Wall clock time and date at job start Mon Mar 30 2020 00:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.52995 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47259 * 54.99766 * 4 3 2 6 6 C 1.53005 * 109.47228 * 294.99799 * 4 3 2 7 7 C 1.50701 * 109.47303 * 174.99801 * 4 3 2 8 8 O 1.21275 * 119.99765 * 0.02562 * 7 4 3 9 9 N 1.34778 * 120.00073 * 179.97438 * 7 4 3 10 10 C 1.46500 * 120.00023 * 355.71854 * 9 7 4 11 11 C 1.46494 * 119.99855 * 175.71214 * 9 7 4 12 12 C 1.52999 * 109.47072 * 92.43610 * 11 9 7 13 13 H 1.08997 * 112.77808 * 313.84958 * 12 11 9 14 14 C 1.53501 * 113.46925 * 84.63830 * 12 11 9 15 15 C 1.53498 * 83.34346 * 140.84571 * 14 12 11 16 16 N 1.47069 * 87.98742 * 333.93180 * 15 14 12 17 17 C 1.36936 * 136.05668 * 206.86473 * 16 15 14 18 18 H 1.08000 * 120.00182 * 172.73237 * 17 16 15 19 19 C 1.38815 * 119.99919 * 352.72633 * 17 16 15 20 20 N 1.31613 * 120.00007 * 163.70119 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 343.69763 * 19 17 16 22 22 H 1.48505 * 109.46951 * 86.33931 * 21 19 17 23 23 H 1.48498 * 109.47335 * 206.33649 * 21 19 17 24 24 H 1.48496 * 109.47387 * 326.33865 * 21 19 17 25 25 H 1.08998 * 109.47165 * 300.00500 * 1 2 3 26 26 H 1.09005 * 109.47132 * 59.99726 * 1 2 3 27 27 H 1.08997 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47599 * 239.99789 * 2 1 3 29 29 H 1.09003 * 109.47181 * 119.99500 * 2 1 3 30 30 H 1.08998 * 109.47384 * 59.99634 * 3 2 1 31 31 H 1.09003 * 109.47062 * 299.99716 * 3 2 1 32 32 H 1.08996 * 109.47048 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.46973 * 300.00142 * 6 4 3 34 34 H 1.09002 * 109.46567 * 60.00030 * 6 4 3 35 35 H 1.08999 * 109.46837 * 269.99848 * 10 9 7 36 36 H 1.09002 * 109.47066 * 29.99119 * 10 9 7 37 37 H 1.08997 * 109.47046 * 149.99799 * 10 9 7 38 38 H 1.09008 * 109.47414 * 332.43190 * 11 9 7 39 39 H 1.09006 * 109.47272 * 212.43163 * 11 9 7 40 40 H 1.08993 * 114.20071 * 27.25835 * 14 12 11 41 41 H 1.09000 * 114.37857 * 254.44464 * 14 12 11 42 42 H 1.09000 * 113.46792 * 219.14531 * 15 14 12 43 43 H 1.09007 * 113.52005 * 88.72287 * 15 14 12 44 44 H 0.97006 * 119.99979 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3084 7 6 4.0724 2.8579 -0.1232 8 8 3.2843 3.7762 -0.2036 9 7 5.3975 3.1032 -0.1437 10 6 6.3487 2.0058 0.0486 11 6 5.8866 4.4673 -0.3583 12 6 6.0938 5.1534 0.9935 13 1 5.2548 5.0074 1.6738 14 6 7.4572 4.8504 1.6303 15 6 7.3960 6.3294 2.0362 16 7 6.5174 6.5571 0.8790 17 6 6.2202 7.6130 0.0593 18 1 5.6009 7.4623 -0.8125 19 6 6.7148 8.8773 0.3492 20 7 6.7108 9.8135 -0.5759 21 14 7.3858 9.2499 2.0522 22 1 8.8179 8.8618 2.1158 23 1 7.2540 10.7028 2.3293 24 1 6.6193 8.4812 3.0654 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1694 0.8327 1.3086 33 1 3.7158 1.4227 2.1499 34 1 3.7160 -0.1907 1.3979 35 1 6.5697 1.8984 1.1105 36 1 5.9153 1.0791 -0.3277 37 1 7.2688 2.2232 -0.4939 38 1 5.1562 5.0277 -0.9420 39 1 6.8334 4.4333 -0.8973 40 1 8.2433 4.6161 0.9126 41 1 7.4176 4.1548 2.4686 42 1 8.3557 6.8406 1.9599 43 1 6.9042 6.4976 2.9944 44 1 7.0568 10.6969 -0.3735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231312689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:15 Heat of formation + Delta-G solvation = -6.002632 kcal Electronic energy + Delta-G solvation = -21380.621625 eV Core-core repulsion = 18334.064835 eV Total energy + Delta-G solvation = -3046.556790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37074 -40.04754 -36.94219 -36.58319 -34.44939 -33.00537 -30.52745 -29.87288 -27.84301 -27.17772 -25.45022 -24.95361 -23.58705 -21.67270 -21.14676 -19.92464 -18.86453 -17.97951 -17.45831 -17.22044 -16.51326 -16.21897 -15.84259 -15.44585 -14.98662 -14.81150 -14.69462 -14.39794 -14.07767 -13.75816 -13.67285 -13.45995 -13.35503 -13.08901 -13.05117 -12.76891 -12.65019 -12.27491 -12.08427 -12.06073 -11.94918 -11.83953 -11.81074 -11.60482 -11.38997 -11.15425 -11.00867 -10.59853 -9.62581 -9.19353 -8.15995 -5.43239 1.25615 1.33865 1.41595 1.67282 2.03086 2.39297 3.04580 3.11970 3.52595 3.65256 3.82475 3.98862 4.12549 4.21979 4.31132 4.35493 4.38735 4.40718 4.46139 4.57194 4.62918 4.68138 4.78658 4.81657 4.88750 4.90250 4.92388 4.94630 4.97050 5.03901 5.10419 5.14241 5.20975 5.28638 5.32397 5.43955 5.47732 5.53169 5.64599 6.13555 6.48049 6.51592 7.24737 7.41543 8.26132 9.05121 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004235 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.358282 B = 6609.302867 C = 6995.799533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.097 4.097 5 H 0.123 0.877 6 C -0.155 4.155 7 C 0.499 3.501 8 O -0.598 6.598 9 N -0.607 5.607 10 C 0.066 3.934 11 C 0.128 3.872 12 C 0.133 3.867 13 H 0.031 0.969 14 C -0.111 4.111 15 C 0.084 3.916 16 N -0.648 5.648 17 C -0.209 4.209 18 H 0.058 0.942 19 C -0.051 4.051 20 N -0.970 5.970 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.306 1.306 24 H -0.263 1.263 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -27.867 4.953 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.140 4.140 4 C -0.118 4.118 5 H 0.141 0.859 6 C -0.212 4.212 7 C 0.289 3.711 8 O -0.479 6.479 9 N -0.339 5.339 10 C -0.075 4.075 11 C 0.004 3.996 12 C 0.026 3.974 13 H 0.048 0.952 14 C -0.148 4.148 15 C -0.040 4.040 16 N -0.376 5.376 17 C -0.336 4.336 18 H 0.076 0.924 19 C -0.244 4.244 20 N -0.619 5.619 21 Si 0.780 3.220 22 H -0.194 1.194 23 H -0.234 1.234 24 H -0.188 1.188 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.620 -27.066 4.733 27.525 hybrid contribution -0.339 1.717 0.377 1.790 sum -1.959 -25.349 5.109 25.933 Atomic orbital electron populations 1.21797 0.96075 1.02164 1.01320 1.21556 0.95779 0.94556 1.03412 1.21416 0.93152 0.98110 1.01283 1.21344 0.96988 0.90633 1.02876 0.85918 1.22180 1.03628 1.01847 0.93539 1.21731 0.81892 0.92706 0.74801 1.90712 1.56561 1.48807 1.51812 1.47935 1.06340 1.08648 1.70976 1.22402 0.92977 0.88904 1.03223 1.21395 0.99124 0.82208 0.96891 1.22532 0.96328 0.83349 0.95192 0.95180 1.23411 0.95859 0.94439 1.01139 1.22801 0.93995 0.96820 0.90383 1.46532 1.49157 1.08678 1.33198 1.18505 1.26913 0.86780 1.01445 0.92391 1.25447 1.01826 0.95393 1.01702 1.69912 1.53035 1.04689 1.34305 0.85731 0.78991 0.75789 0.81477 1.19373 1.23414 1.18812 0.93418 0.93628 0.91196 0.90628 0.90008 0.93609 0.93847 0.88943 0.93956 0.88772 0.90228 0.88055 0.89798 0.94899 0.88893 0.87761 0.87499 0.93337 0.93991 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.59 5.69 30.59 0.17 -1.41 16 3 C -0.10 -2.17 4.03 30.59 0.12 -2.05 16 4 C -0.10 -1.84 1.93 -11.54 -0.02 -1.86 16 5 H 0.12 1.63 7.55 -2.39 -0.02 1.61 16 6 C -0.16 -1.98 8.51 71.98 0.61 -1.37 16 7 C 0.50 15.24 7.09 87.66 0.62 15.87 16 8 O -0.60 -25.98 15.50 -3.02 -0.05 -26.02 16 9 N -0.61 -16.28 2.87 -846.76 -2.43 -18.71 16 10 C 0.07 0.91 8.82 127.77 1.13 2.03 16 11 C 0.13 4.67 5.38 86.38 0.46 5.14 16 12 C 0.13 5.25 4.31 41.79 0.18 5.43 16 13 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 14 C -0.11 -3.27 8.02 30.93 0.25 -3.02 16 15 C 0.08 3.45 5.62 83.18 0.47 3.91 16 16 N -0.65 -32.57 3.49 -713.81 -2.49 -35.06 16 17 C -0.21 -12.83 10.97 84.03 0.92 -11.91 16 18 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 19 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 20 N -0.97 -64.62 13.97 21.65 0.30 -64.32 16 21 Si 0.95 48.94 25.11 68.60 1.72 50.66 16 22 H -0.27 -12.80 6.77 99.48 0.67 -12.13 16 23 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 24 H -0.26 -12.95 6.04 99.48 0.60 -12.34 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.85 6.56 -2.39 -0.02 0.84 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 32 H 0.09 0.83 4.33 -2.39 -0.01 0.82 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.73 6.56 -2.39 -0.02 0.72 16 35 H 0.08 0.84 7.15 -2.39 -0.02 0.82 16 36 H 0.10 0.83 5.74 -2.39 -0.01 0.81 16 37 H 0.08 1.00 7.91 -2.39 -0.02 0.98 16 38 H 0.03 1.53 7.41 -2.38 -0.02 1.51 16 39 H 0.09 3.07 7.70 -2.38 -0.02 3.05 16 40 H 0.10 2.71 7.96 -2.39 -0.02 2.69 16 41 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 2.02 6.17 -2.39 -0.01 2.01 16 43 H 0.04 1.71 7.17 -2.38 -0.02 1.70 16 44 H 0.26 16.47 8.31 -92.70 -0.77 15.70 16 Total: -1.00 -83.87 338.33 3.97 -79.90 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.82 Total: 7.08 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.10 Total: 6.47 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.62 Total: -118.09 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.72 Total: 50.66 kcal Total: -83.87 3.97 -79.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.901 kcal (2) G-P(sol) polarization free energy of solvation -83.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds