Wall clock time and date at job start Mon Mar 30 2020 00:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47551 * 2 1 4 4 C 1.52998 * 109.47551 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47142 * 305.00392 * 4 3 2 6 6 C 1.53008 * 109.46734 * 65.00146 * 4 3 2 7 7 C 1.50699 * 109.47585 * 184.99939 * 4 3 2 8 8 O 1.21285 * 119.99695 * 0.02562 * 7 4 3 9 9 N 1.34770 * 120.00448 * 180.02562 * 7 4 3 10 10 C 1.46501 * 119.99834 * 0.02562 * 9 7 4 11 11 C 1.46496 * 120.00410 * 180.02562 * 9 7 4 12 12 C 1.53000 * 109.47388 * 95.45208 * 11 9 7 13 13 H 1.08994 * 112.96287 * 66.56451 * 12 11 9 14 14 C 1.53952 * 113.76758 * 294.89315 * 12 11 9 15 15 C 1.53950 * 86.28856 * 222.09169 * 14 12 11 16 16 N 1.47580 * 113.76807 * 198.25055 * 12 11 9 17 17 C 1.36931 * 134.49643 * 318.92395 * 16 12 11 18 18 H 1.08001 * 119.99793 * 355.66372 * 17 16 12 19 19 C 1.38804 * 120.00432 * 175.65814 * 17 16 12 20 20 N 1.31621 * 120.00312 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00414 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46956 * 90.00145 * 21 19 17 23 23 H 1.48495 * 109.47401 * 210.00059 * 21 19 17 24 24 H 1.48504 * 109.46671 * 330.00573 * 21 19 17 25 25 H 1.09001 * 109.46870 * 299.99527 * 1 2 3 26 26 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47088 * 59.99612 * 1 2 3 28 28 H 1.09004 * 109.47088 * 120.00388 * 2 1 3 29 29 H 1.09001 * 109.46570 * 240.00015 * 2 1 3 30 30 H 1.09004 * 109.47241 * 300.00294 * 3 2 1 31 31 H 1.09001 * 109.47171 * 60.00384 * 3 2 1 32 32 H 1.08997 * 109.47105 * 60.00224 * 6 4 3 33 33 H 1.09001 * 109.47036 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.46962 * 299.99766 * 6 4 3 35 35 H 1.09003 * 109.47254 * 91.84860 * 10 9 7 36 36 H 1.09000 * 109.47206 * 211.84959 * 10 9 7 37 37 H 1.08998 * 109.47059 * 331.84916 * 10 9 7 38 38 H 1.08999 * 109.47424 * 215.45121 * 11 9 7 39 39 H 1.09003 * 109.46978 * 335.44998 * 11 9 7 40 40 H 1.09003 * 113.74202 * 336.43453 * 14 12 11 41 41 H 1.08994 * 113.74165 * 107.63610 * 14 12 11 42 42 H 1.08997 * 113.77011 * 137.90639 * 15 14 12 43 43 H 1.09000 * 113.76655 * 269.19202 * 15 14 12 44 44 H 0.96998 * 120.00794 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8530 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 4.0724 2.8578 0.1245 8 8 3.2843 3.7761 0.2048 9 7 5.3974 3.1031 0.1459 10 6 6.3495 1.9939 0.0483 11 6 5.8858 4.4790 0.2668 12 6 6.1852 4.7868 1.7354 13 1 7.0190 4.2063 2.1300 14 6 4.9384 4.7748 2.6385 15 6 5.5283 6.0338 3.2995 16 7 6.2694 6.2292 2.0356 17 6 6.8144 7.3119 1.3985 18 1 7.3805 7.1747 0.4891 19 6 6.6393 8.5857 1.9215 20 7 5.9497 8.7529 3.0300 21 14 7.3822 10.0627 1.0520 22 1 6.4069 10.6014 0.0703 23 1 7.7101 11.1117 2.0505 24 1 8.6202 9.6490 0.3437 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.7176 1.4219 -2.1485 33 1 5.1705 0.8321 -1.3059 34 1 3.7172 -0.1912 -1.3960 35 1 6.6107 1.8302 -0.9972 36 1 7.2491 2.2364 0.6139 37 1 5.8969 1.0898 0.4556 38 1 6.7961 4.5945 -0.3214 39 1 5.1256 5.1680 -0.1012 40 1 4.0067 4.9561 2.1027 41 1 4.8858 3.9121 3.3025 42 1 4.7906 6.8103 3.5021 43 1 6.1684 5.8215 4.1559 44 1 5.8270 9.6431 3.3953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231312688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:13 Heat of formation + Delta-G solvation = 7.630940 kcal Electronic energy + Delta-G solvation = -21454.466569 eV Core-core repulsion = 18408.500976 eV Total energy + Delta-G solvation = -3045.965594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06304 -37.75432 -35.95001 -35.22054 -32.30643 -31.89467 -28.43491 -27.74807 -26.81553 -26.34895 -23.91506 -23.18165 -22.13710 -20.68620 -18.94253 -18.73405 -16.89857 -16.55468 -16.01001 -15.56527 -15.16507 -14.68950 -14.23577 -13.89635 -13.84095 -13.67211 -13.40910 -12.86410 -12.49923 -12.48057 -12.29914 -12.23788 -11.97363 -11.68078 -11.36210 -11.25757 -11.04723 -10.93272 -10.85630 -10.74174 -10.62315 -10.59411 -10.37157 -9.76136 -9.63861 -9.50220 -9.28158 -8.69739 -8.23919 -6.76977 -5.66833 -3.00084 2.93250 3.24740 3.44190 3.48326 3.50355 4.49334 4.55948 4.65074 4.80460 5.03674 5.05052 5.13063 5.17934 5.29271 5.37886 5.43602 5.52627 5.54141 5.59825 5.65734 5.70525 5.75260 5.75715 5.83654 5.96049 5.97963 6.03630 6.05650 6.20635 6.23427 6.33140 6.46554 6.64598 6.81580 6.83862 6.90028 7.36711 7.57679 7.71651 7.71998 8.08914 8.51155 9.12648 9.80021 10.71246 11.49467 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.004161 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.520045 B = 6727.060625 C = 6998.826535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.109 4.109 5 H 0.093 0.907 6 C -0.157 4.157 7 C 0.513 3.487 8 O -0.530 6.530 9 N -0.610 5.610 10 C 0.078 3.922 11 C 0.115 3.885 12 C 0.129 3.871 13 H 0.039 0.961 14 C -0.156 4.156 15 C 0.155 3.845 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 -20.356 -6.432 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.131 4.131 5 H 0.111 0.889 6 C -0.214 4.214 7 C 0.301 3.699 8 O -0.405 6.405 9 N -0.344 5.344 10 C -0.066 4.066 11 C -0.008 4.008 12 C 0.021 3.979 13 H 0.057 0.943 14 C -0.195 4.195 15 C 0.030 3.970 16 N -0.327 5.327 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.518 -19.487 -6.427 21.011 hybrid contribution 0.775 0.794 -0.316 1.154 sum -3.743 -18.693 -6.743 20.221 Atomic orbital electron populations 1.21763 0.95878 1.01279 1.02078 1.21593 0.95935 0.96859 1.01825 1.21427 0.92433 0.96346 1.03674 1.21300 0.97631 0.94029 1.00102 0.88880 1.22084 1.02199 1.00981 0.96114 1.20588 0.82035 0.91094 0.76227 1.90716 1.54699 1.46264 1.48863 1.47808 1.05651 1.07976 1.72924 1.21910 0.93747 0.89771 1.01148 1.21806 0.99759 0.81020 0.98221 1.22506 0.94996 0.87617 0.92792 0.94328 1.23790 0.98563 0.98271 0.98828 1.22296 0.93313 0.93063 0.88290 1.45948 1.66145 0.99944 1.20642 1.18968 1.26674 0.84086 1.05193 0.90517 1.24770 1.00784 0.97132 0.97727 1.69829 1.44343 1.21191 1.21261 0.86157 0.78580 0.82770 0.78459 1.21544 1.21725 1.20786 0.92612 0.92986 0.92736 0.92136 0.91922 0.91380 0.90980 0.92267 0.91165 0.91600 0.92679 0.91148 0.91090 0.91729 0.88907 0.89547 0.94162 0.90591 0.96138 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.04 5.69 -26.74 -0.15 -1.19 16 3 C -0.10 -1.12 4.03 -26.74 -0.11 -1.23 16 4 C -0.11 -1.19 1.92 -91.77 -0.18 -1.37 16 5 H 0.09 0.88 7.41 -51.93 -0.38 0.50 16 6 C -0.16 -1.34 8.57 37.16 0.32 -1.02 16 7 C 0.51 7.97 6.65 -10.99 -0.07 7.90 16 8 O -0.53 -10.61 13.84 5.55 0.08 -10.53 16 9 N -0.61 -9.05 2.79 -181.57 -0.51 -9.56 16 10 C 0.08 0.79 8.82 59.85 0.53 1.31 16 11 C 0.12 2.17 5.41 -4.04 -0.02 2.15 16 12 C 0.13 2.75 4.57 -66.86 -0.31 2.44 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -3.37 7.25 -25.79 -0.19 -3.55 16 15 C 0.16 3.96 7.63 -2.84 -0.02 3.94 16 16 N -0.60 -16.02 3.58 -169.70 -0.61 -16.63 16 17 C -0.22 -6.37 10.51 -15.07 -0.16 -6.53 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -28.28 11.32 55.49 0.63 -27.65 16 21 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.53 4.56 -51.93 -0.24 0.30 16 34 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 35 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 36 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.07 0.57 5.86 -51.93 -0.30 0.26 16 38 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 39 H 0.09 2.07 7.26 -51.93 -0.38 1.69 16 40 H 0.09 2.02 6.56 -51.93 -0.34 1.68 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 2.14 6.99 -51.93 -0.36 1.78 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -33.59 341.30 -8.04 -41.63 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.66 Total: -1.80 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.08 Total: 1.66 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.49 Total: -53.84 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.59 -8.04 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.259 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds