Wall clock time and date at job start Mon Mar 30 2020 00:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46796 * 2 1 4 4 C 1.52998 * 109.46813 * 119.99559 * 2 1 3 5 5 C 1.50691 * 109.47334 * 239.99725 * 2 1 3 6 6 O 1.21282 * 120.00373 * 0.96626 * 5 2 1 7 7 N 1.34780 * 120.00132 * 180.96740 * 5 2 1 8 8 C 1.46928 * 120.62781 * 354.34616 * 7 5 2 9 9 C 1.53626 * 108.53605 * 126.37044 * 8 7 5 10 10 C 1.53041 * 109.24449 * 54.86160 * 9 8 7 11 11 C 1.52994 * 109.45878 * 178.48704 * 10 9 8 12 12 N 1.46499 * 109.47427 * 295.06256 * 11 10 9 13 13 C 1.36938 * 120.00156 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00231 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99863 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99852 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47278 * 89.99854 * 17 15 13 19 19 H 1.48499 * 109.47240 * 209.99971 * 17 15 13 20 20 H 1.48503 * 109.47171 * 329.99949 * 17 15 13 21 21 C 1.53039 * 109.53277 * 298.50641 * 10 9 8 22 22 C 1.46926 * 120.63063 * 174.63112 * 7 5 2 23 23 H 1.09006 * 109.47284 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47401 * 60.00501 * 1 2 3 25 25 H 1.08996 * 109.47679 * 300.00386 * 1 2 3 26 26 H 1.08999 * 109.47366 * 74.34201 * 3 2 1 27 27 H 1.09005 * 109.47215 * 194.33369 * 3 2 1 28 28 H 1.08999 * 109.47498 * 314.33489 * 3 2 1 29 29 H 1.08997 * 109.47062 * 48.59823 * 4 2 1 30 30 H 1.09006 * 109.47191 * 168.59722 * 4 2 1 31 31 H 1.09004 * 109.47655 * 288.59405 * 4 2 1 32 32 H 1.08990 * 109.58899 * 246.20044 * 8 7 5 33 33 H 1.08994 * 109.58800 * 6.63270 * 8 7 5 34 34 H 1.09002 * 109.63580 * 294.86125 * 9 8 7 35 35 H 1.09007 * 109.45713 * 174.74250 * 9 8 7 36 36 H 1.08997 * 109.45117 * 58.52274 * 10 9 8 37 37 H 1.09000 * 109.47403 * 55.06843 * 11 10 9 38 38 H 1.09004 * 109.47274 * 175.06552 * 11 10 9 39 39 H 0.97000 * 119.99427 * 0.02562 * 12 11 10 40 40 H 0.97004 * 119.99768 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.50015 * 301.41297 * 21 10 9 42 42 H 1.09000 * 109.52135 * 181.33755 * 21 10 9 43 43 H 1.08995 * 109.58765 * 353.36969 * 22 7 5 44 44 H 1.09000 * 109.58427 * 113.65662 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2303 6 8 1.2444 -1.1560 -2.0375 7 7 3.3573 -0.8506 -1.4338 8 6 4.3249 -0.2110 -0.5319 9 6 5.2991 -1.2834 -0.0209 10 6 5.9325 -1.9999 -1.2156 11 6 6.9319 -3.0435 -0.7127 12 7 8.0399 -2.3699 -0.0310 13 6 9.0620 -3.1059 0.5064 14 1 9.0515 -4.1830 0.4274 15 6 10.1116 -2.4676 1.1528 16 7 10.1242 -1.1551 1.2496 17 14 11.5062 -3.4716 1.8853 18 1 12.5719 -3.6549 0.8674 19 1 12.0638 -2.7590 3.0628 20 1 10.9917 -4.7990 2.3079 21 6 4.8408 -2.6925 -2.0345 22 6 3.8614 -1.6409 -2.5652 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 1.8995 1.8775 0.9895 27 1 3.0998 1.4532 -0.2544 28 1 1.4839 2.0245 -0.7350 29 1 1.5202 -1.6732 1.3568 30 1 3.1108 -0.9005 1.1536 31 1 1.8521 -0.1035 2.1276 32 1 4.8754 0.5585 -1.0730 33 1 3.7983 0.2374 0.3104 34 1 4.7601 -2.0054 0.5925 35 1 6.0796 -0.8104 0.5752 36 1 6.4504 -1.2734 -1.8417 37 1 6.4334 -3.7182 -0.0167 38 1 7.3181 -3.6136 -1.5577 39 1 8.0491 -1.4026 0.0403 40 1 10.8578 -0.7090 1.7010 41 1 4.3061 -3.4013 -1.4022 42 1 5.2946 -3.2225 -2.8720 43 1 3.0288 -2.1361 -3.0648 44 1 4.3726 -0.9851 -3.2699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206888183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:31 Heat of formation + Delta-G solvation = -29.227274 kcal Electronic energy + Delta-G solvation = -21661.598270 eV Core-core repulsion = 18614.034384 eV Total energy + Delta-G solvation = -3047.563886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79078 -37.84110 -36.00613 -34.89277 -32.76745 -31.05985 -30.30877 -27.58653 -27.33707 -26.83480 -24.21683 -23.19101 -22.60759 -21.03908 -20.01765 -18.65366 -17.13741 -16.59960 -16.07775 -15.37895 -14.90885 -14.52000 -14.47529 -14.18609 -13.95304 -13.64243 -13.57487 -12.93977 -12.77190 -12.50345 -12.44727 -12.35103 -12.13232 -11.94483 -11.86380 -11.65792 -11.14659 -11.11685 -11.02006 -10.89942 -10.83478 -10.40904 -10.28593 -10.20014 -9.97811 -9.65569 -9.49488 -8.88088 -8.57359 -6.92515 -5.78236 -3.06139 2.62784 3.00767 3.42582 3.48046 3.49374 4.29730 4.57712 4.58638 4.70401 4.84432 4.95733 5.05505 5.11268 5.18310 5.35726 5.37005 5.42241 5.48786 5.53390 5.55329 5.61851 5.65166 5.70193 5.74536 5.83798 5.91875 5.94988 5.99335 6.06224 6.08490 6.13636 6.20520 6.28688 6.45817 6.47935 6.64506 6.80574 6.91587 7.43324 7.69315 8.18163 8.41270 9.52514 10.10601 10.45466 11.44787 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.004027 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.924190 B = 6950.773230 C = 7398.632393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.160 4.160 4 C -0.158 4.158 5 C 0.524 3.476 6 O -0.549 6.549 7 N -0.605 5.605 8 C 0.083 3.917 9 C -0.127 4.127 10 C -0.093 4.093 11 C 0.158 3.842 12 N -0.732 5.732 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.125 4.125 22 C 0.112 3.888 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.900 4.346 -2.776 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.089 4.089 3 C -0.217 4.217 4 C -0.216 4.216 5 C 0.313 3.687 6 O -0.427 6.427 7 N -0.338 5.338 8 C -0.039 4.039 9 C -0.165 4.165 10 C -0.112 4.112 11 C 0.030 3.970 12 N -0.376 5.376 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.164 4.164 22 C -0.010 4.010 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.211 3.963 -3.153 17.941 hybrid contribution 1.009 -0.232 0.461 1.133 sum -16.203 3.730 -2.692 16.843 Atomic orbital electron populations 1.21654 0.92103 1.02656 1.01802 1.20750 0.97815 0.96455 0.93877 1.22318 1.02636 0.93717 1.03076 1.22256 1.02902 1.00686 0.95707 1.20588 0.81752 0.79311 0.87081 1.90649 1.55056 1.50326 1.46681 1.48097 1.05403 1.51144 1.29166 1.22573 0.91169 0.95929 0.94184 1.22058 0.98419 0.97776 0.98245 1.21295 0.95415 0.98300 0.96211 1.20671 0.88349 0.93310 0.94639 1.42371 1.22015 1.06283 1.66943 1.19242 0.98728 0.90887 1.28123 0.91279 1.24716 0.98958 0.95627 1.01661 1.69650 1.33297 1.06723 1.48663 0.86201 0.82524 0.79027 0.78519 1.21753 1.21774 1.20794 1.21906 0.96492 0.97652 1.00344 1.21606 0.97892 0.93448 0.88047 0.92091 0.92109 0.92133 0.91209 0.90482 0.92057 0.92040 0.90306 0.91304 0.91162 0.87603 0.91647 0.89358 0.91012 0.96448 0.96401 0.78284 0.93552 0.91655 0.90702 0.89430 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 7.69 37.16 0.29 -0.96 16 2 C -0.09 -0.90 0.75 -155.67 -0.12 -1.01 16 3 C -0.16 -1.40 8.08 37.16 0.30 -1.10 16 4 C -0.16 -1.52 8.10 37.16 0.30 -1.22 16 5 C 0.52 7.10 6.48 -10.99 -0.07 7.03 16 6 O -0.55 -9.19 15.42 5.56 0.09 -9.11 16 7 N -0.61 -7.66 2.96 -172.51 -0.51 -8.17 16 8 C 0.08 0.97 3.89 -3.48 -0.01 0.95 16 9 C -0.13 -1.79 4.94 -26.38 -0.13 -1.93 16 10 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 11 C 0.16 3.10 5.65 -4.05 -0.02 3.08 16 12 N -0.73 -18.03 5.32 -59.91 -0.32 -18.35 16 13 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 17 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.13 -1.64 5.36 -26.61 -0.14 -1.78 16 22 C 0.11 1.42 6.41 -3.71 -0.02 1.40 16 23 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 24 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 27 H 0.08 0.68 4.68 -51.93 -0.24 0.43 16 28 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.08 0.81 4.00 -51.93 -0.21 0.60 16 31 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 32 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 33 H 0.11 1.06 2.92 -51.93 -0.15 0.91 16 34 H 0.06 0.94 7.38 -51.93 -0.38 0.56 16 35 H 0.09 1.43 7.15 -51.92 -0.37 1.06 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 9.77 6.84 -40.82 -0.28 9.49 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -31.53 332.13 -7.55 -39.07 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.43 Total: 5.76 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.08 Total: -4.42 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.10 Total: -53.51 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.53 -7.55 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206888183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.847 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds