Wall clock time and date at job start Mon Mar 30 2020 00:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47207 * 2 1 4 4 C 1.52997 * 109.46824 * 239.99285 * 2 1 3 5 5 N 1.46897 * 109.46752 * 119.99822 * 2 1 3 6 6 C 1.46898 * 111.00122 * 60.00101 * 5 2 1 7 7 C 1.53246 * 109.33920 * 172.74589 * 6 5 2 8 8 N 1.47077 * 108.52284 * 53.82904 * 7 6 5 9 9 C 1.34776 * 120.88247 * 128.79469 * 8 7 6 10 10 O 1.21279 * 119.99916 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99744 * 180.02562 * 9 8 7 12 12 C 1.53006 * 109.47072 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47072 * 180.02562 * 12 11 9 14 14 H 1.07993 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99626 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00493 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99970 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47081 * 89.99723 * 17 15 13 19 19 H 1.48505 * 109.47064 * 209.99855 * 17 15 13 20 20 H 1.48499 * 109.46782 * 329.99810 * 17 15 13 21 21 C 1.47081 * 118.23534 * 308.81269 * 8 7 6 22 22 C 1.46897 * 110.99998 * 295.69374 * 5 2 1 23 23 H 1.08998 * 109.47215 * 300.00444 * 1 2 3 24 24 H 1.09000 * 109.47103 * 59.99958 * 1 2 3 25 25 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47104 * 299.99476 * 3 2 1 28 28 H 1.08998 * 109.47396 * 59.99666 * 3 2 1 29 29 H 1.08996 * 109.47607 * 300.00196 * 4 2 1 30 30 H 1.09001 * 109.47124 * 60.00746 * 4 2 1 31 31 H 1.09001 * 109.46950 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.49724 * 52.78734 * 6 5 2 33 33 H 1.09005 * 109.49070 * 292.70056 * 6 5 2 34 34 H 1.09006 * 109.62559 * 173.53557 * 7 6 5 35 35 H 1.08993 * 109.62525 * 294.11798 * 7 6 5 36 36 H 1.09004 * 109.47107 * 299.99789 * 11 9 8 37 37 H 1.08997 * 109.47663 * 60.00095 * 11 9 8 38 38 H 1.09008 * 109.46500 * 299.99685 * 12 11 9 39 39 H 1.08997 * 109.46827 * 59.99549 * 12 11 9 40 40 H 0.97003 * 120.00635 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.62944 * 170.89122 * 21 8 7 42 42 H 1.08999 * 109.63243 * 291.47520 * 21 8 7 43 43 H 1.08999 * 109.49205 * 67.29797 * 22 5 2 44 44 H 1.08997 * 109.51913 * 307.22880 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 2.0196 -0.6925 1.1995 6 6 1.5486 -2.0835 1.2334 7 6 2.2236 -2.8196 2.3957 8 7 1.9927 -2.0545 3.6304 9 6 1.5003 -2.6528 4.7332 10 8 1.2410 -3.8374 4.7157 11 6 1.2709 -1.8495 5.9874 12 6 0.7121 -2.7612 7.0819 13 6 0.4822 -1.9578 8.3359 14 1 0.7120 -0.9027 8.3510 15 6 -0.0216 -2.5699 9.4640 16 7 -0.3019 -3.8546 9.4455 17 14 -0.3060 -1.5742 11.0188 18 1 -1.6836 -1.0201 11.0066 19 1 -0.1352 -2.4503 12.2057 20 1 0.6748 -0.4610 11.0799 21 6 2.3130 -0.6190 3.6297 22 6 1.6344 0.0306 2.4188 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2076 -2.1392 31 1 3.1299 -0.7210 -1.2494 32 1 1.8017 -2.5763 0.2948 33 1 0.4675 -2.0981 1.3725 34 1 1.7938 -3.8162 2.4968 35 1 3.2943 -2.8968 2.2076 36 1 2.2151 -1.4189 6.3209 37 1 0.5594 -1.0499 5.7818 38 1 -0.2320 -3.1922 6.7486 39 1 1.4241 -3.5606 7.2873 40 1 -0.6567 -4.2852 10.2390 41 1 1.9423 -0.1606 4.5465 42 1 3.3924 -0.4846 3.5602 43 1 0.5522 -0.0135 2.5413 44 1 1.9495 1.0710 2.3401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261211753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:20 Heat of formation + Delta-G solvation = -59.645269 kcal Electronic energy + Delta-G solvation = -21366.669309 eV Core-core repulsion = 18317.786400 eV Total energy + Delta-G solvation = -3048.882909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40117 -39.94198 -36.90728 -35.61636 -33.52805 -32.75342 -32.17885 -28.55182 -28.25003 -28.09689 -27.01814 -24.46023 -23.68325 -22.23288 -20.34440 -19.41421 -18.73449 -17.74893 -16.90175 -16.84337 -16.51693 -16.38656 -16.01026 -15.54779 -15.21055 -14.96406 -14.54121 -14.50158 -14.21896 -13.68642 -13.47859 -13.34230 -13.26900 -12.82628 -12.76398 -12.73091 -12.68920 -12.62724 -12.43206 -11.96795 -11.92665 -11.90245 -11.85084 -11.57532 -11.33597 -11.30244 -10.67377 -10.57457 -9.78529 -9.19988 -8.18196 -6.32719 1.42069 1.45160 1.56164 1.65930 2.00916 2.43120 2.84691 3.14676 3.66647 3.82707 3.93265 3.99623 4.07279 4.22000 4.25881 4.34692 4.37869 4.44122 4.50455 4.52213 4.66909 4.71384 4.74225 4.77201 4.87000 4.94804 4.97492 5.01844 5.03877 5.04554 5.10306 5.24913 5.38962 5.46522 5.47313 5.57851 5.60559 5.83920 6.07668 6.14930 6.16578 6.41696 6.85519 7.23760 7.37717 8.94644 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034399 B = 0.003702 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.785549 B = 7561.968921 C = 7994.495722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 C -0.138 4.138 4 C -0.137 4.137 5 N -0.525 5.525 6 C 0.048 3.952 7 C 0.113 3.887 8 N -0.615 5.615 9 C 0.509 3.491 10 O -0.592 6.592 11 C -0.114 4.114 12 C 0.044 3.956 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.976 3.024 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.254 1.254 21 C 0.107 3.893 22 C 0.038 3.962 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.101 0.899 38 H -0.021 1.021 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 13.797 -22.316 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.009 3.991 3 C -0.195 4.195 4 C -0.195 4.195 5 N -0.250 5.250 6 C -0.081 4.081 7 C -0.010 4.010 8 N -0.349 5.349 9 C 0.300 3.700 10 O -0.472 6.472 11 C -0.154 4.154 12 C 0.006 3.994 13 C -0.580 4.580 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.177 1.177 21 C -0.015 4.015 22 C -0.091 4.091 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.119 0.881 38 H -0.002 1.002 39 H 0.000 1.000 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.415 13.045 -22.263 26.588 hybrid contribution -1.361 -0.429 1.015 1.751 sum 5.055 12.615 -21.248 25.223 Atomic orbital electron populations 1.22483 0.97179 1.01590 1.02571 1.21204 0.92293 0.95365 0.90205 1.21908 1.01933 0.93236 1.02456 1.21882 1.01862 0.99952 0.95776 1.62232 1.59318 1.01288 1.02143 1.22452 0.96648 0.90149 0.98819 1.21703 1.01243 0.95219 0.82795 1.48338 1.63965 1.11219 1.11363 1.21421 0.75249 0.87625 0.85750 1.90630 1.53375 1.18518 1.84689 1.21622 1.03414 0.99035 0.91306 1.18686 0.93967 0.93971 0.92781 1.21699 1.42943 0.96436 0.96941 0.90474 1.26165 0.95093 0.96010 1.03248 1.70185 1.45147 1.12025 1.30502 0.85296 0.79052 0.78403 0.77342 1.19690 1.21213 1.17726 1.22110 1.01635 0.78226 0.99545 1.22612 0.97695 0.99587 0.89160 0.93146 0.90781 0.93550 0.91605 0.91040 0.92188 0.92852 0.90984 0.91717 0.87686 0.95704 0.91330 0.89938 0.87869 0.88111 1.00209 1.00045 0.92852 0.88250 0.89210 0.95244 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 7.79 71.98 0.56 -2.17 16 2 C 0.10 1.39 0.71 3.52 0.00 1.39 16 3 C -0.14 -1.54 8.12 71.98 0.58 -0.96 16 4 C -0.14 -1.67 8.26 71.98 0.59 -1.08 16 5 N -0.52 -9.39 4.44 -845.75 -3.76 -13.15 16 6 C 0.05 1.01 4.77 86.39 0.41 1.42 16 7 C 0.11 3.04 6.60 86.35 0.57 3.61 16 8 N -0.61 -18.75 3.01 -817.92 -2.46 -21.22 16 9 C 0.51 21.11 7.71 87.66 0.68 21.78 16 10 O -0.59 -30.61 15.43 -3.03 -0.05 -30.65 16 11 C -0.11 -4.78 4.00 29.85 0.12 -4.66 16 12 C 0.04 2.49 4.26 29.85 0.13 2.62 16 13 C -0.54 -31.26 9.11 25.60 0.23 -31.02 16 14 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 15 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 16 N -0.94 -60.35 13.29 21.45 0.28 -60.07 16 17 Si 0.98 44.56 29.54 68.60 2.03 46.58 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 21 C 0.11 2.32 6.50 86.35 0.56 2.89 16 22 C 0.04 0.69 4.81 86.39 0.42 1.11 16 23 H 0.05 0.85 6.67 -2.39 -0.02 0.83 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.82 6.57 -2.39 -0.02 0.80 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.66 6.19 -2.39 -0.01 0.65 16 29 H 0.05 0.69 6.25 -2.39 -0.01 0.67 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.83 5.95 -2.39 -0.01 1.82 16 33 H 0.02 0.61 6.72 -2.38 -0.02 0.59 16 34 H 0.07 2.19 7.06 -2.38 -0.02 2.17 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 3.80 8.00 -2.38 -0.02 3.78 16 37 H 0.10 3.73 7.66 -2.39 -0.02 3.71 16 38 H -0.02 -1.33 8.10 -2.38 -0.02 -1.35 16 39 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 40 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.10 2.07 6.02 -2.39 -0.01 2.05 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.03 0.62 6.79 -2.39 -0.02 0.61 16 44 H 0.12 1.56 5.83 -2.39 -0.01 1.55 16 Total: -1.00 -76.33 334.09 2.33 -74.01 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.96 Total: 9.57 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.32 Total: -5.07 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -5.93 Total: -94.43 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.33 2.33 -74.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261211753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.360 kcal (2) G-P(sol) polarization free energy of solvation -76.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds