Wall clock time and date at job start Mon Mar 30 2020 00:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47207 * 2 1 4 4 C 1.52997 * 109.46824 * 239.99285 * 2 1 3 5 5 N 1.46897 * 109.46752 * 119.99822 * 2 1 3 6 6 C 1.46898 * 111.00122 * 60.00101 * 5 2 1 7 7 C 1.53246 * 109.33920 * 172.74589 * 6 5 2 8 8 N 1.47077 * 108.52284 * 53.82904 * 7 6 5 9 9 C 1.34776 * 120.88247 * 128.79469 * 8 7 6 10 10 O 1.21279 * 119.99916 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99744 * 180.02562 * 9 8 7 12 12 C 1.53006 * 109.47072 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47072 * 180.02562 * 12 11 9 14 14 H 1.07993 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99626 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00493 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99970 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47081 * 89.99723 * 17 15 13 19 19 H 1.48505 * 109.47064 * 209.99855 * 17 15 13 20 20 H 1.48499 * 109.46782 * 329.99810 * 17 15 13 21 21 C 1.47081 * 118.23534 * 308.81269 * 8 7 6 22 22 C 1.46897 * 110.99998 * 295.69374 * 5 2 1 23 23 H 1.08998 * 109.47215 * 300.00444 * 1 2 3 24 24 H 1.09000 * 109.47103 * 59.99958 * 1 2 3 25 25 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47104 * 299.99476 * 3 2 1 28 28 H 1.08998 * 109.47396 * 59.99666 * 3 2 1 29 29 H 1.08996 * 109.47607 * 300.00196 * 4 2 1 30 30 H 1.09001 * 109.47124 * 60.00746 * 4 2 1 31 31 H 1.09001 * 109.46950 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.49724 * 52.78734 * 6 5 2 33 33 H 1.09005 * 109.49070 * 292.70056 * 6 5 2 34 34 H 1.09006 * 109.62559 * 173.53557 * 7 6 5 35 35 H 1.08993 * 109.62525 * 294.11798 * 7 6 5 36 36 H 1.09004 * 109.47107 * 299.99789 * 11 9 8 37 37 H 1.08997 * 109.47663 * 60.00095 * 11 9 8 38 38 H 1.09008 * 109.46500 * 299.99685 * 12 11 9 39 39 H 1.08997 * 109.46827 * 59.99549 * 12 11 9 40 40 H 0.97003 * 120.00635 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.62944 * 170.89122 * 21 8 7 42 42 H 1.08999 * 109.63243 * 291.47520 * 21 8 7 43 43 H 1.08999 * 109.49205 * 67.29797 * 22 5 2 44 44 H 1.08997 * 109.51913 * 307.22880 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 2.0196 -0.6925 1.1995 6 6 1.5486 -2.0835 1.2334 7 6 2.2236 -2.8196 2.3957 8 7 1.9927 -2.0545 3.6304 9 6 1.5003 -2.6528 4.7332 10 8 1.2410 -3.8374 4.7157 11 6 1.2709 -1.8495 5.9874 12 6 0.7121 -2.7612 7.0819 13 6 0.4822 -1.9578 8.3359 14 1 0.7120 -0.9027 8.3510 15 6 -0.0216 -2.5699 9.4640 16 7 -0.3019 -3.8546 9.4455 17 14 -0.3060 -1.5742 11.0188 18 1 -1.6836 -1.0201 11.0066 19 1 -0.1352 -2.4503 12.2057 20 1 0.6748 -0.4610 11.0799 21 6 2.3130 -0.6190 3.6297 22 6 1.6344 0.0306 2.4188 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2076 -2.1392 31 1 3.1299 -0.7210 -1.2494 32 1 1.8017 -2.5763 0.2948 33 1 0.4675 -2.0981 1.3725 34 1 1.7938 -3.8162 2.4968 35 1 3.2943 -2.8968 2.2076 36 1 2.2151 -1.4189 6.3209 37 1 0.5594 -1.0499 5.7818 38 1 -0.2320 -3.1922 6.7486 39 1 1.4241 -3.5606 7.2873 40 1 -0.6567 -4.2852 10.2390 41 1 1.9423 -0.1606 4.5465 42 1 3.3924 -0.4846 3.5602 43 1 0.5522 -0.0135 2.5413 44 1 1.9495 1.0710 2.3401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261211753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:21 Heat of formation + Delta-G solvation = -36.855988 kcal Electronic energy + Delta-G solvation = -21365.681092 eV Core-core repulsion = 18317.786400 eV Total energy + Delta-G solvation = -3047.894692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27704 -38.70134 -35.72023 -33.50616 -32.22550 -31.57410 -30.64428 -27.68474 -27.60785 -26.85025 -25.37984 -23.32593 -22.14872 -20.84412 -19.31041 -18.16078 -17.06469 -16.27892 -15.58875 -15.47304 -15.16750 -15.12418 -14.68368 -14.39887 -14.31599 -14.02568 -13.20576 -13.16958 -12.71449 -12.59233 -12.20874 -12.14516 -12.09064 -11.93894 -11.88357 -11.74153 -11.27759 -11.10498 -11.07007 -10.92671 -10.90650 -10.62215 -10.56334 -9.94152 -9.59376 -9.15172 -8.95829 -8.64924 -8.31655 -8.19811 -5.94619 -3.99076 3.24261 3.27721 3.34045 3.40215 3.42938 3.68540 4.47908 4.50180 4.62414 4.74695 4.89774 4.93707 5.09223 5.22317 5.24931 5.33221 5.35861 5.37982 5.40198 5.48253 5.50150 5.58082 5.59887 5.65075 5.67288 5.80544 5.84620 5.94824 5.98446 6.01082 6.12877 6.22277 6.24510 6.74337 6.89018 6.91843 6.97105 7.75876 7.81322 7.88221 8.08917 8.40154 8.78132 9.09469 9.64346 11.16345 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034399 B = 0.003702 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.785549 B = 7561.968921 C = 7994.495722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.101 3.899 3 C -0.141 4.141 4 C -0.139 4.139 5 N -0.525 5.525 6 C 0.037 3.963 7 C 0.116 3.884 8 N -0.626 5.626 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.128 4.128 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.115 3.885 22 C 0.034 3.966 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 10.502 -21.447 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.011 3.989 3 C -0.199 4.199 4 C -0.197 4.197 5 N -0.250 5.250 6 C -0.091 4.091 7 C -0.007 4.007 8 N -0.363 5.363 9 C 0.303 3.697 10 O -0.411 6.411 11 C -0.168 4.168 12 C 0.000 4.000 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.009 4.009 22 C -0.095 4.095 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.507 9.682 -21.338 24.071 hybrid contribution -1.115 0.596 0.849 1.522 sum 4.393 10.279 -20.490 23.340 Atomic orbital electron populations 1.22504 0.96968 1.02297 1.02302 1.21078 0.92474 0.94571 0.90761 1.21927 1.01926 0.94276 1.01734 1.21892 1.01900 1.00120 0.95767 1.62196 1.59422 1.01884 1.01475 1.22584 0.97971 0.89253 0.99311 1.21564 1.00240 0.96027 0.82863 1.48351 1.66173 1.09541 1.12226 1.21580 0.75021 0.88442 0.84668 1.90651 1.50506 1.16303 1.83654 1.21870 1.02122 1.00011 0.92762 1.18905 0.96829 0.93941 0.90364 1.21217 1.43281 0.95404 0.96570 0.92626 1.25026 0.95626 0.94878 0.98863 1.69999 1.44021 1.09616 1.29206 0.86594 0.78491 0.79958 0.82922 1.20701 1.21224 1.19864 1.21779 1.00242 0.80678 0.98213 1.22620 0.98590 0.98473 0.89809 0.92338 0.92137 0.92330 0.91684 0.92308 0.92286 0.92453 0.92342 0.91721 0.89583 0.94138 0.88958 0.91472 0.90275 0.90435 0.95918 0.95819 0.92961 0.88814 0.91044 0.94042 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 7.79 37.16 0.29 -1.27 16 2 C 0.10 0.84 0.71 -131.61 -0.09 0.75 16 3 C -0.14 -1.02 8.12 37.15 0.30 -0.72 16 4 C -0.14 -1.03 8.26 37.16 0.31 -0.73 16 5 N -0.52 -5.30 4.44 -218.67 -0.97 -6.28 16 6 C 0.04 0.41 4.77 -3.70 -0.02 0.40 16 7 C 0.12 1.58 6.60 -3.60 -0.02 1.55 16 8 N -0.63 -9.72 3.01 -172.46 -0.52 -10.24 16 9 C 0.51 10.37 7.71 -10.99 -0.08 10.28 16 10 O -0.54 -13.05 15.43 5.56 0.09 -12.97 16 11 C -0.13 -2.67 4.00 -27.88 -0.11 -2.78 16 12 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 13 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.11 1.38 6.50 -3.60 -0.02 1.36 16 22 C 0.03 0.35 4.81 -3.70 -0.02 0.33 16 23 H 0.06 0.54 6.67 -51.93 -0.35 0.19 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 6.57 -51.93 -0.34 0.20 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 6.19 -51.93 -0.32 0.11 16 29 H 0.06 0.43 6.25 -51.93 -0.32 0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.82 5.95 -51.93 -0.31 0.51 16 33 H 0.04 0.50 6.72 -51.93 -0.35 0.15 16 34 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.52 8.00 -51.93 -0.42 1.10 16 37 H 0.08 1.48 7.66 -51.93 -0.40 1.08 16 38 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.09 1.11 6.02 -51.93 -0.31 0.79 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.48 6.79 -51.93 -0.35 0.12 16 44 H 0.09 0.77 5.83 -51.93 -0.30 0.47 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -33.52 334.09 -8.14 -41.66 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.48 Total: -3.30 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 0.00 Total: -3.72 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.75 Total: -43.46 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.52 -8.14 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261211753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.804 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds