Wall clock time and date at job start Mon Mar 30 2020 00:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47551 * 2 1 4 4 C 1.52998 * 109.47551 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47142 * 305.00392 * 4 3 2 6 6 C 1.53008 * 109.46734 * 65.00146 * 4 3 2 7 7 C 1.50699 * 109.47585 * 184.99939 * 4 3 2 8 8 O 1.21285 * 119.99695 * 0.02562 * 7 4 3 9 9 N 1.34770 * 120.00448 * 180.02562 * 7 4 3 10 10 C 1.46501 * 119.99834 * 0.02562 * 9 7 4 11 11 C 1.46496 * 120.00410 * 180.02562 * 9 7 4 12 12 C 1.53000 * 109.47388 * 95.45208 * 11 9 7 13 13 H 1.08994 * 112.96287 * 66.56451 * 12 11 9 14 14 C 1.53952 * 113.76758 * 294.89315 * 12 11 9 15 15 C 1.53950 * 86.28856 * 222.09169 * 14 12 11 16 16 N 1.47580 * 113.76807 * 198.25055 * 12 11 9 17 17 C 1.36931 * 134.49643 * 318.92395 * 16 12 11 18 18 H 1.08001 * 119.99793 * 355.66372 * 17 16 12 19 19 C 1.38804 * 120.00432 * 175.65814 * 17 16 12 20 20 N 1.31621 * 120.00312 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00414 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46956 * 90.00145 * 21 19 17 23 23 H 1.48495 * 109.47401 * 210.00059 * 21 19 17 24 24 H 1.48504 * 109.46671 * 330.00573 * 21 19 17 25 25 H 1.09001 * 109.46870 * 299.99527 * 1 2 3 26 26 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47088 * 59.99612 * 1 2 3 28 28 H 1.09004 * 109.47088 * 120.00388 * 2 1 3 29 29 H 1.09001 * 109.46570 * 240.00015 * 2 1 3 30 30 H 1.09004 * 109.47241 * 300.00294 * 3 2 1 31 31 H 1.09001 * 109.47171 * 60.00384 * 3 2 1 32 32 H 1.08997 * 109.47105 * 60.00224 * 6 4 3 33 33 H 1.09001 * 109.47036 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.46962 * 299.99766 * 6 4 3 35 35 H 1.09003 * 109.47254 * 91.84860 * 10 9 7 36 36 H 1.09000 * 109.47206 * 211.84959 * 10 9 7 37 37 H 1.08998 * 109.47059 * 331.84916 * 10 9 7 38 38 H 1.08999 * 109.47424 * 215.45121 * 11 9 7 39 39 H 1.09003 * 109.46978 * 335.44998 * 11 9 7 40 40 H 1.09003 * 113.74202 * 336.43453 * 14 12 11 41 41 H 1.08994 * 113.74165 * 107.63610 * 14 12 11 42 42 H 1.08997 * 113.77011 * 137.90639 * 15 14 12 43 43 H 1.09000 * 113.76655 * 269.19202 * 15 14 12 44 44 H 0.96998 * 120.00794 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8530 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 4.0724 2.8578 0.1245 8 8 3.2843 3.7761 0.2048 9 7 5.3974 3.1031 0.1459 10 6 6.3495 1.9939 0.0483 11 6 5.8858 4.4790 0.2668 12 6 6.1852 4.7868 1.7354 13 1 7.0190 4.2063 2.1300 14 6 4.9384 4.7748 2.6385 15 6 5.5283 6.0338 3.2995 16 7 6.2694 6.2292 2.0356 17 6 6.8144 7.3119 1.3985 18 1 7.3805 7.1747 0.4891 19 6 6.6393 8.5857 1.9215 20 7 5.9497 8.7529 3.0300 21 14 7.3822 10.0627 1.0520 22 1 6.4069 10.6014 0.0703 23 1 7.7101 11.1117 2.0505 24 1 8.6202 9.6490 0.3437 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.7176 1.4219 -2.1485 33 1 5.1705 0.8321 -1.3059 34 1 3.7172 -0.1912 -1.3960 35 1 6.6107 1.8302 -0.9972 36 1 7.2491 2.2364 0.6139 37 1 5.8969 1.0898 0.4556 38 1 6.7961 4.5945 -0.3214 39 1 5.1256 5.1680 -0.1012 40 1 4.0067 4.9561 2.1027 41 1 4.8858 3.9121 3.3025 42 1 4.7906 6.8103 3.5021 43 1 6.1684 5.8215 4.1559 44 1 5.8270 9.6431 3.3953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231312688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:13 Heat of formation + Delta-G solvation = -13.309844 kcal Electronic energy + Delta-G solvation = -21455.374630 eV Core-core repulsion = 18408.500976 eV Total energy + Delta-G solvation = -3046.873654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29723 -39.52255 -36.87910 -36.50276 -34.25045 -32.92405 -29.88409 -29.78068 -27.75739 -27.20173 -25.37324 -25.01051 -23.46846 -21.62290 -20.82670 -19.87558 -18.70382 -17.88504 -17.32048 -16.86480 -16.46887 -16.24683 -15.82396 -15.26000 -15.09401 -14.75163 -14.37953 -14.16850 -13.92716 -13.66452 -13.50302 -13.32370 -13.03861 -12.99969 -12.91671 -12.58622 -12.56893 -12.33256 -12.26379 -12.05121 -11.81031 -11.78927 -11.63256 -11.59951 -11.35571 -11.27724 -10.84668 -10.53694 -9.57110 -8.88326 -7.88216 -5.22911 1.42799 1.46574 1.54169 1.75167 2.05439 2.49332 3.30836 3.39894 3.61989 3.85834 3.90980 4.01950 4.18163 4.29319 4.34224 4.37166 4.41648 4.45494 4.49925 4.64652 4.72309 4.80218 4.83305 4.85922 4.89917 4.96395 5.00703 5.03964 5.08326 5.11094 5.17010 5.24512 5.30129 5.34540 5.49224 5.52757 5.54608 5.58387 5.76584 5.95570 6.54721 6.91074 7.32467 7.62034 8.58848 9.28521 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.004161 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.520045 B = 6727.060625 C = 6998.826535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.099 4.099 5 H 0.120 0.880 6 C -0.152 4.152 7 C 0.503 3.497 8 O -0.587 6.587 9 N -0.608 5.608 10 C 0.068 3.932 11 C 0.129 3.871 12 C 0.137 3.863 13 H 0.064 0.936 14 C -0.132 4.132 15 C 0.149 3.851 16 N -0.630 5.630 17 C -0.228 4.228 18 H 0.086 0.914 19 C -0.073 4.073 20 N -0.957 5.957 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.295 1.295 24 H -0.264 1.264 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.022 0.978 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -23.599 -7.632 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.138 4.138 4 C -0.120 4.120 5 H 0.138 0.862 6 C -0.209 4.209 7 C 0.293 3.707 8 O -0.466 6.466 9 N -0.340 5.340 10 C -0.073 4.073 11 C 0.004 3.996 12 C 0.030 3.970 13 H 0.081 0.919 14 C -0.170 4.170 15 C 0.024 3.976 16 N -0.357 5.357 17 C -0.357 4.357 18 H 0.104 0.896 19 C -0.266 4.266 20 N -0.606 5.606 21 Si 0.807 3.193 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.188 1.188 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.001 -22.808 -7.655 24.245 hybrid contribution 0.286 1.737 0.060 1.761 sum -2.716 -21.072 -7.595 22.563 Atomic orbital electron populations 1.21792 0.96031 1.02109 1.01371 1.21558 0.95813 0.94746 1.03280 1.21400 0.92964 0.97977 1.01459 1.21346 0.97115 0.90974 1.02594 0.86249 1.22098 1.03163 1.01854 0.93756 1.21566 0.81732 0.92590 0.74811 1.90700 1.56197 1.48400 1.51336 1.47871 1.06438 1.07408 1.72275 1.22286 0.93019 0.88896 1.03092 1.21327 0.98915 0.83002 0.96346 1.22672 0.95092 0.84856 0.94393 0.91911 1.23481 0.97624 0.97378 0.98515 1.22229 0.92877 0.93873 0.88616 1.46299 1.66167 1.01989 1.21204 1.19413 1.25808 0.85096 1.05344 0.89586 1.25682 1.01945 1.00142 0.98781 1.70042 1.46261 1.21241 1.23047 0.85064 0.78228 0.78846 0.77120 1.21614 1.22110 1.18819 0.93612 0.91319 0.93301 0.90819 0.90112 0.93344 0.93688 0.93794 0.89588 0.88890 0.90436 0.90625 0.88115 0.90290 0.93283 0.91838 0.90863 0.94414 0.95982 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -1.64 5.69 30.59 0.17 -1.47 16 3 C -0.10 -2.13 4.03 30.59 0.12 -2.01 16 4 C -0.10 -1.91 1.92 -11.54 -0.02 -1.94 16 5 H 0.12 1.72 7.41 -2.39 -0.02 1.71 16 6 C -0.15 -2.02 8.57 71.98 0.62 -1.40 16 7 C 0.50 15.21 6.65 87.66 0.58 15.79 16 8 O -0.59 -24.42 13.84 -3.04 -0.04 -24.46 16 9 N -0.61 -16.81 2.79 -846.77 -2.36 -19.18 16 10 C 0.07 1.09 8.82 127.77 1.13 2.21 16 11 C 0.13 4.78 5.41 86.38 0.47 5.24 16 12 C 0.14 5.70 4.57 45.09 0.21 5.91 16 13 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 14 C -0.13 -5.69 7.25 31.25 0.23 -5.47 16 15 C 0.15 7.83 7.63 86.44 0.66 8.49 16 16 N -0.63 -34.12 3.58 -690.81 -2.48 -36.59 16 17 C -0.23 -13.30 10.51 84.03 0.88 -12.41 16 18 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 19 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 20 N -0.96 -61.04 11.32 21.65 0.25 -60.80 16 21 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.08 0.87 6.57 -2.39 -0.02 0.86 16 30 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 1.19 7.95 -2.39 -0.02 1.17 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.88 4.56 -2.39 -0.01 0.87 16 34 H 0.09 0.78 6.57 -2.39 -0.02 0.77 16 35 H 0.08 0.94 7.07 -2.39 -0.02 0.93 16 36 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 37 H 0.10 1.04 5.86 -2.39 -0.01 1.03 16 38 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 39 H 0.05 2.26 7.26 -2.39 -0.02 2.24 16 40 H 0.06 3.07 6.56 -2.39 -0.02 3.05 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.04 2.24 6.99 -2.39 -0.02 2.23 16 43 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.58 341.30 4.57 -73.01 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.95 Total: 10.86 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.23 Total: 7.48 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.59 Total: -116.56 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -77.58 4.57 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.699 kcal (2) G-P(sol) polarization free energy of solvation -77.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds