Wall clock time and date at job start Mon Mar 30 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46853 * 2 1 4 4 C 1.52998 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47220 * 55.00104 * 4 3 2 6 6 C 1.52996 * 109.47304 * 294.99999 * 4 3 2 7 7 C 1.50702 * 109.47079 * 174.99955 * 4 3 2 8 8 O 1.21277 * 119.99795 * 5.44077 * 7 4 3 9 9 N 1.34774 * 120.00159 * 185.44189 * 7 4 3 10 10 C 1.46506 * 119.99775 * 4.80082 * 9 7 4 11 11 C 1.46496 * 119.99983 * 184.80711 * 9 7 4 12 12 C 1.52998 * 109.46937 * 273.88629 * 11 9 7 13 13 H 1.09000 * 112.96651 * 66.61176 * 12 11 9 14 14 C 1.53952 * 113.77205 * 294.93009 * 12 11 9 15 15 C 1.53941 * 86.29328 * 222.09184 * 14 12 11 16 16 N 1.47582 * 113.77052 * 198.28860 * 12 11 9 17 17 C 1.36935 * 134.49189 * 318.93435 * 16 12 11 18 18 H 1.07998 * 119.99944 * 8.17477 * 17 16 12 19 19 C 1.38816 * 119.99995 * 188.17774 * 17 16 12 20 20 N 1.31615 * 120.00259 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47406 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47567 * 119.99630 * 21 19 17 24 24 H 1.48501 * 109.47303 * 239.99720 * 21 19 17 25 25 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47094 * 299.99673 * 1 2 3 27 27 H 1.08994 * 109.47432 * 59.99871 * 1 2 3 28 28 H 1.08997 * 109.47106 * 240.00157 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99777 * 2 1 3 30 30 H 1.08997 * 109.47137 * 60.00176 * 3 2 1 31 31 H 1.09000 * 109.47056 * 299.99841 * 3 2 1 32 32 H 1.09003 * 109.47083 * 312.01728 * 6 4 3 33 33 H 1.09004 * 109.47479 * 72.01991 * 6 4 3 34 34 H 1.09004 * 109.47310 * 192.01773 * 6 4 3 35 35 H 1.09003 * 109.46760 * 95.43965 * 10 9 7 36 36 H 1.08991 * 109.47120 * 335.43493 * 10 9 7 37 37 H 1.09007 * 109.46789 * 215.43299 * 10 9 7 38 38 H 1.08998 * 109.47276 * 33.88813 * 11 9 7 39 39 H 1.09005 * 109.47395 * 153.89003 * 11 9 7 40 40 H 1.09008 * 113.73561 * 336.44122 * 14 12 11 41 41 H 1.08995 * 113.74174 * 107.63308 * 14 12 11 42 42 H 1.09000 * 113.77246 * 137.90343 * 15 14 12 43 43 H 1.08998 * 113.77041 * 269.19183 * 15 14 12 44 44 H 0.97001 * 120.00681 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0805 0.8328 1.3063 7 6 4.0722 2.8580 -0.1245 8 8 3.2885 3.7834 -0.1050 9 7 5.3922 3.0955 -0.2569 10 6 6.3285 1.9761 -0.3862 11 6 5.8908 4.4729 -0.2714 12 6 5.8224 5.0251 -1.6966 13 1 4.8010 5.1423 -2.0588 14 6 6.7529 4.3023 -2.6875 15 6 7.0870 5.7002 -3.2388 16 7 6.6711 6.2123 -1.9160 17 6 6.9576 7.3352 -1.1865 18 1 6.6173 7.4168 -0.1648 19 6 7.6856 8.3686 -1.7602 20 7 8.1008 8.2690 -3.0052 21 14 8.0759 9.9006 -0.7653 22 1 7.5010 9.7658 0.5973 23 1 9.5485 10.0650 -0.6665 24 1 7.4891 11.0889 -1.4354 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.5534 1.2829 2.1476 33 1 3.9026 -0.2426 1.2995 34 1 5.1493 1.0235 1.4032 35 1 6.5279 1.7893 -1.4414 36 1 5.8933 1.0845 0.0648 37 1 7.2611 2.2220 0.1217 38 1 5.2773 5.0884 0.3865 39 1 6.9241 4.4891 0.0752 40 1 7.5982 3.8044 -2.2122 41 1 6.2273 3.6630 -3.3967 42 1 8.1454 5.8461 -3.4546 43 1 6.4388 6.0166 -4.0560 44 1 8.6092 8.9912 -3.4062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231312690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:18 Heat of formation + Delta-G solvation = -14.311067 kcal Electronic energy + Delta-G solvation = -21287.034242 eV Core-core repulsion = 18240.117172 eV Total energy + Delta-G solvation = -3046.917071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30182 -39.60830 -36.90745 -36.48269 -34.27254 -32.96305 -29.88230 -29.85565 -27.69527 -27.26963 -25.37062 -25.04532 -23.45788 -21.63848 -20.94083 -19.86341 -18.71295 -17.73224 -17.41346 -16.85623 -16.67419 -16.24745 -15.82889 -15.28520 -15.07365 -14.82548 -14.37655 -14.13674 -13.89119 -13.75113 -13.47936 -13.35256 -13.20621 -13.01928 -12.97042 -12.64385 -12.49844 -12.28295 -12.23371 -12.05896 -11.86030 -11.80995 -11.65920 -11.56200 -11.38178 -11.29851 -10.88785 -10.58472 -9.61662 -8.90677 -7.93809 -5.26706 1.42121 1.44084 1.54145 1.68977 2.02934 2.47473 3.27174 3.41406 3.57331 3.82238 3.86682 4.00473 4.16657 4.29126 4.32517 4.38732 4.40459 4.43935 4.52675 4.66449 4.67898 4.78101 4.84490 4.89246 4.93965 4.96128 4.97527 5.02976 5.05685 5.07971 5.15715 5.20120 5.30531 5.33625 5.46857 5.49865 5.53316 5.56934 5.70206 5.92166 6.51498 6.90614 7.25446 7.58559 8.56275 9.24529 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031979 B = 0.003894 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.352793 B = 7188.994668 C = 7348.827533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.100 4.100 4 C -0.100 4.100 5 H 0.121 0.879 6 C -0.148 4.148 7 C 0.502 3.498 8 O -0.594 6.594 9 N -0.604 5.604 10 C 0.057 3.943 11 C 0.136 3.864 12 C 0.129 3.871 13 H 0.018 0.982 14 C -0.119 4.119 15 C 0.158 3.842 16 N -0.629 5.629 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.066 4.066 20 N -0.953 5.953 21 Si 0.976 3.024 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.294 1.294 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.008 0.992 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 -23.181 6.912 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.138 4.138 4 C -0.121 4.121 5 H 0.139 0.861 6 C -0.205 4.205 7 C 0.292 3.708 8 O -0.475 6.475 9 N -0.336 5.336 10 C -0.084 4.084 11 C 0.011 3.989 12 C 0.022 3.978 13 H 0.036 0.964 14 C -0.157 4.157 15 C 0.033 3.967 16 N -0.356 5.356 17 C -0.361 4.361 18 H 0.096 0.904 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.804 3.196 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.221 1.221 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.898 -22.409 6.999 24.469 hybrid contribution 0.019 1.981 -0.041 1.982 sum -6.880 -20.428 6.958 22.650 Atomic orbital electron populations 1.21794 0.96025 1.02126 1.01372 1.21545 0.95815 0.94668 1.03348 1.21424 0.92822 0.98067 1.01469 1.21381 0.97242 0.90775 1.02699 0.86110 1.22036 1.01942 1.02574 0.93940 1.21645 0.81602 0.92793 0.74759 1.90683 1.56280 1.48241 1.52291 1.47886 1.07142 1.06932 1.71668 1.22469 0.93533 0.88971 1.03419 1.21280 0.99117 0.82349 0.96156 1.22574 0.93146 0.86811 0.95308 0.96395 1.23497 0.98934 0.95577 0.97690 1.22088 0.97579 0.89777 0.87281 1.46552 1.50688 1.20659 1.17713 1.19409 1.28386 0.93776 0.94517 0.90378 1.25658 1.01901 1.00992 0.97349 1.70015 1.42681 1.33521 1.13998 0.85044 0.77345 0.79111 0.78051 1.19154 1.21282 1.22144 0.91329 0.93300 0.93582 0.90739 0.90127 0.93221 0.93763 0.93179 0.88302 0.90427 0.91315 0.86905 0.90234 0.94027 0.89455 0.88592 0.90377 0.94116 0.97429 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -1.55 5.70 30.60 0.17 -1.37 16 3 C -0.10 -2.05 3.97 30.60 0.12 -1.93 16 4 C -0.10 -1.87 1.89 -11.54 -0.02 -1.89 16 5 H 0.12 1.65 7.75 -2.38 -0.02 1.63 16 6 C -0.15 -1.91 8.09 71.98 0.58 -1.33 16 7 C 0.50 15.09 6.95 87.66 0.61 15.70 16 8 O -0.59 -24.58 15.68 -3.02 -0.05 -24.63 16 9 N -0.60 -16.87 2.77 -846.76 -2.35 -19.22 16 10 C 0.06 0.96 9.25 127.77 1.18 2.14 16 11 C 0.14 5.08 5.29 86.38 0.46 5.53 16 12 C 0.13 5.64 4.55 45.09 0.21 5.85 16 13 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 14 C -0.12 -4.40 7.01 31.25 0.22 -4.18 16 15 C 0.16 7.86 7.34 86.43 0.63 8.49 16 16 N -0.63 -33.94 3.58 -690.86 -2.47 -36.41 16 17 C -0.23 -13.64 10.51 84.03 0.88 -12.75 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 20 N -0.95 -59.43 11.64 21.65 0.25 -59.18 16 21 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.82 6.85 -2.39 -0.02 0.80 16 30 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.04 1.12 8.04 -2.39 -0.02 1.10 16 32 H 0.05 0.79 8.06 -2.39 -0.02 0.77 16 33 H 0.10 0.71 7.19 -2.38 -0.02 0.69 16 34 H 0.08 0.90 5.43 -2.39 -0.01 0.88 16 35 H 0.07 1.06 7.80 -2.39 -0.02 1.04 16 36 H 0.11 1.17 4.14 -2.39 -0.01 1.16 16 37 H 0.08 1.23 7.95 -2.38 -0.02 1.21 16 38 H 0.04 1.80 7.62 -2.39 -0.02 1.78 16 39 H 0.09 3.14 7.90 -2.38 -0.02 3.12 16 40 H 0.10 3.12 8.01 -2.38 -0.02 3.10 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 2.18 7.57 -2.39 -0.02 2.16 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -77.45 346.06 4.59 -72.87 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.95 Total: 7.76 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.23 Total: 9.36 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -4.57 Total: -114.81 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.45 4.59 -72.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.557 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds