Wall clock time and date at job start Mon Mar 30 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47346 * 2 1 4 4 C 1.53002 * 109.46907 * 184.93870 * 3 2 1 5 5 H 1.08991 * 110.00097 * 306.55692 * 4 3 2 6 6 C 1.54310 * 109.77137 * 67.71888 * 4 3 2 7 7 C 1.55158 * 102.86180 * 141.88349 * 6 4 3 8 8 C 1.54911 * 101.58165 * 324.29853 * 7 6 4 9 9 N 1.47028 * 109.87573 * 185.46522 * 4 3 2 10 10 C 1.34776 * 125.64879 * 61.68070 * 9 4 3 11 11 O 1.21587 * 119.99963 * 354.79374 * 10 9 4 12 12 N 1.34774 * 119.99735 * 174.79111 * 10 9 4 13 13 C 1.46504 * 120.00029 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47075 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46609 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46803 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99996 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99586 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00534 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99529 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47034 * 90.00252 * 20 18 16 22 22 H 1.48500 * 109.46652 * 210.00113 * 20 18 16 23 23 H 1.48503 * 109.47160 * 329.99679 * 20 18 16 24 24 H 1.08999 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47081 * 300.00132 * 1 2 3 26 26 H 1.09004 * 109.46845 * 59.99852 * 1 2 3 27 27 H 1.09002 * 109.47209 * 240.00459 * 2 1 3 28 28 H 1.09003 * 109.47355 * 120.00277 * 2 1 3 29 29 H 1.09000 * 109.46845 * 64.93996 * 3 2 1 30 30 H 1.09001 * 109.46980 * 304.94170 * 3 2 1 31 31 H 1.08997 * 110.92864 * 23.46998 * 6 4 3 32 32 H 1.08996 * 110.58895 * 260.13675 * 6 4 3 33 33 H 1.09003 * 111.00363 * 206.22912 * 7 6 4 34 34 H 1.09003 * 111.00854 * 82.37096 * 7 6 4 35 35 H 1.09004 * 110.36698 * 278.17171 * 8 7 6 36 36 H 1.09003 * 110.46407 * 155.89183 * 8 7 6 37 37 H 0.96998 * 120.00515 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.46996 * 59.99489 * 13 12 10 39 39 H 1.09000 * 109.46668 * 300.00037 * 13 12 10 40 40 H 1.08998 * 109.47430 * 60.00297 * 14 13 12 41 41 H 1.09000 * 109.47320 * 299.99536 * 14 13 12 42 42 H 1.08999 * 109.47191 * 60.00440 * 15 14 13 43 43 H 1.09000 * 109.47629 * 299.99712 * 15 14 13 44 44 H 0.96998 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.4442 -0.1242 5 1 4.0026 0.8112 0.6477 6 6 3.9755 0.9330 -1.5211 7 6 5.1864 1.8355 -1.8770 8 6 4.7651 3.1851 -1.2441 9 7 4.0756 2.8168 0.0059 10 6 3.9408 3.6055 1.0905 11 8 3.2744 3.2306 2.0358 12 7 4.5448 4.8098 1.1271 13 6 4.3988 5.6670 2.3062 14 6 5.1769 6.9667 2.0914 15 6 5.0237 7.8621 3.3226 16 6 5.7907 9.1421 3.1113 17 1 6.3327 9.3011 2.1908 18 6 5.7995 10.1104 4.0927 19 7 5.1391 9.9169 5.2134 20 14 6.7496 11.6973 3.8305 21 1 5.8645 12.7045 3.1924 22 1 7.2228 12.2130 5.1402 23 1 7.9169 11.4357 2.9506 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7508 1.9301 0.9309 30 1 1.6063 1.9813 -0.8424 31 1 3.1673 1.0711 -2.2392 32 1 4.2757 -0.1137 -1.4732 33 1 5.2998 1.9290 -2.9571 34 1 6.1020 1.4589 -1.4208 35 1 4.0863 3.7202 -1.9083 36 1 5.6423 3.7949 -1.0278 37 1 5.0762 5.1091 0.3728 38 1 4.7897 5.1495 3.1822 39 1 3.3444 5.8964 2.4602 40 1 4.7854 7.4840 1.2154 41 1 6.2313 6.7376 1.9371 42 1 5.4149 7.3450 4.1988 43 1 3.9693 8.0911 3.4765 44 1 5.1457 10.5980 5.9040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263080213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:41 Heat of formation + Delta-G solvation = -61.045544 kcal Electronic energy + Delta-G solvation = -20474.341526 eV Core-core repulsion = 17425.397896 eV Total energy + Delta-G solvation = -3048.943630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36941 -37.94924 -35.31962 -34.85702 -33.25822 -31.86597 -30.78478 -29.86382 -26.62710 -25.83980 -23.65309 -22.44301 -21.96353 -20.77015 -20.57527 -19.30975 -17.86192 -16.65816 -16.28749 -15.51308 -15.33781 -15.00380 -14.48684 -14.27467 -14.06431 -13.87125 -13.62245 -13.17255 -13.11369 -12.75777 -12.27098 -12.24281 -11.87123 -11.77234 -11.62261 -11.46133 -11.19055 -11.13075 -10.95597 -10.88716 -10.68996 -10.60885 -10.56229 -9.91800 -9.83558 -9.41058 -9.10770 -8.87308 -8.40686 -8.35782 -6.00369 -4.03440 2.70981 3.31562 3.37830 3.39424 3.40648 4.07022 4.29341 4.42564 4.46493 4.58144 4.80350 4.89430 4.97528 5.10737 5.15025 5.31355 5.35345 5.37340 5.47041 5.56318 5.62736 5.66098 5.70517 5.73407 5.76535 5.84677 5.89254 6.02512 6.13911 6.20978 6.22072 6.41023 6.59804 6.65182 6.88416 7.05187 7.18829 7.65664 7.78805 7.98708 8.15616 8.39680 8.80913 9.03291 9.60600 11.10971 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.002998 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.518526 B = 9337.160313 C = 9988.141036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.158 3.842 5 H 0.072 0.928 6 C -0.128 4.128 7 C -0.132 4.132 8 C 0.099 3.901 9 N -0.639 5.639 10 C 0.718 3.282 11 O -0.588 6.588 12 N -0.741 5.741 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.392 0.608 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -19.753 -16.612 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.054 3.946 5 H 0.090 0.910 6 C -0.166 4.166 7 C -0.170 4.170 8 C -0.025 4.025 9 N -0.378 5.378 10 C 0.420 3.580 11 O -0.466 6.466 12 N -0.395 5.395 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.471 -19.858 -15.623 25.504 hybrid contribution 0.787 1.164 -0.451 1.476 sum -2.684 -18.694 -16.073 24.799 Atomic orbital electron populations 1.21755 0.95864 1.01322 1.01949 1.21474 0.95944 0.96585 1.01777 1.22047 0.94403 0.97019 1.03716 1.21382 0.94220 0.82064 0.96978 0.91042 1.22745 0.98183 0.99770 0.95854 1.22758 0.98455 0.94750 1.01084 1.22251 0.96624 0.97473 0.86111 1.47677 1.60246 1.15592 1.14298 1.15523 0.80351 0.80462 0.81622 1.90897 1.45121 1.74338 1.36228 1.45432 1.54701 1.17458 1.21936 1.21509 1.01007 0.90390 0.85902 1.21884 0.98439 0.93538 1.01917 1.19029 0.97539 0.93337 0.91452 1.21206 1.31054 1.01577 1.02183 0.92670 1.25030 0.95658 0.98577 0.95213 1.69964 1.42102 1.34620 1.06595 0.86585 0.80205 0.83668 0.77471 1.20665 1.21205 1.19912 0.92922 0.92582 0.92922 0.92162 0.91982 0.89823 0.92170 0.90373 0.90119 0.89895 0.90541 0.91589 0.90937 0.77390 0.91975 0.91985 0.92824 0.92821 0.96232 0.96242 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.03 5.85 -26.73 -0.16 -1.19 16 3 C -0.13 -1.46 4.69 -26.73 -0.13 -1.59 16 4 C 0.16 1.67 2.93 -66.96 -0.20 1.47 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.13 -0.89 5.54 -24.90 -0.14 -1.02 16 7 C -0.13 -0.86 7.08 -24.58 -0.17 -1.04 16 8 C 0.10 0.87 6.68 -2.53 -0.02 0.85 16 9 N -0.64 -7.96 3.07 -168.69 -0.52 -8.48 16 10 C 0.72 11.89 8.31 -86.92 -0.72 11.17 16 11 O -0.59 -11.98 15.13 5.29 0.08 -11.90 16 12 N -0.74 -11.62 5.52 -65.23 -0.36 -11.98 16 13 C 0.14 2.51 5.67 -4.04 -0.02 2.48 16 14 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 7.35 -51.93 -0.38 0.04 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 30 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 31 H 0.08 0.50 7.77 -51.93 -0.40 0.09 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.59 7.12 -51.93 -0.37 0.22 16 37 H 0.39 5.10 6.87 -40.82 -0.28 4.82 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -32.90 351.15 -9.74 -42.64 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.07 Total: -0.55 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -1.87 Total: -5.30 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.14 Total: -46.77 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.90 -9.74 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263080213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.406 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds