Wall clock time and date at job start Mon Mar 30 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47497 * 2 1 4 4 C 1.52998 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47303 * 304.99400 * 4 3 2 6 6 C 1.53002 * 109.47478 * 65.00099 * 4 3 2 7 7 C 1.50708 * 109.46974 * 184.99960 * 4 3 2 8 8 O 1.21288 * 119.99811 * 345.86874 * 7 4 3 9 9 N 1.34771 * 120.00252 * 165.87549 * 7 4 3 10 10 C 1.46499 * 120.00014 * 5.74270 * 9 7 4 11 11 C 1.46502 * 120.00084 * 185.75005 * 9 7 4 12 12 C 1.52999 * 109.47005 * 264.47346 * 11 9 7 13 13 H 1.08995 * 112.73750 * 314.29443 * 12 11 9 14 14 C 1.53614 * 113.55452 * 85.04536 * 12 11 9 15 15 C 1.53495 * 83.30473 * 140.82589 * 14 12 11 16 16 N 1.47065 * 113.46493 * 183.54592 * 12 11 9 17 17 C 1.36938 * 136.05743 * 38.00930 * 16 12 11 18 18 H 1.07998 * 120.00143 * 353.70434 * 17 16 12 19 19 C 1.38814 * 119.99586 * 173.69808 * 17 16 12 20 20 N 1.31618 * 120.00380 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47141 * 90.00035 * 21 19 17 23 23 H 1.48498 * 109.46971 * 210.00098 * 21 19 17 24 24 H 1.48496 * 109.46948 * 330.00303 * 21 19 17 25 25 H 1.09005 * 109.47002 * 60.00338 * 1 2 3 26 26 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47084 * 300.00650 * 1 2 3 28 28 H 1.09007 * 109.47520 * 239.99594 * 2 1 3 29 29 H 1.09005 * 109.47002 * 119.99662 * 2 1 3 30 30 H 1.08994 * 109.47234 * 59.99688 * 3 2 1 31 31 H 1.09005 * 109.46719 * 299.99835 * 3 2 1 32 32 H 1.08995 * 109.47234 * 173.83873 * 6 4 3 33 33 H 1.08999 * 109.46556 * 293.84563 * 6 4 3 34 34 H 1.09002 * 109.46719 * 53.84255 * 6 4 3 35 35 H 1.08994 * 109.47588 * 206.63800 * 10 9 7 36 36 H 1.09007 * 109.47289 * 326.63764 * 10 9 7 37 37 H 1.08999 * 109.47024 * 86.63321 * 10 9 7 38 38 H 1.09002 * 109.47224 * 144.47343 * 11 9 7 39 39 H 1.09002 * 109.46886 * 24.47870 * 11 9 7 40 40 H 1.08994 * 114.20851 * 27.25080 * 14 12 11 41 41 H 1.09010 * 114.23555 * 254.39569 * 14 12 11 42 42 H 1.08997 * 113.47005 * 219.16855 * 15 14 12 43 43 H 1.09002 * 113.47108 * 88.78552 * 15 14 12 44 44 H 0.96998 * 120.00197 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8325 -1.3064 7 6 4.0724 2.8578 0.1245 8 8 3.3143 3.7880 -0.0520 9 7 5.3640 3.0901 0.4312 10 6 6.3079 1.9733 0.5205 11 6 5.8241 4.4594 0.6755 12 6 6.4179 5.0351 -0.6117 13 1 7.0918 4.3401 -1.1124 14 6 5.3689 5.6512 -1.5497 15 6 6.4563 6.7104 -1.7770 16 7 6.9840 6.3820 -0.4441 17 6 7.6909 7.0408 0.5263 18 1 7.8640 6.5692 1.4823 19 6 8.1850 8.3146 0.2810 20 7 7.9738 8.8894 -0.8840 21 14 9.1499 9.2129 1.6045 22 1 10.5940 8.8957 1.4657 23 1 8.9482 10.6767 1.4565 24 1 8.6746 8.7805 2.9432 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 5.1650 0.9316 -1.3543 33 1 3.8099 -0.2226 -1.3450 34 1 3.6304 1.3543 -2.1509 35 1 7.1190 2.2364 1.1995 36 1 5.7914 1.0901 0.8966 37 1 6.7157 1.7623 -0.4681 38 1 6.5853 4.4532 1.4557 39 1 4.9823 5.0741 0.9942 40 1 4.4799 6.0251 -1.0418 41 1 5.1437 5.0462 -2.4280 42 1 6.0652 7.7251 -1.8510 43 1 7.1409 6.4626 -2.5881 44 1 8.3188 9.7796 -1.0553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231312691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:21 Heat of formation + Delta-G solvation = 5.822884 kcal Electronic energy + Delta-G solvation = -21333.645973 eV Core-core repulsion = 18287.601976 eV Total energy + Delta-G solvation = -3046.043997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03376 -37.97409 -36.00715 -35.18128 -32.30290 -31.97689 -28.42911 -27.81972 -26.78738 -26.38583 -23.87607 -23.29801 -22.05955 -20.71985 -19.10725 -18.67778 -17.04768 -16.48326 -15.93276 -15.58455 -15.27663 -14.65227 -14.18619 -13.95514 -13.77861 -13.74350 -13.33931 -12.83161 -12.62300 -12.43894 -12.32900 -12.07317 -12.05769 -11.87035 -11.41438 -11.33653 -11.08813 -11.02222 -10.92074 -10.74472 -10.69859 -10.65064 -10.36288 -9.80466 -9.73417 -9.47482 -9.25687 -8.74383 -8.20012 -6.80690 -5.72468 -3.04271 2.88954 3.24391 3.41086 3.45627 3.48072 4.46935 4.53910 4.62200 4.77967 5.00213 5.02309 5.10270 5.18899 5.33005 5.36592 5.46047 5.51697 5.54462 5.62130 5.63915 5.67408 5.72238 5.76724 5.80890 5.96469 5.97334 6.01503 6.08781 6.15074 6.20087 6.27988 6.47525 6.61055 6.75876 6.85009 6.90284 7.32223 7.53908 7.64183 7.68355 8.03050 8.46687 9.07991 9.75096 10.72093 11.45818 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.003856 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.497235 B = 7259.963994 C = 7391.402284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.110 4.110 5 H 0.090 0.910 6 C -0.146 4.146 7 C 0.513 3.487 8 O -0.532 6.532 9 N -0.612 5.612 10 C 0.079 3.921 11 C 0.115 3.885 12 C 0.131 3.869 13 H 0.038 0.962 14 C -0.155 4.155 15 C 0.156 3.844 16 N -0.601 5.601 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 -19.888 1.131 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.131 4.131 5 H 0.108 0.892 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.408 6.408 9 N -0.345 5.345 10 C -0.065 4.065 11 C -0.008 4.008 12 C 0.023 3.977 13 H 0.056 0.944 14 C -0.194 4.194 15 C 0.031 3.969 16 N -0.327 5.327 17 C -0.345 4.345 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.165 -19.071 1.199 21.193 hybrid contribution 0.964 0.447 0.637 1.239 sum -8.201 -18.624 1.836 20.433 Atomic orbital electron populations 1.21764 0.95878 1.01312 1.02039 1.21586 0.95918 0.96833 1.01882 1.21445 0.92488 0.96394 1.03555 1.21331 0.97538 0.94008 1.00232 0.89208 1.21853 1.01711 1.00802 0.96010 1.20593 0.81717 0.91200 0.76462 1.90701 1.55541 1.45563 1.48986 1.47884 1.08641 1.08217 1.69780 1.21839 0.93496 0.89330 1.01834 1.21892 0.99738 0.80423 0.98721 1.22428 0.92820 0.89309 0.93164 0.94434 1.23640 0.97812 0.99489 0.98426 1.21959 0.90337 0.97398 0.87240 1.45635 1.64535 1.06723 1.15844 1.18880 1.26430 0.97141 0.92073 0.90299 1.24820 1.00884 0.97684 0.97035 1.69853 1.49633 1.15171 1.21827 0.86148 0.79881 0.79111 0.80801 1.21661 1.21647 1.20603 0.92639 0.92959 0.92744 0.91792 0.92227 0.91538 0.90954 0.91829 0.91596 0.91926 0.91007 0.91456 0.92580 0.91237 0.89560 0.90005 0.93393 0.91879 0.95877 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.12 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.10 -1.06 4.00 -26.73 -0.11 -1.17 16 4 C -0.11 -1.17 1.91 -91.77 -0.18 -1.34 16 5 H 0.09 0.79 6.83 -51.93 -0.35 0.44 16 6 C -0.15 -1.33 8.62 37.16 0.32 -1.01 16 7 C 0.51 7.77 6.91 -10.98 -0.08 7.70 16 8 O -0.53 -10.19 15.25 5.55 0.08 -10.11 16 9 N -0.61 -9.10 2.87 -181.57 -0.52 -9.62 16 10 C 0.08 0.83 9.18 59.85 0.55 1.38 16 11 C 0.12 2.16 5.40 -4.04 -0.02 2.14 16 12 C 0.13 2.81 4.31 -72.34 -0.31 2.50 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -3.34 7.69 -26.16 -0.20 -3.54 16 15 C 0.16 3.95 7.25 -8.51 -0.06 3.89 16 16 N -0.60 -15.91 3.65 -176.81 -0.64 -16.56 16 17 C -0.22 -6.18 10.55 -15.06 -0.16 -6.34 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -28.06 11.67 55.49 0.65 -27.42 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.46 6.71 -51.93 -0.35 0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.06 0.56 5.84 -51.93 -0.30 0.26 16 33 H 0.07 0.46 6.87 -51.93 -0.36 0.10 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 36 H 0.07 0.54 6.14 -51.93 -0.32 0.22 16 37 H 0.06 0.56 7.18 -51.93 -0.37 0.19 16 38 H 0.07 1.29 7.95 -51.93 -0.41 0.87 16 39 H 0.09 1.82 7.12 -51.93 -0.37 1.45 16 40 H 0.08 1.86 7.92 -51.93 -0.41 1.45 16 41 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 42 H 0.06 1.74 7.42 -51.93 -0.39 1.36 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -33.08 346.64 -8.17 -41.25 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.82 Total: -2.14 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.12 Total: 1.96 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.52 Total: -53.60 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.08 -8.17 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.072 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds