77765 -12.26679 -12.16563 -12.12179 -12.04090 -11.91946 -11.82154 -11.67572 -11.42070 -11.40617 -11.37805 -10.94063 -10.73128 -9.64059 -8.99245 -7.96079 -5.24296 1.46236 1.47153 1.57193 1.65022 2.04401 2.55303 3.37561 3.54054 3.76149 3.86034 3.90962 3.96231 4.08314 4.11573 4.29346 4.33890 4.35202 4.47171 4.49270 4.64339 4.65270 4.72952 4.75832 4.83613 4.90704 4.95394 4.98854 5.00748 5.06124 5.11379 5.13676 5.16230 5.28522 5.32701 5.41827 5.47136 5.52592 5.54750 5.60742 6.26879 6.47128 7.19581 7.32966 8.10458 8.32937 9.27744 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048038 B = 0.003009 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.726097 B = 9304.510458 C = 9511.699393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.131 4.131 5 C 0.503 3.497 6 O -0.596 6.596 7 N -0.611 5.611 8 C 0.117 3.883 9 C -0.114 4.114 10 C -0.085 4.085 11 C 0.156 3.844 12 N -0.745 5.745 13 C -0.243 4.243 14 H 0.075 0.925 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.295 1.295 21 C -0.120 4.120 22 C 0.107 3.893 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.012 0.988 38 H 0.026 0.974 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.757 -19.480 -5.673 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.142 4.142 4 C -0.170 4.170 5 C 0.294 3.706 6 O -0.477 6.477 7 N -0.343 5.343 8 C -0.007 4.007 9 C -0.152 4.152 10 C -0.104 4.104 11 C 0.030 3.970 12 N -0.388 5.388 13 C -0.375 4.375 14 H 0.093 0.907 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.219 1.219 20 H -0.222 1.222 21 C -0.158 4.158 22 C -0.014 4.014 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.140 0.860 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.059 -19.057 -5.511 25.523 hybrid contribution 0.835 1.472 0.473 1.757 sum -15.224 -17.585 -5.039 23.799 Atomic orbital electron populations 1.21793 0.96001 1.02064 1.01502 1.21517 0.95911 0.95021 1.03162 1.21350 0.93363 0.97717 1.01778 1.21792 0.97383 0.91285 1.06589 1.21589 0.81381 0.93127 0.74512 1.90663 1.56049 1.48547 1.52462 1.48328 1.06054 1.07553 1.72369 1.21439 0.97021 0.83753 0.98445 1.21803 0.96195 0.99405 0.97846 1.21273 0.94737 0.95866 0.98475 1.20859 0.92809 0.87301 0.96060 1.42621 1.45680 1.20252 1.30273 1.19679 1.12557 1.01364 1.03942 0.90742 1.25579 1.03146 0.97744 1.00550 1.69821 1.46872 1.12786 1.32612 0.85071 0.78499 0.77717 0.78467 1.19008 1.21899 1.22201 1.21890 0.99176 0.95650 0.99129 1.22052 0.90520 0.89684 0.99174 0.93174 0.91612 0.93367 0.90576 0.90849 0.93384 0.93013 0.86071 0.86506 0.90855 0.91240 0.92713 0.93084 0.91291 0.96984 0.95650 0.79370 0.94034 0.91540 0.88347 0.86034 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.30 5.93 30.59 0.18 -1.12 16 3 C -0.10 -1.72 4.50 30.60 0.14 -1.58 16 4 C -0.13 -1.88 4.05 29.85 0.12 -1.76 16 5 C 0.50 12.40 7.70 87.66 0.67 13.08 16 6 O -0.60 -20.45 15.39 -3.03 -0.05 -20.49 16 7 N -0.61 -14.13 2.97 -818.81 -2.43 -16.57 16 8 C 0.12 3.33 6.42 86.36 0.55 3.88 16 9 C -0.11 -3.69 5.27 30.78 0.16 -3.53 16 10 C -0.08 -2.52 2.19 -10.66 -0.02 -2.55 16 11 C 0.16 6.08 5.65 86.38 0.49 6.57 16 12 N -0.75 -38.02 5.32 -343.45 -1.83 -39.84 16 13 C -0.24 -13.74 9.99 84.04 0.84 -12.90 16 14 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 16 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 17 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 21 C -0.12 -2.39 5.37 30.69 0.16 -2.23 16 22 C 0.11 1.67 6.34 86.38 0.55 2.22 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.64 8.14 -2.38 -0.02 0.63 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 29 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 30 H 0.12 1.07 7.94 -2.39 -0.02 1.05 16 31 H 0.12 1.17 7.69 -2.39 -0.02 1.15 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.26 7.00 -2.39 -0.02 2.24 16 34 H 0.05 2.11 7.16 -2.39 -0.02 2.10 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.37 20.26 6.85 -92.71 -0.63 19.63 16 40 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.12 1.01 5.93 -2.39 -0.01 1.00 16 44 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -72.61 347.21 3.35 -69.26 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.32 Total: 23.89 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.03 Total: -5.13 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -3.98 Total: -116.16 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -72.61 3.35 -69.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204516627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.534 kcal (2) G-P(sol) polarization free energy of solvation -72.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds