Wall clock time and date at job start Mon Mar 30 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47497 * 2 1 4 4 C 1.52998 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47303 * 304.99400 * 4 3 2 6 6 C 1.53002 * 109.47478 * 65.00099 * 4 3 2 7 7 C 1.50708 * 109.46974 * 184.99960 * 4 3 2 8 8 O 1.21288 * 119.99811 * 345.86874 * 7 4 3 9 9 N 1.34771 * 120.00252 * 165.87549 * 7 4 3 10 10 C 1.46499 * 120.00014 * 5.74270 * 9 7 4 11 11 C 1.46502 * 120.00084 * 185.75005 * 9 7 4 12 12 C 1.52999 * 109.47005 * 264.47346 * 11 9 7 13 13 H 1.08995 * 112.73750 * 314.29443 * 12 11 9 14 14 C 1.53614 * 113.55452 * 85.04536 * 12 11 9 15 15 C 1.53495 * 83.30473 * 140.82589 * 14 12 11 16 16 N 1.47065 * 113.46493 * 183.54592 * 12 11 9 17 17 C 1.36938 * 136.05743 * 38.00930 * 16 12 11 18 18 H 1.07998 * 120.00143 * 353.70434 * 17 16 12 19 19 C 1.38814 * 119.99586 * 173.69808 * 17 16 12 20 20 N 1.31618 * 120.00380 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47141 * 90.00035 * 21 19 17 23 23 H 1.48498 * 109.46971 * 210.00098 * 21 19 17 24 24 H 1.48496 * 109.46948 * 330.00303 * 21 19 17 25 25 H 1.09005 * 109.47002 * 60.00338 * 1 2 3 26 26 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47084 * 300.00650 * 1 2 3 28 28 H 1.09007 * 109.47520 * 239.99594 * 2 1 3 29 29 H 1.09005 * 109.47002 * 119.99662 * 2 1 3 30 30 H 1.08994 * 109.47234 * 59.99688 * 3 2 1 31 31 H 1.09005 * 109.46719 * 299.99835 * 3 2 1 32 32 H 1.08995 * 109.47234 * 173.83873 * 6 4 3 33 33 H 1.08999 * 109.46556 * 293.84563 * 6 4 3 34 34 H 1.09002 * 109.46719 * 53.84255 * 6 4 3 35 35 H 1.08994 * 109.47588 * 206.63800 * 10 9 7 36 36 H 1.09007 * 109.47289 * 326.63764 * 10 9 7 37 37 H 1.08999 * 109.47024 * 86.63321 * 10 9 7 38 38 H 1.09002 * 109.47224 * 144.47343 * 11 9 7 39 39 H 1.09002 * 109.46886 * 24.47870 * 11 9 7 40 40 H 1.08994 * 114.20851 * 27.25080 * 14 12 11 41 41 H 1.09010 * 114.23555 * 254.39569 * 14 12 11 42 42 H 1.08997 * 113.47005 * 219.16855 * 15 14 12 43 43 H 1.09002 * 113.47108 * 88.78552 * 15 14 12 44 44 H 0.96998 * 120.00197 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8325 -1.3064 7 6 4.0724 2.8578 0.1245 8 8 3.3143 3.7880 -0.0520 9 7 5.3640 3.0901 0.4312 10 6 6.3079 1.9733 0.5205 11 6 5.8241 4.4594 0.6755 12 6 6.4179 5.0351 -0.6117 13 1 7.0918 4.3401 -1.1124 14 6 5.3689 5.6512 -1.5497 15 6 6.4563 6.7104 -1.7770 16 7 6.9840 6.3820 -0.4441 17 6 7.6909 7.0408 0.5263 18 1 7.8640 6.5692 1.4823 19 6 8.1850 8.3146 0.2810 20 7 7.9738 8.8894 -0.8840 21 14 9.1499 9.2129 1.6045 22 1 10.5940 8.8957 1.4657 23 1 8.9482 10.6767 1.4565 24 1 8.6746 8.7805 2.9432 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 5.1650 0.9316 -1.3543 33 1 3.8099 -0.2226 -1.3450 34 1 3.6304 1.3543 -2.1509 35 1 7.1190 2.2364 1.1995 36 1 5.7914 1.0901 0.8966 37 1 6.7157 1.7623 -0.4681 38 1 6.5853 4.4532 1.4557 39 1 4.9823 5.0741 0.9942 40 1 4.4799 6.0251 -1.0418 41 1 5.1437 5.0462 -2.4280 42 1 6.0652 7.7251 -1.8510 43 1 7.1409 6.4626 -2.5881 44 1 8.3188 9.7796 -1.0553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231312691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:20 Heat of formation + Delta-G solvation = -14.325609 kcal Electronic energy + Delta-G solvation = -21334.519677 eV Core-core repulsion = 18287.601976 eV Total energy + Delta-G solvation = -3046.917701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26545 -39.75148 -36.89623 -36.44928 -34.29405 -32.90592 -29.96642 -29.78039 -27.63076 -27.31664 -25.46493 -24.94328 -23.40715 -21.61799 -21.03988 -19.78449 -18.74696 -17.91038 -17.25059 -16.96735 -16.49506 -16.05323 -15.84026 -15.37957 -15.04473 -14.78203 -14.33861 -14.14685 -13.82278 -13.67616 -13.44712 -13.34520 -13.07063 -13.05419 -12.96596 -12.64617 -12.63359 -12.52417 -12.27893 -12.05358 -11.84502 -11.79484 -11.68689 -11.62819 -11.36604 -11.16561 -10.87098 -10.53481 -9.57008 -8.91660 -7.91583 -5.25305 1.44243 1.47350 1.55719 1.73212 2.06110 2.48434 3.29083 3.41276 3.63053 3.85218 3.85641 4.02166 4.18669 4.26962 4.33339 4.37187 4.41231 4.43601 4.48790 4.63329 4.69472 4.80269 4.83559 4.86229 4.89114 4.96459 4.99169 5.03912 5.06290 5.09012 5.16753 5.19316 5.29857 5.34948 5.45999 5.49138 5.52959 5.55925 5.72021 5.90788 6.52908 6.88442 7.29375 7.59073 8.61145 9.27569 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.003856 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.497235 B = 7259.963994 C = 7391.402284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.099 4.099 5 H 0.120 0.880 6 C -0.143 4.143 7 C 0.504 3.496 8 O -0.582 6.582 9 N -0.611 5.611 10 C 0.070 3.930 11 C 0.130 3.870 12 C 0.138 3.862 13 H 0.053 0.947 14 C -0.131 4.131 15 C 0.153 3.847 16 N -0.629 5.629 17 C -0.225 4.225 18 H 0.091 0.909 19 C -0.072 4.072 20 N -0.957 5.957 21 Si 0.982 3.018 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.265 1.265 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.028 0.972 43 H 0.020 0.980 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 -23.179 2.146 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.120 4.120 5 H 0.138 0.862 6 C -0.200 4.200 7 C 0.294 3.706 8 O -0.461 6.461 9 N -0.343 5.343 10 C -0.071 4.071 11 C 0.005 3.995 12 C 0.031 3.969 13 H 0.070 0.930 14 C -0.169 4.169 15 C 0.027 3.973 16 N -0.355 5.355 17 C -0.353 4.353 18 H 0.108 0.892 19 C -0.265 4.265 20 N -0.606 5.606 21 Si 0.809 3.191 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.190 1.190 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.649 -22.438 2.228 24.150 hybrid contribution 0.751 1.424 0.291 1.636 sum -7.897 -21.015 2.519 22.591 Atomic orbital electron populations 1.21789 0.95956 1.02087 1.01439 1.21553 0.95858 0.94826 1.03234 1.21418 0.92695 0.97996 1.01628 1.21377 0.97259 0.91007 1.02384 0.86250 1.21872 1.01901 1.02146 0.94118 1.21541 0.81231 0.92753 0.75081 1.90683 1.56809 1.47513 1.51106 1.47950 1.09497 1.07533 1.69361 1.22163 0.93213 0.88800 1.02940 1.21411 0.98400 0.82570 0.97115 1.22500 0.92171 0.87720 0.94461 0.92981 1.23366 0.96240 0.98137 0.99174 1.21914 0.91508 0.96608 0.87223 1.45947 1.64580 1.09194 1.15799 1.19340 1.25446 0.97476 0.93001 0.89172 1.25737 1.02531 0.98782 0.99405 1.70055 1.51250 1.15254 1.24067 0.85029 0.78349 0.77049 0.78623 1.21012 1.22386 1.18952 0.93346 0.91444 0.93376 0.90415 0.90713 0.93426 0.93133 0.91174 0.88624 0.93580 0.90575 0.87992 0.91455 0.90793 0.92566 0.91618 0.90921 0.95337 0.96264 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -1.52 5.69 30.59 0.17 -1.35 16 3 C -0.10 -1.96 4.00 30.59 0.12 -1.84 16 4 C -0.10 -1.83 1.91 -11.54 -0.02 -1.86 16 5 H 0.12 1.54 6.83 -2.39 -0.02 1.52 16 6 C -0.14 -2.08 8.62 71.98 0.62 -1.46 16 7 C 0.50 14.66 6.91 87.66 0.61 15.27 16 8 O -0.58 -22.66 15.25 -3.05 -0.05 -22.70 16 9 N -0.61 -17.00 2.87 -846.74 -2.43 -19.44 16 10 C 0.07 1.23 9.18 127.77 1.17 2.40 16 11 C 0.13 4.80 5.40 86.38 0.47 5.26 16 12 C 0.14 5.87 4.31 41.83 0.18 6.05 16 13 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.13 -5.70 7.69 30.97 0.24 -5.46 16 15 C 0.15 7.99 7.25 83.18 0.60 8.60 16 16 N -0.63 -33.75 3.65 -713.30 -2.60 -36.35 16 17 C -0.22 -12.84 10.55 84.03 0.89 -11.95 16 18 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 19 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 20 N -0.96 -60.30 11.67 21.65 0.25 -60.05 16 21 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.82 6.71 -2.38 -0.02 0.80 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.20 8.09 -2.38 -0.02 1.19 16 32 H 0.07 0.95 5.84 -2.39 -0.01 0.94 16 33 H 0.10 0.86 6.87 -2.39 -0.02 0.85 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.30 7.91 -2.39 -0.02 1.28 16 36 H 0.10 1.10 6.14 -2.38 -0.01 1.08 16 37 H 0.07 1.07 7.18 -2.39 -0.02 1.05 16 38 H 0.07 2.66 7.95 -2.39 -0.02 2.64 16 39 H 0.06 2.42 7.12 -2.39 -0.02 2.41 16 40 H 0.07 3.09 7.92 -2.39 -0.02 3.07 16 41 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 42 H 0.03 1.65 7.42 -2.39 -0.02 1.63 16 43 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.60 346.64 4.38 -70.23 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.95 Total: 11.12 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.23 Total: 8.54 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -4.78 Total: -115.83 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -74.60 4.38 -70.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231312691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.900 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds