Wall clock time and date at job start Mon Mar 30 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47046 * 2 1 4 4 C 1.52995 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47197 * 304.99517 * 4 3 2 6 6 C 1.53003 * 109.47461 * 64.99517 * 4 3 2 7 7 C 1.50697 * 109.47389 * 184.99680 * 4 3 2 8 8 O 1.21273 * 120.00191 * 263.36897 * 7 4 3 9 9 N 1.34781 * 119.99750 * 83.36125 * 7 4 3 10 10 C 1.46921 * 120.63211 * 5.03189 * 9 7 4 11 11 C 1.53189 * 108.78122 * 233.58565 * 10 9 7 12 12 C 1.53042 * 109.31343 * 305.37200 * 11 10 9 13 13 C 1.53033 * 109.53980 * 61.35948 * 12 11 10 14 14 H 1.09001 * 109.49751 * 58.58924 * 13 12 11 15 15 N 1.46499 * 109.49747 * 178.65310 * 13 12 11 16 16 C 1.36936 * 120.00450 * 274.99688 * 15 13 12 17 17 H 1.08002 * 119.99191 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00575 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00181 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47348 * 90.00351 * 20 18 16 22 22 H 1.48500 * 109.47433 * 210.00203 * 20 18 16 23 23 H 1.48497 * 109.47135 * 330.00078 * 20 18 16 24 24 C 1.46931 * 120.62952 * 184.76053 * 9 7 4 25 25 H 1.09002 * 109.47335 * 60.00729 * 1 2 3 26 26 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47670 * 300.00180 * 1 2 3 28 28 H 1.09001 * 109.46973 * 239.99547 * 2 1 3 29 29 H 1.09005 * 109.47121 * 119.99747 * 2 1 3 30 30 H 1.08997 * 109.47122 * 59.99950 * 3 2 1 31 31 H 1.09002 * 109.46458 * 299.99808 * 3 2 1 32 32 H 1.08996 * 109.46822 * 293.91594 * 6 4 3 33 33 H 1.09000 * 109.46975 * 173.91162 * 6 4 3 34 34 H 1.08999 * 109.46652 * 53.90965 * 6 4 3 35 35 H 1.08999 * 109.58653 * 353.37745 * 10 9 7 36 36 H 1.09008 * 109.58147 * 113.80005 * 10 9 7 37 37 H 1.09003 * 109.49559 * 65.31662 * 11 10 9 38 38 H 1.08997 * 109.50347 * 185.38532 * 11 10 9 39 39 H 1.08995 * 109.46037 * 181.38307 * 12 11 10 40 40 H 1.09002 * 109.45440 * 301.33977 * 12 11 10 41 41 H 0.97006 * 119.99958 * 95.00300 * 15 13 12 42 42 H 0.96997 * 119.99924 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.57994 * 246.20491 * 24 9 7 44 44 H 1.09007 * 109.58442 * 6.62068 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8330 -1.3082 7 6 4.0723 2.8579 0.1231 8 8 4.3884 3.4782 -0.8699 9 7 4.1703 3.4344 1.3374 10 6 3.8965 2.6622 2.5570 11 6 2.8484 3.4085 3.3884 12 6 3.3299 4.8384 3.6446 13 6 3.4976 5.5688 2.3103 14 1 2.5471 5.5746 1.7767 15 7 3.9276 6.9472 2.5580 16 6 2.9981 7.9175 2.8219 17 1 1.9480 7.6665 2.8478 18 6 3.4055 9.2234 3.0572 19 7 4.6854 9.5292 3.0262 20 14 2.1376 10.5468 3.4178 21 1 1.9011 10.6200 4.8821 22 1 2.6379 11.8576 2.9312 23 1 0.8656 10.2151 2.7269 24 6 4.5586 4.8456 1.4670 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.8078 -0.2218 -1.3475 33 1 5.1640 0.9310 -1.3564 34 1 3.6295 1.3557 -2.1523 35 1 3.5157 1.6770 2.2879 36 1 4.8141 2.5561 3.1359 37 1 1.9040 3.4346 2.8446 38 1 2.7063 2.8960 4.3398 39 1 2.5972 5.3641 4.2567 40 1 4.2864 4.8114 4.1665 41 1 4.8708 7.1726 2.5351 42 1 4.9700 10.4419 3.1902 43 1 5.5290 4.9137 1.9587 44 1 4.6148 5.3013 0.4784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207718328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:56 Heat of formation + Delta-G solvation = -49.363834 kcal Electronic energy + Delta-G solvation = -21453.655469 eV Core-core repulsion = 18405.218396 eV Total energy + Delta-G solvation = -3048.437073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23332 -37.49510 -36.10712 -34.42965 -32.28100 -31.90369 -31.16078 -28.39948 -26.79806 -25.51418 -24.16430 -22.98758 -22.03963 -21.09043 -19.85957 -18.47952 -17.26751 -17.17802 -15.76414 -15.36580 -15.24780 -14.70711 -14.14598 -14.05267 -13.89592 -13.48529 -13.43113 -13.18415 -12.92936 -12.80257 -12.52381 -12.29326 -12.06661 -12.00129 -11.43794 -11.26169 -11.10363 -10.95640 -10.89911 -10.86739 -10.71810 -10.58723 -10.40693 -10.33151 -10.07291 -9.71948 -9.39771 -8.91029 -8.35350 -6.98480 -5.77502 -3.07124 2.78605 3.17863 3.43372 3.48788 3.50490 4.44049 4.58803 4.63391 4.70662 4.89204 4.95711 4.99082 5.16546 5.21806 5.31326 5.33470 5.49639 5.53599 5.56251 5.58221 5.65044 5.72381 5.75452 5.76997 5.80019 5.85045 5.95255 5.98247 6.05696 6.14851 6.16897 6.19611 6.27036 6.40219 6.56081 6.73843 6.88904 7.05437 7.63987 7.69192 8.37634 8.41346 9.51643 10.07221 10.42293 11.45057 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.004253 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.657892 B = 6582.269164 C = 6865.809323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.111 4.111 5 H 0.091 0.909 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.722 5.722 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.106 3.894 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -21.708 -2.512 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.132 4.132 5 H 0.109 0.891 6 C -0.190 4.190 7 C 0.303 3.697 8 O -0.420 6.420 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.363 5.363 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.017 4.017 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.122 -21.229 -3.034 21.837 hybrid contribution -0.329 0.922 0.486 1.093 sum -4.450 -20.307 -2.549 20.944 Atomic orbital electron populations 1.21775 0.95737 1.01499 1.02090 1.21560 0.95950 0.96274 1.02170 1.21592 0.92362 0.97588 1.03301 1.21370 0.97356 0.93732 1.00768 0.89124 1.21659 1.01417 0.99855 0.96114 1.20634 0.77609 0.88708 0.82755 1.90683 1.49538 1.65169 1.36572 1.48139 1.68015 1.12044 1.05679 1.21822 0.99167 0.94764 0.86004 1.21936 0.98363 0.97565 0.99301 1.22279 1.01289 0.93427 1.00781 1.20555 0.95588 0.85596 0.92435 0.93283 1.42319 1.07118 1.02136 1.84689 1.19204 0.89231 0.88311 1.40263 0.91184 1.24743 0.96049 0.97356 1.02648 1.69663 1.13239 1.18883 1.56214 0.86189 0.80484 0.81626 0.77884 1.21715 1.21733 1.20746 1.22077 0.98063 0.79212 1.02372 0.92676 0.92816 0.92605 0.91625 0.91944 0.91216 0.91147 0.92063 0.92433 0.91665 0.90038 0.91502 0.91888 0.91409 0.91603 0.92503 0.78197 0.93456 0.91817 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.11 -1.08 4.50 -26.73 -0.12 -1.20 16 4 C -0.11 -1.19 1.88 -91.77 -0.17 -1.36 16 5 H 0.09 0.79 6.35 -51.93 -0.33 0.46 16 6 C -0.13 -1.36 8.20 37.16 0.30 -1.05 16 7 C 0.52 7.90 6.82 -10.98 -0.07 7.82 16 8 O -0.54 -10.57 15.62 5.56 0.09 -10.49 16 9 N -0.61 -9.07 2.97 -172.50 -0.51 -9.58 16 10 C 0.11 1.21 6.12 -3.71 -0.02 1.19 16 11 C -0.13 -1.66 6.08 -26.61 -0.16 -1.83 16 12 C -0.14 -2.34 5.46 -26.69 -0.15 -2.48 16 13 C 0.17 3.40 2.93 -67.59 -0.20 3.21 16 14 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.72 -18.19 5.13 -53.10 -0.27 -18.46 16 16 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.11 1.93 5.92 -3.48 -0.02 1.91 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.46 6.70 -51.93 -0.35 0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.71 7.81 -51.93 -0.41 0.30 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.47 6.87 -51.93 -0.36 0.11 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.08 0.72 5.20 -51.93 -0.27 0.45 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.89 7.03 -51.93 -0.37 1.53 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -31.94 344.35 -8.30 -40.24 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.85 Total: 6.01 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.64 Total: -2.85 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.06 Total: -55.56 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.94 -8.30 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207718328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.126 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds