Wall clock time and date at job start Mon Mar 30 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47046 * 2 1 4 4 C 1.52995 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47197 * 304.99517 * 4 3 2 6 6 C 1.53003 * 109.47461 * 64.99517 * 4 3 2 7 7 C 1.50697 * 109.47389 * 184.99680 * 4 3 2 8 8 O 1.21273 * 120.00191 * 263.36897 * 7 4 3 9 9 N 1.34781 * 119.99750 * 83.36125 * 7 4 3 10 10 C 1.46921 * 120.63211 * 5.03189 * 9 7 4 11 11 C 1.53189 * 108.78122 * 233.58565 * 10 9 7 12 12 C 1.53042 * 109.31343 * 305.37200 * 11 10 9 13 13 C 1.53033 * 109.53980 * 61.35948 * 12 11 10 14 14 H 1.09001 * 109.49751 * 58.58924 * 13 12 11 15 15 N 1.46499 * 109.49747 * 178.65310 * 13 12 11 16 16 C 1.36936 * 120.00450 * 274.99688 * 15 13 12 17 17 H 1.08002 * 119.99191 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00575 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00181 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47348 * 90.00351 * 20 18 16 22 22 H 1.48500 * 109.47433 * 210.00203 * 20 18 16 23 23 H 1.48497 * 109.47135 * 330.00078 * 20 18 16 24 24 C 1.46931 * 120.62952 * 184.76053 * 9 7 4 25 25 H 1.09002 * 109.47335 * 60.00729 * 1 2 3 26 26 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47670 * 300.00180 * 1 2 3 28 28 H 1.09001 * 109.46973 * 239.99547 * 2 1 3 29 29 H 1.09005 * 109.47121 * 119.99747 * 2 1 3 30 30 H 1.08997 * 109.47122 * 59.99950 * 3 2 1 31 31 H 1.09002 * 109.46458 * 299.99808 * 3 2 1 32 32 H 1.08996 * 109.46822 * 293.91594 * 6 4 3 33 33 H 1.09000 * 109.46975 * 173.91162 * 6 4 3 34 34 H 1.08999 * 109.46652 * 53.90965 * 6 4 3 35 35 H 1.08999 * 109.58653 * 353.37745 * 10 9 7 36 36 H 1.09008 * 109.58147 * 113.80005 * 10 9 7 37 37 H 1.09003 * 109.49559 * 65.31662 * 11 10 9 38 38 H 1.08997 * 109.50347 * 185.38532 * 11 10 9 39 39 H 1.08995 * 109.46037 * 181.38307 * 12 11 10 40 40 H 1.09002 * 109.45440 * 301.33977 * 12 11 10 41 41 H 0.97006 * 119.99958 * 95.00300 * 15 13 12 42 42 H 0.96997 * 119.99924 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.57994 * 246.20491 * 24 9 7 44 44 H 1.09007 * 109.58442 * 6.62068 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8330 -1.3082 7 6 4.0723 2.8579 0.1231 8 8 4.3884 3.4782 -0.8699 9 7 4.1703 3.4344 1.3374 10 6 3.8965 2.6622 2.5570 11 6 2.8484 3.4085 3.3884 12 6 3.3299 4.8384 3.6446 13 6 3.4976 5.5688 2.3103 14 1 2.5471 5.5746 1.7767 15 7 3.9276 6.9472 2.5580 16 6 2.9981 7.9175 2.8219 17 1 1.9480 7.6665 2.8478 18 6 3.4055 9.2234 3.0572 19 7 4.6854 9.5292 3.0262 20 14 2.1376 10.5468 3.4178 21 1 1.9011 10.6200 4.8821 22 1 2.6379 11.8576 2.9312 23 1 0.8656 10.2151 2.7269 24 6 4.5586 4.8456 1.4670 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.8078 -0.2218 -1.3475 33 1 5.1640 0.9310 -1.3564 34 1 3.6295 1.3557 -2.1523 35 1 3.5157 1.6770 2.2879 36 1 4.8141 2.5561 3.1359 37 1 1.9040 3.4346 2.8446 38 1 2.7063 2.8960 4.3398 39 1 2.5972 5.3641 4.2567 40 1 4.2864 4.8114 4.1665 41 1 4.8708 7.1726 2.5351 42 1 4.9700 10.4419 3.1902 43 1 5.5290 4.9137 1.9587 44 1 4.6148 5.3013 0.4784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207718328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:56 Heat of formation + Delta-G solvation = -69.422727 kcal Electronic energy + Delta-G solvation = -21454.525288 eV Core-core repulsion = 18405.218396 eV Total energy + Delta-G solvation = -3049.306891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44248 -38.85583 -37.00714 -36.17041 -33.83967 -32.81994 -32.64208 -30.12053 -27.57221 -26.69623 -25.97130 -24.11517 -23.40101 -21.88334 -21.27069 -19.73224 -19.12201 -18.40569 -16.88640 -16.77647 -16.40938 -16.06311 -15.65245 -15.36942 -15.19237 -14.76373 -14.67959 -14.51009 -14.08722 -13.85603 -13.68934 -13.42971 -12.98545 -12.90218 -12.81928 -12.77939 -12.39061 -12.27365 -12.16144 -12.02755 -11.97233 -11.84529 -11.76805 -11.69976 -11.53324 -11.33820 -10.92860 -10.60719 -9.67180 -9.05028 -7.97525 -5.27439 1.44872 1.47097 1.55328 1.59388 1.98162 2.54739 3.35293 3.47655 3.78970 3.85907 3.90191 4.02387 4.06008 4.11418 4.25344 4.33972 4.35011 4.35270 4.43882 4.61514 4.66044 4.76996 4.81548 4.82642 4.87391 4.91795 4.98450 5.02435 5.10792 5.12522 5.17883 5.28579 5.33991 5.39581 5.42100 5.45555 5.51964 5.54222 5.59570 6.24078 6.46506 7.17734 7.29786 8.02497 8.26983 9.25939 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.004253 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.657892 B = 6582.269164 C = 6865.809323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.107 4.107 4 C -0.100 4.100 5 H 0.126 0.874 6 C -0.132 4.132 7 C 0.506 3.494 8 O -0.595 6.595 9 N -0.605 5.605 10 C 0.102 3.898 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.030 0.970 15 N -0.737 5.737 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.117 3.883 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.066 0.934 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -24.835 -1.259 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.145 4.145 4 C -0.121 4.121 5 H 0.143 0.857 6 C -0.189 4.189 7 C 0.296 3.704 8 O -0.475 6.475 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.162 4.162 12 C -0.168 4.168 13 C 0.059 3.941 14 H 0.048 0.952 15 N -0.377 5.377 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.007 4.007 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.205 0.795 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.392 -24.428 -1.759 25.078 hybrid contribution 0.047 1.846 0.053 1.848 sum -5.345 -22.581 -1.706 23.268 Atomic orbital electron populations 1.21792 0.95802 1.02156 1.01564 1.21539 0.95835 0.94387 1.03530 1.21585 0.91397 0.99313 1.02242 1.21443 0.97876 0.90426 1.02363 0.85658 1.21675 1.00597 1.01551 0.95080 1.21640 0.76475 0.90387 0.81872 1.90661 1.51721 1.66824 1.38337 1.48249 1.67557 1.10613 1.07271 1.22159 0.99824 0.95613 0.84344 1.21893 0.98394 0.94491 1.01378 1.22071 1.00912 0.96050 0.97791 1.20709 0.95002 0.83970 0.94397 0.95174 1.42510 1.06201 1.04016 1.84964 1.19548 0.89795 0.89102 1.38812 0.90890 1.25563 0.97930 0.99578 1.03500 1.69821 1.15132 1.18971 1.58027 0.85141 0.78371 0.78409 0.77849 1.20979 1.22209 1.19654 1.21639 0.97612 0.81499 0.99934 0.93659 0.91554 0.92788 0.90938 0.89837 0.91328 0.93372 0.88677 0.93426 0.93770 0.86099 0.89885 0.91873 0.87817 0.93539 0.92615 0.79542 0.93943 0.91580 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.28 5.69 30.59 0.17 -1.10 16 3 C -0.11 -1.82 4.50 30.59 0.14 -1.69 16 4 C -0.10 -1.88 1.88 -11.54 -0.02 -1.90 16 5 H 0.13 1.51 6.35 -2.38 -0.02 1.50 16 6 C -0.13 -2.43 8.20 71.98 0.59 -1.84 16 7 C 0.51 15.20 6.82 87.66 0.60 15.80 16 8 O -0.59 -24.04 15.62 -3.01 -0.05 -24.09 16 9 N -0.60 -17.43 2.97 -818.06 -2.43 -19.86 16 10 C 0.10 1.95 6.12 86.36 0.53 2.47 16 11 C -0.12 -2.67 6.08 30.67 0.19 -2.49 16 12 C -0.13 -4.24 5.46 30.62 0.17 -4.08 16 13 C 0.17 6.93 2.93 45.21 0.13 7.06 16 14 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 15 N -0.74 -38.45 5.13 -321.90 -1.65 -40.10 16 16 C -0.24 -13.70 9.93 84.03 0.83 -12.87 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 19 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 20 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.12 4.41 5.92 86.51 0.51 4.92 16 25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.73 6.70 -2.39 -0.02 0.71 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 1.19 7.81 -2.39 -0.02 1.17 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.11 6.87 -2.39 -0.02 1.09 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.00 8.07 -2.39 -0.02 0.98 16 35 H 0.12 1.43 5.20 -2.39 -0.01 1.41 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.37 20.84 7.80 -92.70 -0.72 20.11 16 42 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.06 2.51 7.03 -2.38 -0.02 2.49 16 Total: -1.00 -73.28 344.35 3.44 -69.84 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.24 Total: 26.02 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.02 Total: -0.64 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -3.79 Total: -120.05 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -73.28 3.44 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207718328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.419 kcal (2) G-P(sol) polarization free energy of solvation -73.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds