Wall clock time and date at job start Mon Mar 30 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46853 * 2 1 4 4 C 1.52998 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47220 * 55.00104 * 4 3 2 6 6 C 1.52996 * 109.47304 * 294.99999 * 4 3 2 7 7 C 1.50702 * 109.47079 * 174.99955 * 4 3 2 8 8 O 1.21277 * 119.99795 * 5.44077 * 7 4 3 9 9 N 1.34774 * 120.00159 * 185.44189 * 7 4 3 10 10 C 1.46506 * 119.99775 * 4.80082 * 9 7 4 11 11 C 1.46496 * 119.99983 * 184.80711 * 9 7 4 12 12 C 1.52998 * 109.46937 * 273.88629 * 11 9 7 13 13 H 1.09000 * 112.96651 * 66.61176 * 12 11 9 14 14 C 1.53952 * 113.77205 * 294.93009 * 12 11 9 15 15 C 1.53941 * 86.29328 * 222.09184 * 14 12 11 16 16 N 1.47582 * 113.77052 * 198.28860 * 12 11 9 17 17 C 1.36935 * 134.49189 * 318.93435 * 16 12 11 18 18 H 1.07998 * 119.99944 * 8.17477 * 17 16 12 19 19 C 1.38816 * 119.99995 * 188.17774 * 17 16 12 20 20 N 1.31615 * 120.00259 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47406 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47567 * 119.99630 * 21 19 17 24 24 H 1.48501 * 109.47303 * 239.99720 * 21 19 17 25 25 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47094 * 299.99673 * 1 2 3 27 27 H 1.08994 * 109.47432 * 59.99871 * 1 2 3 28 28 H 1.08997 * 109.47106 * 240.00157 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99777 * 2 1 3 30 30 H 1.08997 * 109.47137 * 60.00176 * 3 2 1 31 31 H 1.09000 * 109.47056 * 299.99841 * 3 2 1 32 32 H 1.09003 * 109.47083 * 312.01728 * 6 4 3 33 33 H 1.09004 * 109.47479 * 72.01991 * 6 4 3 34 34 H 1.09004 * 109.47310 * 192.01773 * 6 4 3 35 35 H 1.09003 * 109.46760 * 95.43965 * 10 9 7 36 36 H 1.08991 * 109.47120 * 335.43493 * 10 9 7 37 37 H 1.09007 * 109.46789 * 215.43299 * 10 9 7 38 38 H 1.08998 * 109.47276 * 33.88813 * 11 9 7 39 39 H 1.09005 * 109.47395 * 153.89003 * 11 9 7 40 40 H 1.09008 * 113.73561 * 336.44122 * 14 12 11 41 41 H 1.08995 * 113.74174 * 107.63308 * 14 12 11 42 42 H 1.09000 * 113.77246 * 137.90343 * 15 14 12 43 43 H 1.08998 * 113.77041 * 269.19183 * 15 14 12 44 44 H 0.97001 * 120.00681 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0805 0.8328 1.3063 7 6 4.0722 2.8580 -0.1245 8 8 3.2885 3.7834 -0.1050 9 7 5.3922 3.0955 -0.2569 10 6 6.3285 1.9761 -0.3862 11 6 5.8908 4.4729 -0.2714 12 6 5.8224 5.0251 -1.6966 13 1 4.8010 5.1423 -2.0588 14 6 6.7529 4.3023 -2.6875 15 6 7.0870 5.7002 -3.2388 16 7 6.6711 6.2123 -1.9160 17 6 6.9576 7.3352 -1.1865 18 1 6.6173 7.4168 -0.1648 19 6 7.6856 8.3686 -1.7602 20 7 8.1008 8.2690 -3.0052 21 14 8.0759 9.9006 -0.7653 22 1 7.5010 9.7658 0.5973 23 1 9.5485 10.0650 -0.6665 24 1 7.4891 11.0889 -1.4354 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.5534 1.2829 2.1476 33 1 3.9026 -0.2426 1.2995 34 1 5.1493 1.0235 1.4032 35 1 6.5279 1.7893 -1.4414 36 1 5.8933 1.0845 0.0648 37 1 7.2611 2.2220 0.1217 38 1 5.2773 5.0884 0.3865 39 1 6.9241 4.4891 0.0752 40 1 7.5982 3.8044 -2.2122 41 1 6.2273 3.6630 -3.3967 42 1 8.1454 5.8461 -3.4546 43 1 6.4388 6.0166 -4.0560 44 1 8.6092 8.9912 -3.4062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231312690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:18 Heat of formation + Delta-G solvation = 6.579937 kcal Electronic energy + Delta-G solvation = -21286.128340 eV Core-core repulsion = 18240.117172 eV Total energy + Delta-G solvation = -3046.011169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07723 -37.86691 -36.00666 -35.17634 -32.34336 -31.94945 -28.51149 -27.79023 -26.83710 -26.33585 -23.90688 -23.27182 -22.18075 -20.72609 -19.16158 -18.65285 -16.98363 -16.36218 -16.08197 -15.65953 -15.17911 -14.82819 -14.21593 -14.02332 -13.85559 -13.61950 -13.42198 -12.83058 -12.57353 -12.49161 -12.36218 -12.24187 -12.07732 -11.67901 -11.35263 -11.32862 -11.06884 -11.02458 -10.91771 -10.77001 -10.70141 -10.66190 -10.38421 -9.84734 -9.69686 -9.50576 -9.32043 -8.74509 -8.26327 -6.79217 -5.72197 -3.03365 2.86996 3.22587 3.42265 3.48346 3.50453 4.46815 4.54332 4.60398 4.77117 4.98469 5.05648 5.10738 5.15813 5.28183 5.32780 5.45477 5.49269 5.52958 5.59996 5.64000 5.64574 5.71750 5.76192 5.78900 5.90414 5.96570 6.00405 6.04398 6.18426 6.23783 6.27750 6.32912 6.48126 6.71337 6.77468 6.91784 7.30810 7.48050 7.63169 7.67872 8.03925 8.44709 9.10712 9.76925 10.68674 11.46116 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031979 B = 0.003894 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.352793 B = 7188.994668 C = 7348.827533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.110 4.110 5 H 0.093 0.907 6 C -0.152 4.152 7 C 0.512 3.488 8 O -0.537 6.537 9 N -0.607 5.607 10 C 0.066 3.934 11 C 0.120 3.880 12 C 0.130 3.870 13 H 0.047 0.953 14 C -0.158 4.158 15 C 0.167 3.833 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 -20.077 5.876 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.132 4.132 5 H 0.111 0.889 6 C -0.209 4.209 7 C 0.299 3.701 8 O -0.414 6.414 9 N -0.340 5.340 10 C -0.077 4.077 11 C -0.004 4.004 12 C 0.022 3.978 13 H 0.064 0.936 14 C -0.197 4.197 15 C 0.041 3.959 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.739 3.261 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.501 -19.240 5.948 21.490 hybrid contribution 0.270 1.028 0.301 1.105 sum -7.231 -18.212 6.248 20.567 Atomic orbital electron populations 1.21764 0.95885 1.01316 1.02043 1.21579 0.95928 0.96796 1.01884 1.21448 0.92416 0.96395 1.03601 1.21322 0.97657 0.93984 1.00189 0.88878 1.22017 1.01821 1.00966 0.96095 1.20626 0.81995 0.91194 0.76269 1.90705 1.54779 1.46045 1.49836 1.47812 1.06371 1.07585 1.72271 1.22114 0.93831 0.89641 1.02110 1.21749 0.99371 0.80169 0.99076 1.22507 0.94656 0.87952 0.92675 0.93597 1.23760 0.99067 0.98024 0.98823 1.22097 0.99398 0.86236 0.88131 1.46137 1.49651 1.20092 1.17056 1.19072 1.28936 0.92723 0.94085 0.90319 1.24820 1.01494 0.97982 0.96148 1.69842 1.41715 1.32826 1.12409 0.86100 0.77603 0.83342 0.79077 1.20431 1.21804 1.21769 0.92946 0.92730 0.92660 0.92104 0.91900 0.91265 0.91211 0.92003 0.91518 0.91233 0.92421 0.90182 0.91230 0.90944 0.90104 0.91072 0.93463 0.91898 0.95450 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.00 5.70 -26.73 -0.15 -1.15 16 3 C -0.10 -1.08 3.97 -26.73 -0.11 -1.19 16 4 C -0.11 -1.17 1.89 -91.77 -0.17 -1.34 16 5 H 0.09 0.85 7.75 -51.92 -0.40 0.44 16 6 C -0.15 -1.27 8.09 37.16 0.30 -0.97 16 7 C 0.51 7.88 6.95 -10.99 -0.08 7.80 16 8 O -0.54 -10.69 15.68 5.56 0.09 -10.60 16 9 N -0.61 -8.99 2.77 -181.57 -0.50 -9.49 16 10 C 0.07 0.69 9.25 59.85 0.55 1.24 16 11 C 0.12 2.24 5.29 -4.05 -0.02 2.22 16 12 C 0.13 2.83 4.55 -66.86 -0.30 2.52 16 13 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.16 -3.06 7.01 -25.79 -0.18 -3.24 16 15 C 0.17 4.07 7.34 -2.85 -0.02 4.05 16 16 N -0.60 -15.91 3.58 -169.72 -0.61 -16.52 16 17 C -0.22 -6.33 10.51 -15.06 -0.16 -6.49 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.99 11.64 55.49 0.65 -27.35 16 21 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 6.85 -51.93 -0.36 0.09 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 32 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.07 0.42 7.19 -51.93 -0.37 0.05 16 34 H 0.07 0.56 5.43 -51.93 -0.28 0.27 16 35 H 0.06 0.59 7.80 -51.93 -0.41 0.18 16 36 H 0.08 0.62 4.14 -51.93 -0.22 0.41 16 37 H 0.07 0.68 7.95 -51.92 -0.41 0.27 16 38 H 0.07 1.51 7.62 -51.93 -0.40 1.11 16 39 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 40 H 0.07 1.27 8.01 -51.92 -0.42 0.86 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.65 7.57 -51.93 -0.39 1.25 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -33.63 346.06 -8.08 -41.71 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.82 Total: -2.93 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.07 Total: 2.31 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.46 Total: -53.36 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.63 -8.08 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.289 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds