Wall clock time and date at job start Mon Mar 30 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.52995 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47259 * 54.99766 * 4 3 2 6 6 C 1.53005 * 109.47228 * 294.99799 * 4 3 2 7 7 C 1.50701 * 109.47303 * 174.99801 * 4 3 2 8 8 O 1.21275 * 119.99765 * 0.02562 * 7 4 3 9 9 N 1.34778 * 120.00073 * 179.97438 * 7 4 3 10 10 C 1.46500 * 120.00023 * 355.71854 * 9 7 4 11 11 C 1.46494 * 119.99855 * 175.71214 * 9 7 4 12 12 C 1.52999 * 109.47072 * 92.43610 * 11 9 7 13 13 H 1.08997 * 112.77808 * 313.84958 * 12 11 9 14 14 C 1.53501 * 113.46925 * 84.63830 * 12 11 9 15 15 C 1.53498 * 83.34346 * 140.84571 * 14 12 11 16 16 N 1.47069 * 87.98742 * 333.93180 * 15 14 12 17 17 C 1.36936 * 136.05668 * 206.86473 * 16 15 14 18 18 H 1.08000 * 120.00182 * 172.73237 * 17 16 15 19 19 C 1.38815 * 119.99919 * 352.72633 * 17 16 15 20 20 N 1.31613 * 120.00007 * 163.70119 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 343.69763 * 19 17 16 22 22 H 1.48505 * 109.46951 * 86.33931 * 21 19 17 23 23 H 1.48498 * 109.47335 * 206.33649 * 21 19 17 24 24 H 1.48496 * 109.47387 * 326.33865 * 21 19 17 25 25 H 1.08998 * 109.47165 * 300.00500 * 1 2 3 26 26 H 1.09005 * 109.47132 * 59.99726 * 1 2 3 27 27 H 1.08997 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47599 * 239.99789 * 2 1 3 29 29 H 1.09003 * 109.47181 * 119.99500 * 2 1 3 30 30 H 1.08998 * 109.47384 * 59.99634 * 3 2 1 31 31 H 1.09003 * 109.47062 * 299.99716 * 3 2 1 32 32 H 1.08996 * 109.47048 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.46973 * 300.00142 * 6 4 3 34 34 H 1.09002 * 109.46567 * 60.00030 * 6 4 3 35 35 H 1.08999 * 109.46837 * 269.99848 * 10 9 7 36 36 H 1.09002 * 109.47066 * 29.99119 * 10 9 7 37 37 H 1.08997 * 109.47046 * 149.99799 * 10 9 7 38 38 H 1.09008 * 109.47414 * 332.43190 * 11 9 7 39 39 H 1.09006 * 109.47272 * 212.43163 * 11 9 7 40 40 H 1.08993 * 114.20071 * 27.25835 * 14 12 11 41 41 H 1.09000 * 114.37857 * 254.44464 * 14 12 11 42 42 H 1.09000 * 113.46792 * 219.14531 * 15 14 12 43 43 H 1.09007 * 113.52005 * 88.72287 * 15 14 12 44 44 H 0.97006 * 119.99979 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3084 7 6 4.0724 2.8579 -0.1232 8 8 3.2843 3.7762 -0.2036 9 7 5.3975 3.1032 -0.1437 10 6 6.3487 2.0058 0.0486 11 6 5.8866 4.4673 -0.3583 12 6 6.0938 5.1534 0.9935 13 1 5.2548 5.0074 1.6738 14 6 7.4572 4.8504 1.6303 15 6 7.3960 6.3294 2.0362 16 7 6.5174 6.5571 0.8790 17 6 6.2202 7.6130 0.0593 18 1 5.6009 7.4623 -0.8125 19 6 6.7148 8.8773 0.3492 20 7 6.7108 9.8135 -0.5759 21 14 7.3858 9.2499 2.0522 22 1 8.8179 8.8618 2.1158 23 1 7.2540 10.7028 2.3293 24 1 6.6193 8.4812 3.0654 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1694 0.8327 1.3086 33 1 3.7158 1.4227 2.1499 34 1 3.7160 -0.1907 1.3979 35 1 6.5697 1.8984 1.1105 36 1 5.9153 1.0791 -0.3277 37 1 7.2688 2.2232 -0.4939 38 1 5.1562 5.0277 -0.9420 39 1 6.8334 4.4333 -0.8973 40 1 8.2433 4.6161 0.9126 41 1 7.4176 4.1548 2.4686 42 1 8.3557 6.8406 1.9599 43 1 6.9042 6.4976 2.9944 44 1 7.0568 10.6969 -0.3735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231312689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:16 Heat of formation + Delta-G solvation = 18.118894 kcal Electronic energy + Delta-G solvation = -21379.575637 eV Core-core repulsion = 18334.064835 eV Total energy + Delta-G solvation = -3045.510802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15099 -38.43983 -36.05623 -35.32856 -32.34990 -32.06454 -28.77283 -28.35729 -26.92181 -26.35220 -24.07220 -23.20685 -22.40907 -20.80180 -19.43201 -18.75009 -16.97641 -16.77950 -16.08544 -15.58343 -15.47059 -14.89728 -14.48984 -14.20007 -13.77714 -13.60464 -13.23238 -13.04230 -12.91353 -12.58165 -12.43419 -12.28492 -12.13135 -11.80890 -11.76265 -11.63917 -11.33998 -11.07540 -11.04943 -10.85488 -10.67436 -10.64982 -10.22681 -10.11382 -9.93859 -9.47707 -9.25856 -8.85472 -8.32036 -7.13382 -5.84144 -3.15048 2.84110 3.17909 3.37963 3.48868 3.50141 4.46503 4.59795 4.60482 4.76394 4.80783 4.99228 5.01493 5.09746 5.14258 5.19274 5.33664 5.36933 5.40980 5.50431 5.56561 5.63404 5.68835 5.71681 5.74614 5.79563 5.85622 5.95309 5.96416 6.00149 6.13471 6.19122 6.26720 6.27809 6.35405 6.46620 6.52130 6.67857 7.07723 7.20612 7.60765 8.38939 8.43652 8.75028 9.70023 10.37781 11.32684 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004235 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.358282 B = 6609.302867 C = 6995.799533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.108 4.108 5 H 0.093 0.907 6 C -0.160 4.160 7 C 0.511 3.489 8 O -0.532 6.532 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.117 3.883 12 C 0.138 3.862 13 H 0.048 0.952 14 C -0.152 4.152 15 C 0.098 3.902 16 N -0.617 5.617 17 C -0.218 4.218 18 H 0.101 0.899 19 C 0.014 3.986 20 N -0.921 5.921 21 Si 0.883 3.117 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.273 1.273 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.040 0.960 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 -23.674 2.942 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.130 4.130 5 H 0.111 0.889 6 C -0.217 4.217 7 C 0.298 3.702 8 O -0.408 6.408 9 N -0.346 5.346 10 C -0.065 4.065 11 C -0.006 4.006 12 C 0.030 3.970 13 H 0.066 0.934 14 C -0.190 4.190 15 C -0.028 4.028 16 N -0.344 5.344 17 C -0.344 4.344 18 H 0.119 0.881 19 C -0.183 4.183 20 N -0.567 5.567 21 Si 0.714 3.286 22 H -0.215 1.215 23 H -0.228 1.228 24 H -0.198 1.198 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.719 -22.775 2.691 23.233 hybrid contribution 0.382 0.485 1.071 1.236 sum -3.337 -22.290 3.763 22.850 Atomic orbital electron populations 1.21764 0.95860 1.01311 1.02086 1.21590 0.95954 0.96788 1.01854 1.21435 0.92441 0.96407 1.03667 1.21293 0.97634 0.93823 1.00221 0.88887 1.22156 1.02470 1.01013 0.96069 1.20681 0.82051 0.91175 0.76291 1.90737 1.54794 1.46408 1.48837 1.47856 1.05645 1.09140 1.71909 1.21969 0.93437 0.89741 1.01374 1.21785 1.00108 0.80262 0.98492 1.22340 0.94594 0.85773 0.94290 0.93433 1.23578 0.98458 0.96918 1.00072 1.22526 0.95131 0.93420 0.91690 1.46330 1.47770 1.07976 1.32369 1.18671 1.28808 0.85082 1.01842 0.88124 1.24689 1.00208 0.95526 0.97864 1.69757 1.50581 1.04183 1.32152 0.86827 0.78667 0.76533 0.86574 1.21458 1.22761 1.19796 0.92676 0.92674 0.92946 0.92168 0.91830 0.91293 0.91120 0.90839 0.92138 0.91569 0.92325 0.91120 0.91142 0.89637 0.90292 0.89886 0.92126 0.92949 0.94267 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C -0.10 -1.10 4.03 -26.73 -0.11 -1.21 16 4 C -0.11 -1.14 1.93 -91.77 -0.18 -1.32 16 5 H 0.09 0.81 7.55 -51.93 -0.39 0.42 16 6 C -0.16 -1.34 8.51 37.16 0.32 -1.02 16 7 C 0.51 7.81 7.09 -10.98 -0.08 7.73 16 8 O -0.53 -10.78 15.50 5.56 0.09 -10.70 16 9 N -0.61 -8.67 2.87 -181.57 -0.52 -9.19 16 10 C 0.08 0.72 8.82 59.85 0.53 1.25 16 11 C 0.12 2.10 5.38 -4.05 -0.02 2.08 16 12 C 0.14 2.77 4.31 -72.39 -0.31 2.46 16 13 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.15 -2.57 8.02 -26.21 -0.21 -2.78 16 15 C 0.10 2.12 5.62 -8.50 -0.05 2.07 16 16 N -0.62 -15.42 3.49 -176.97 -0.62 -16.04 16 17 C -0.22 -6.41 10.97 -15.06 -0.17 -6.58 16 18 H 0.10 3.15 8.06 -52.49 -0.42 2.72 16 19 C 0.01 0.42 5.50 -17.43 -0.10 0.33 16 20 N -0.92 -29.40 13.97 55.49 0.78 -28.63 16 21 Si 0.88 23.34 25.11 -169.99 -4.27 19.08 16 22 H -0.29 -7.35 6.77 56.52 0.38 -6.97 16 23 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 24 H -0.27 -7.03 6.04 56.52 0.34 -6.69 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 32 H 0.07 0.54 4.33 -51.93 -0.22 0.31 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.06 0.49 7.15 -51.93 -0.37 0.12 16 36 H 0.07 0.49 5.74 -51.93 -0.30 0.19 16 37 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 38 H 0.09 1.85 7.41 -51.92 -0.38 1.46 16 39 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 40 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.17 6.17 -51.93 -0.32 0.85 16 43 H 0.04 0.86 7.17 -51.92 -0.37 0.49 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -34.84 338.33 -7.31 -42.14 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.70 Total: -2.78 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.16 Total: 1.02 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.36 Total: -53.86 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.27 Total: 19.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.84 -7.31 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.262 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds