Wall clock time and date at job start Mon Mar 30 2020 00:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47185 * 2 1 4 4 C 1.53006 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47023 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00242 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00207 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08996 * 110.05786 * 306.41713 * 9 8 7 11 11 C 1.53879 * 110.03196 * 67.83445 * 9 8 7 12 12 C 1.54267 * 106.60134 * 119.28084 * 11 9 8 13 13 C 1.54893 * 104.19282 * 23.60896 * 12 11 9 14 14 H 1.09003 * 110.91041 * 80.44593 * 13 12 11 15 15 N 1.46499 * 110.75633 * 203.74048 * 13 12 11 16 16 C 1.36935 * 119.99938 * 268.33095 * 15 13 12 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 13 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 C 1.54270 * 110.03237 * 184.99531 * 9 8 7 25 25 H 1.08991 * 109.47196 * 59.99667 * 1 2 3 26 26 H 1.09006 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46798 * 299.99178 * 1 2 3 28 28 H 1.09003 * 109.46907 * 240.00319 * 2 1 3 29 29 H 1.08998 * 109.47766 * 120.00666 * 2 1 3 30 30 H 1.08999 * 109.46582 * 60.00690 * 3 2 1 31 31 H 1.08991 * 109.47326 * 300.00254 * 3 2 1 32 32 H 1.08999 * 109.46495 * 60.00038 * 4 3 2 33 33 H 1.08999 * 109.47111 * 300.00703 * 4 3 2 34 34 H 0.97004 * 119.99857 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.47260 * 59.99379 * 8 7 5 36 36 H 1.08999 * 109.47225 * 299.99578 * 8 7 5 37 37 H 1.08994 * 110.03346 * 238.57245 * 11 9 8 38 38 H 1.09005 * 110.02974 * 359.94800 * 11 9 8 39 39 H 1.08998 * 110.48796 * 264.93589 * 12 11 9 40 40 H 1.08998 * 110.48646 * 142.28496 * 12 11 9 41 41 H 0.96999 * 119.99984 * 88.33030 * 15 13 12 42 42 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.48043 * 98.42991 * 24 9 8 44 44 H 1.09002 * 110.60152 * 335.84626 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1096 -0.0009 8 6 5.8858 4.4908 0.0002 9 6 7.4157 4.4908 -0.0005 10 1 7.7900 3.8821 0.8226 11 6 7.9422 3.9467 -1.3402 12 6 8.7721 5.0788 -1.9801 13 6 9.1989 5.9613 -0.7808 14 1 10.0573 5.5295 -0.2661 15 7 9.4928 7.3275 -1.2202 16 6 10.7697 7.6732 -1.5739 17 1 11.5611 6.9399 -1.5248 18 6 11.0481 8.9677 -1.9908 19 7 10.0849 9.8629 -2.0456 20 14 12.7902 9.4395 -2.4726 21 1 12.9854 9.1955 -3.9244 22 1 13.0129 10.8779 -2.1781 23 1 13.7570 8.6202 -1.6986 24 6 7.9442 5.9345 0.1269 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9338 0.9285 0.8890 34 1 6.0278 2.3723 -0.0016 35 1 5.5232 5.0036 0.8911 36 1 5.5217 5.0057 -0.8888 37 1 8.5718 3.0740 -1.1673 38 1 7.1076 3.6818 -1.9894 39 1 8.1614 5.6523 -2.6774 40 1 9.6481 4.6712 -2.4846 41 1 8.7829 7.9873 -1.2606 42 1 10.2795 10.7675 -2.3365 43 1 8.2160 6.1513 1.1600 44 1 7.2008 6.6479 -0.2288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263890774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:27 Heat of formation + Delta-G solvation = -66.757280 kcal Electronic energy + Delta-G solvation = -20031.401777 eV Core-core repulsion = 16982.210468 eV Total energy + Delta-G solvation = -3049.191309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91042 -38.16464 -35.70047 -34.84632 -33.36543 -31.18631 -30.47278 -28.93348 -27.29512 -25.28677 -23.72639 -23.00999 -21.42505 -20.54263 -19.62874 -19.34547 -17.21713 -16.94154 -16.35147 -16.07326 -15.46058 -14.89839 -14.79307 -14.07624 -13.93767 -13.75178 -13.56689 -13.16702 -12.82385 -12.61800 -12.58433 -12.14385 -11.84377 -11.61550 -11.51353 -11.30439 -11.15777 -10.88297 -10.85692 -10.79246 -10.58905 -10.54870 -10.26116 -10.14528 -9.97617 -9.77056 -9.63800 -9.09158 -8.87151 -6.93814 -5.75901 -3.04485 2.57815 3.12165 3.43641 3.48609 3.50492 4.49800 4.55121 4.59413 4.63434 4.81626 4.93649 4.96350 4.99438 5.07503 5.17487 5.36251 5.50334 5.51990 5.53760 5.56617 5.62200 5.70519 5.75662 5.83401 5.90037 5.95289 5.97229 6.03750 6.06930 6.09264 6.24180 6.34029 6.41030 6.47768 6.57394 6.72555 6.87966 7.11174 7.42920 7.70852 8.16377 8.42992 9.53730 10.12825 10.46847 11.46753 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.059847 B = 0.002559 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.744969 B =10939.032159 C =11108.519293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.507 3.493 6 O -0.543 6.543 7 N -0.729 5.729 8 C 0.125 3.875 9 C -0.100 4.100 10 H 0.073 0.927 11 C -0.120 4.120 12 C -0.144 4.144 13 C 0.177 3.823 14 H 0.055 0.945 15 N -0.721 5.721 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.123 4.123 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 -21.122 5.199 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.181 4.181 5 C 0.293 3.707 6 O -0.420 6.420 7 N -0.381 5.381 8 C 0.002 3.998 9 C -0.120 4.120 10 H 0.091 0.909 11 C -0.158 4.158 12 C -0.185 4.185 13 C 0.066 3.934 14 H 0.074 0.926 15 N -0.360 5.360 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.647 -20.389 5.176 25.075 hybrid contribution 1.112 0.166 -0.385 1.188 sum -12.536 -20.223 4.791 24.271 Atomic orbital electron populations 1.21762 0.95722 1.01485 1.02079 1.21551 0.96154 0.96637 1.01927 1.21377 0.92765 0.96524 1.03689 1.21707 0.98169 0.93995 1.04258 1.20757 0.82260 0.91715 0.75934 1.90714 1.55330 1.46628 1.49331 1.46128 1.07000 1.09476 1.75480 1.21556 0.93830 0.82069 1.02324 1.21955 0.92915 0.98627 0.98464 0.90886 1.22204 0.99303 0.98626 0.95655 1.23076 0.98720 0.96480 1.00222 1.21161 0.93830 0.86856 0.91529 0.92648 1.42394 1.08580 1.06313 1.78738 1.19262 0.86417 0.94801 1.36594 0.91193 1.24760 0.97541 0.96274 1.02511 1.69661 1.30966 1.03665 1.53800 0.86194 0.84266 0.77491 0.78263 1.21759 1.21792 1.20789 1.22614 0.98986 0.94054 1.00589 0.92629 0.92826 0.92655 0.92003 0.92035 0.91223 0.91185 0.88987 0.89051 0.76664 0.91650 0.91238 0.92474 0.92431 0.91865 0.92591 0.78186 0.93506 0.91798 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.11 -0.87 4.50 -26.73 -0.12 -0.99 16 4 C -0.14 -1.06 5.70 -27.88 -0.16 -1.22 16 5 C 0.51 5.84 7.83 -10.99 -0.09 5.75 16 6 O -0.54 -8.69 15.98 5.56 0.09 -8.61 16 7 N -0.73 -7.45 5.34 -60.30 -0.32 -7.78 16 8 C 0.13 1.57 4.69 -4.05 -0.02 1.55 16 9 C -0.10 -1.25 2.96 -89.50 -0.27 -1.51 16 10 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.12 -1.54 6.19 -25.61 -0.16 -1.70 16 12 C -0.14 -2.49 6.51 -25.07 -0.16 -2.66 16 13 C 0.18 3.45 3.56 -65.94 -0.23 3.21 16 14 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 15 N -0.72 -18.08 5.23 -51.50 -0.27 -18.34 16 16 C -0.24 -6.66 9.96 -15.06 -0.15 -6.81 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.12 -1.97 5.98 -25.07 -0.15 -2.12 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 2.96 8.35 -40.82 -0.34 2.62 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.71 7.61 -51.93 -0.40 0.32 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.38 10.29 7.76 -40.82 -0.32 9.97 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -32.32 355.59 -9.02 -41.34 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.18 Total: 6.78 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.39 Total: -8.54 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.13 Total: -53.76 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.32 -9.02 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263890774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.417 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds