Wall clock time and date at job start Mon Mar 30 2020 00:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47346 * 2 1 4 4 C 1.53002 * 109.46907 * 184.93870 * 3 2 1 5 5 H 1.08991 * 110.00097 * 306.55692 * 4 3 2 6 6 C 1.54310 * 109.77137 * 67.71888 * 4 3 2 7 7 C 1.55158 * 102.86180 * 141.88349 * 6 4 3 8 8 C 1.54911 * 101.58165 * 324.29853 * 7 6 4 9 9 N 1.47028 * 109.87573 * 185.46522 * 4 3 2 10 10 C 1.34776 * 125.64879 * 61.68070 * 9 4 3 11 11 O 1.21587 * 119.99963 * 354.79374 * 10 9 4 12 12 N 1.34774 * 119.99735 * 174.79111 * 10 9 4 13 13 C 1.46504 * 120.00029 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47075 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46609 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46803 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99996 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99586 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00534 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99529 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47034 * 90.00252 * 20 18 16 22 22 H 1.48500 * 109.46652 * 210.00113 * 20 18 16 23 23 H 1.48503 * 109.47160 * 329.99679 * 20 18 16 24 24 H 1.08999 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47081 * 300.00132 * 1 2 3 26 26 H 1.09004 * 109.46845 * 59.99852 * 1 2 3 27 27 H 1.09002 * 109.47209 * 240.00459 * 2 1 3 28 28 H 1.09003 * 109.47355 * 120.00277 * 2 1 3 29 29 H 1.09000 * 109.46845 * 64.93996 * 3 2 1 30 30 H 1.09001 * 109.46980 * 304.94170 * 3 2 1 31 31 H 1.08997 * 110.92864 * 23.46998 * 6 4 3 32 32 H 1.08996 * 110.58895 * 260.13675 * 6 4 3 33 33 H 1.09003 * 111.00363 * 206.22912 * 7 6 4 34 34 H 1.09003 * 111.00854 * 82.37096 * 7 6 4 35 35 H 1.09004 * 110.36698 * 278.17171 * 8 7 6 36 36 H 1.09003 * 110.46407 * 155.89183 * 8 7 6 37 37 H 0.96998 * 120.00515 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.46996 * 59.99489 * 13 12 10 39 39 H 1.09000 * 109.46668 * 300.00037 * 13 12 10 40 40 H 1.08998 * 109.47430 * 60.00297 * 14 13 12 41 41 H 1.09000 * 109.47320 * 299.99536 * 14 13 12 42 42 H 1.08999 * 109.47191 * 60.00440 * 15 14 13 43 43 H 1.09000 * 109.47629 * 299.99712 * 15 14 13 44 44 H 0.96998 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.4442 -0.1242 5 1 4.0026 0.8112 0.6477 6 6 3.9755 0.9330 -1.5211 7 6 5.1864 1.8355 -1.8770 8 6 4.7651 3.1851 -1.2441 9 7 4.0756 2.8168 0.0059 10 6 3.9408 3.6055 1.0905 11 8 3.2744 3.2306 2.0358 12 7 4.5448 4.8098 1.1271 13 6 4.3988 5.6670 2.3062 14 6 5.1769 6.9667 2.0914 15 6 5.0237 7.8621 3.3226 16 6 5.7907 9.1421 3.1113 17 1 6.3327 9.3011 2.1908 18 6 5.7995 10.1104 4.0927 19 7 5.1391 9.9169 5.2134 20 14 6.7496 11.6973 3.8305 21 1 5.8645 12.7045 3.1924 22 1 7.2228 12.2130 5.1402 23 1 7.9169 11.4357 2.9506 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7508 1.9301 0.9309 30 1 1.6063 1.9813 -0.8424 31 1 3.1673 1.0711 -2.2392 32 1 4.2757 -0.1137 -1.4732 33 1 5.2998 1.9290 -2.9571 34 1 6.1020 1.4589 -1.4208 35 1 4.0863 3.7202 -1.9083 36 1 5.6423 3.7949 -1.0278 37 1 5.0762 5.1091 0.3728 38 1 4.7897 5.1495 3.1822 39 1 3.3444 5.8964 2.4602 40 1 4.7854 7.4840 1.2154 41 1 6.2313 6.7376 1.9371 42 1 5.4149 7.3450 4.1988 43 1 3.9693 8.0911 3.4765 44 1 5.1457 10.5980 5.9040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263080213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:40 Heat of formation + Delta-G solvation = -81.265118 kcal Electronic energy + Delta-G solvation = -20475.218312 eV Core-core repulsion = 17425.397896 eV Total energy + Delta-G solvation = -3049.820416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45572 -39.01663 -36.91505 -35.74631 -35.09388 -33.27956 -32.08125 -30.67767 -28.45569 -26.59924 -25.25147 -23.66576 -22.66750 -22.30916 -21.58136 -20.51224 -18.98830 -18.46343 -17.56122 -16.86027 -16.52376 -16.27312 -16.04193 -15.52678 -15.40111 -14.64781 -14.46420 -14.32212 -14.09098 -13.87116 -13.73833 -13.62528 -13.40558 -12.92506 -12.75642 -12.56655 -12.51781 -12.37412 -12.08904 -11.93135 -11.82062 -11.69312 -11.60799 -11.55003 -11.40255 -11.23528 -11.04155 -10.55960 -10.24048 -9.48001 -8.19690 -6.31526 1.41396 1.43215 1.53938 1.59345 2.10223 2.41722 3.01821 3.14003 3.65992 3.69337 3.88081 4.12577 4.16412 4.18117 4.20500 4.25448 4.40982 4.51361 4.53433 4.60531 4.69411 4.88841 4.92862 4.93455 4.95123 4.96235 5.02350 5.06415 5.14375 5.14437 5.22945 5.34795 5.37985 5.43091 5.45698 5.53359 5.55754 5.69475 5.83313 6.06226 6.21786 6.85462 6.98303 7.38094 7.54594 8.92638 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.002998 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.518526 B = 9337.160313 C = 9988.141036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.128 4.128 4 C 0.147 3.853 5 H 0.055 0.945 6 C -0.117 4.117 7 C -0.123 4.123 8 C 0.088 3.912 9 N -0.636 5.636 10 C 0.711 3.289 11 O -0.636 6.636 12 N -0.731 5.731 13 C 0.150 3.850 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.259 1.259 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.408 0.592 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -20.243 -19.940 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.166 4.166 4 C 0.044 3.956 5 H 0.074 0.926 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.034 4.034 9 N -0.374 5.374 10 C 0.412 3.588 11 O -0.518 6.518 12 N -0.387 5.387 13 C 0.026 3.974 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.183 1.183 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.245 0.755 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.058 -20.372 -19.029 27.953 hybrid contribution 0.316 1.264 0.587 1.429 sum -1.742 -19.109 -18.442 26.614 Atomic orbital electron populations 1.21765 0.95651 1.02145 1.01377 1.21452 0.96114 0.94994 1.02661 1.21957 0.95023 0.98267 1.01374 1.21635 0.93724 0.80988 0.99251 0.92635 1.22745 0.98809 1.00789 0.93093 1.22773 0.98015 0.92712 1.02546 1.22604 0.96873 0.99395 0.84559 1.47764 1.59644 1.15736 1.14212 1.15732 0.80064 0.80755 0.82225 1.90866 1.47070 1.75360 1.38455 1.45090 1.54992 1.17088 1.21498 1.21075 0.99558 0.90141 0.86645 1.21577 0.99570 0.92993 0.99513 1.18939 0.95376 0.93950 0.93089 1.21672 1.31161 1.02369 1.02660 0.91454 1.26047 0.96666 1.02663 0.94810 1.70115 1.43731 1.36081 1.07699 0.85392 0.79009 0.78708 0.77593 1.19775 1.21030 1.18344 0.91376 0.94427 0.92265 0.89474 0.92765 0.94382 0.91780 0.89037 0.88119 0.87065 0.90453 0.90432 0.90183 0.75504 0.93646 0.93696 0.91381 0.91374 0.98971 0.98999 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.11 -1.87 5.85 30.60 0.18 -1.69 16 3 C -0.13 -2.81 4.69 30.60 0.14 -2.67 16 4 C 0.15 3.00 2.93 45.34 0.13 3.13 16 5 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 6 C -0.12 -1.23 5.54 31.78 0.18 -1.05 16 7 C -0.12 -1.13 7.08 31.99 0.23 -0.90 16 8 C 0.09 1.30 6.68 86.86 0.58 1.88 16 9 N -0.64 -15.41 3.07 -805.88 -2.47 -17.88 16 10 C 0.71 23.99 8.31 179.06 1.49 25.48 16 11 O -0.64 -27.40 15.13 -3.99 -0.06 -27.46 16 12 N -0.73 -22.85 5.52 -478.54 -2.64 -25.49 16 13 C 0.15 5.75 5.67 86.38 0.49 6.24 16 14 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 15 C 0.02 1.29 4.97 29.85 0.15 1.44 16 16 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 20 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.97 7.35 -2.39 -0.02 0.96 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 1.19 6.54 -2.39 -0.02 1.17 16 30 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 31 H 0.09 0.78 7.77 -2.39 -0.02 0.76 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.08 7.12 -2.39 -0.02 1.06 16 37 H 0.41 9.99 6.87 -92.71 -0.64 9.35 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -74.45 351.15 2.59 -71.87 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.31 Total: 14.17 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.13 Total: -3.71 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.82 Total: -101.00 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.06 Total: -27.46 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -74.45 2.59 -71.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263080213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.398 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds