Wall clock time and date at job start Mon Mar 30 2020 00:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46796 * 2 1 4 4 C 1.52998 * 109.46813 * 119.99559 * 2 1 3 5 5 C 1.50691 * 109.47334 * 239.99725 * 2 1 3 6 6 O 1.21282 * 120.00373 * 0.96626 * 5 2 1 7 7 N 1.34780 * 120.00132 * 180.96740 * 5 2 1 8 8 C 1.46928 * 120.62781 * 354.34616 * 7 5 2 9 9 C 1.53626 * 108.53605 * 126.37044 * 8 7 5 10 10 C 1.53041 * 109.24449 * 54.86160 * 9 8 7 11 11 C 1.52994 * 109.45878 * 178.48704 * 10 9 8 12 12 N 1.46499 * 109.47427 * 295.06256 * 11 10 9 13 13 C 1.36938 * 120.00156 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00231 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99863 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99852 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47278 * 89.99854 * 17 15 13 19 19 H 1.48499 * 109.47240 * 209.99971 * 17 15 13 20 20 H 1.48503 * 109.47171 * 329.99949 * 17 15 13 21 21 C 1.53039 * 109.53277 * 298.50641 * 10 9 8 22 22 C 1.46926 * 120.63063 * 174.63112 * 7 5 2 23 23 H 1.09006 * 109.47284 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47401 * 60.00501 * 1 2 3 25 25 H 1.08996 * 109.47679 * 300.00386 * 1 2 3 26 26 H 1.08999 * 109.47366 * 74.34201 * 3 2 1 27 27 H 1.09005 * 109.47215 * 194.33369 * 3 2 1 28 28 H 1.08999 * 109.47498 * 314.33489 * 3 2 1 29 29 H 1.08997 * 109.47062 * 48.59823 * 4 2 1 30 30 H 1.09006 * 109.47191 * 168.59722 * 4 2 1 31 31 H 1.09004 * 109.47655 * 288.59405 * 4 2 1 32 32 H 1.08990 * 109.58899 * 246.20044 * 8 7 5 33 33 H 1.08994 * 109.58800 * 6.63270 * 8 7 5 34 34 H 1.09002 * 109.63580 * 294.86125 * 9 8 7 35 35 H 1.09007 * 109.45713 * 174.74250 * 9 8 7 36 36 H 1.08997 * 109.45117 * 58.52274 * 10 9 8 37 37 H 1.09000 * 109.47403 * 55.06843 * 11 10 9 38 38 H 1.09004 * 109.47274 * 175.06552 * 11 10 9 39 39 H 0.97000 * 119.99427 * 0.02562 * 12 11 10 40 40 H 0.97004 * 119.99768 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.50015 * 301.41297 * 21 10 9 42 42 H 1.09000 * 109.52135 * 181.33755 * 21 10 9 43 43 H 1.08995 * 109.58765 * 353.36969 * 22 7 5 44 44 H 1.09000 * 109.58427 * 113.65662 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2303 6 8 1.2444 -1.1560 -2.0375 7 7 3.3573 -0.8506 -1.4338 8 6 4.3249 -0.2110 -0.5319 9 6 5.2991 -1.2834 -0.0209 10 6 5.9325 -1.9999 -1.2156 11 6 6.9319 -3.0435 -0.7127 12 7 8.0399 -2.3699 -0.0310 13 6 9.0620 -3.1059 0.5064 14 1 9.0515 -4.1830 0.4274 15 6 10.1116 -2.4676 1.1528 16 7 10.1242 -1.1551 1.2496 17 14 11.5062 -3.4716 1.8853 18 1 12.5719 -3.6549 0.8674 19 1 12.0638 -2.7590 3.0628 20 1 10.9917 -4.7990 2.3079 21 6 4.8408 -2.6925 -2.0345 22 6 3.8614 -1.6409 -2.5652 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 1.8995 1.8775 0.9895 27 1 3.0998 1.4532 -0.2544 28 1 1.4839 2.0245 -0.7350 29 1 1.5202 -1.6732 1.3568 30 1 3.1108 -0.9005 1.1536 31 1 1.8521 -0.1035 2.1276 32 1 4.8754 0.5585 -1.0730 33 1 3.7983 0.2374 0.3104 34 1 4.7601 -2.0054 0.5925 35 1 6.0796 -0.8104 0.5752 36 1 6.4504 -1.2734 -1.8417 37 1 6.4334 -3.7182 -0.0167 38 1 7.3181 -3.6136 -1.5577 39 1 8.0491 -1.4026 0.0403 40 1 10.8578 -0.7090 1.7010 41 1 4.3061 -3.4013 -1.4022 42 1 5.2946 -3.2225 -2.8720 43 1 3.0288 -2.1361 -3.0648 44 1 4.3726 -0.9851 -3.2699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206888183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:30 Heat of formation + Delta-G solvation = -48.492939 kcal Electronic energy + Delta-G solvation = -21662.433692 eV Core-core repulsion = 18614.034384 eV Total energy + Delta-G solvation = -3048.399308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.80806 -39.05076 -36.96549 -36.49024 -34.37847 -32.34530 -31.90044 -28.36422 -28.27024 -28.11199 -25.82544 -24.30172 -24.05296 -22.31147 -21.16342 -19.74839 -19.06405 -17.66221 -17.05087 -16.71267 -16.37834 -15.82714 -15.55614 -15.40657 -15.19883 -15.15423 -14.79462 -14.14016 -14.04136 -13.89379 -13.45240 -13.29462 -13.12744 -12.98125 -12.84777 -12.80112 -12.72377 -12.53773 -12.20000 -12.16297 -11.94766 -11.91402 -11.85072 -11.63640 -11.32092 -11.23489 -10.91008 -10.51620 -9.65489 -8.96839 -7.93862 -5.21556 1.48760 1.49600 1.58064 1.59200 2.01339 2.57246 3.39375 3.39772 3.75251 3.77147 3.82309 3.88572 3.95085 4.09130 4.22348 4.27989 4.37347 4.43725 4.58365 4.64206 4.70029 4.73116 4.78275 4.81298 4.85024 4.90165 4.94594 4.97408 5.02374 5.05649 5.07667 5.17225 5.23533 5.29750 5.34714 5.36079 5.48624 5.54581 5.60382 6.29135 6.41019 7.14055 7.36130 8.11963 8.36775 9.29416 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.004027 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.924190 B = 6950.773230 C = 7398.632393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 C -0.159 4.159 4 C -0.156 4.156 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.605 5.605 8 C 0.091 3.909 9 C -0.120 4.120 10 C -0.084 4.084 11 C 0.157 3.843 12 N -0.741 5.741 13 C -0.248 4.248 14 H 0.071 0.929 15 C -0.070 4.070 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.272 1.272 21 C -0.114 4.114 22 C 0.113 3.887 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 4.684 -2.277 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.215 4.215 4 C -0.213 4.213 5 C 0.307 3.693 6 O -0.467 6.467 7 N -0.336 5.336 8 C -0.030 4.030 9 C -0.159 4.159 10 C -0.103 4.103 11 C 0.031 3.969 12 N -0.384 5.384 13 C -0.380 4.380 14 H 0.089 0.911 15 C -0.263 4.263 16 N -0.616 5.616 17 Si 0.799 3.201 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.197 1.197 21 C -0.153 4.153 22 C -0.009 4.009 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.710 4.278 -2.663 18.413 hybrid contribution 1.125 -0.385 0.269 1.219 sum -16.585 3.893 -2.395 17.203 Atomic orbital electron populations 1.21647 0.91786 1.01994 1.02559 1.20817 0.98089 0.97278 0.92536 1.22326 1.02372 0.92361 1.04486 1.22254 1.02134 1.00817 0.96132 1.21232 0.81552 0.78872 0.87610 1.90629 1.55904 1.52004 1.48195 1.48175 1.05521 1.50866 1.29085 1.22602 0.90588 0.95004 0.94821 1.21946 0.98253 0.98218 0.97454 1.21181 0.95043 0.97229 0.96806 1.20805 0.87919 0.94251 0.93948 1.42533 1.22691 1.06039 1.67170 1.19610 0.99450 0.91288 1.27610 0.91135 1.25480 1.01434 0.96667 1.02708 1.69790 1.33960 1.08114 1.49766 0.85200 0.79515 0.77950 0.77451 1.21538 1.22002 1.19711 1.21802 0.95705 0.97557 1.00234 1.21590 0.97476 0.93532 0.88326 0.93494 0.93066 0.89610 0.88976 0.90568 0.92052 0.92722 0.91087 0.88972 0.90205 0.85579 0.91949 0.91421 0.91320 0.96770 0.96577 0.79058 0.93954 0.92104 0.89598 0.90089 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 7.69 71.98 0.55 -1.70 16 2 C -0.08 -1.60 0.75 -52.93 -0.04 -1.64 16 3 C -0.16 -2.33 8.08 71.98 0.58 -1.75 16 4 C -0.16 -2.67 8.10 71.98 0.58 -2.09 16 5 C 0.52 13.50 6.48 87.65 0.57 14.07 16 6 O -0.59 -19.54 15.42 -3.04 -0.05 -19.58 16 7 N -0.60 -14.54 2.96 -818.10 -2.42 -16.96 16 8 C 0.09 1.97 3.89 86.51 0.34 2.31 16 9 C -0.12 -3.32 4.94 30.82 0.15 -3.17 16 10 C -0.08 -2.50 2.19 -10.77 -0.02 -2.53 16 11 C 0.16 6.13 5.65 86.38 0.49 6.62 16 12 N -0.74 -36.65 5.32 -343.45 -1.83 -38.48 16 13 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 14 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 15 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 16 N -0.97 -57.59 13.06 21.65 0.28 -57.31 16 17 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.11 -2.86 5.36 30.67 0.16 -2.70 16 22 C 0.11 2.73 6.41 86.36 0.55 3.28 16 23 H 0.05 0.98 8.11 -2.38 -0.02 0.96 16 24 H 0.05 1.03 8.09 -2.39 -0.02 1.01 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 0.97 7.92 -2.39 -0.02 0.95 16 27 H 0.08 1.13 4.68 -2.38 -0.01 1.12 16 28 H 0.06 0.92 8.06 -2.39 -0.02 0.90 16 29 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 30 H 0.07 1.33 4.00 -2.38 -0.01 1.32 16 31 H 0.09 1.15 7.94 -2.38 -0.02 1.14 16 32 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.13 2.25 2.92 -2.39 -0.01 2.24 16 34 H 0.06 1.75 7.38 -2.39 -0.02 1.73 16 35 H 0.07 2.18 7.15 -2.38 -0.02 2.16 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.38 19.42 6.84 -92.71 -0.63 18.78 16 40 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 2.11 7.04 -2.39 -0.02 2.09 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.10 332.13 3.59 -63.51 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.34 Total: 26.93 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.22 Total: -5.67 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -3.96 Total: -112.75 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.10 3.59 -63.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206888183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.021 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds