Wall clock time and date at job start Mon Mar 30 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47185 * 2 1 4 4 C 1.53006 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47023 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00242 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00207 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08996 * 110.05786 * 306.41713 * 9 8 7 11 11 C 1.53879 * 110.03196 * 67.83445 * 9 8 7 12 12 C 1.54267 * 106.60134 * 119.28084 * 11 9 8 13 13 C 1.54893 * 104.19282 * 23.60896 * 12 11 9 14 14 H 1.09003 * 110.91041 * 80.44593 * 13 12 11 15 15 N 1.46499 * 110.75633 * 203.74048 * 13 12 11 16 16 C 1.36935 * 119.99938 * 268.33095 * 15 13 12 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 13 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 C 1.54270 * 110.03237 * 184.99531 * 9 8 7 25 25 H 1.08991 * 109.47196 * 59.99667 * 1 2 3 26 26 H 1.09006 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46798 * 299.99178 * 1 2 3 28 28 H 1.09003 * 109.46907 * 240.00319 * 2 1 3 29 29 H 1.08998 * 109.47766 * 120.00666 * 2 1 3 30 30 H 1.08999 * 109.46582 * 60.00690 * 3 2 1 31 31 H 1.08991 * 109.47326 * 300.00254 * 3 2 1 32 32 H 1.08999 * 109.46495 * 60.00038 * 4 3 2 33 33 H 1.08999 * 109.47111 * 300.00703 * 4 3 2 34 34 H 0.97004 * 119.99857 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.47260 * 59.99379 * 8 7 5 36 36 H 1.08999 * 109.47225 * 299.99578 * 8 7 5 37 37 H 1.08994 * 110.03346 * 238.57245 * 11 9 8 38 38 H 1.09005 * 110.02974 * 359.94800 * 11 9 8 39 39 H 1.08998 * 110.48796 * 264.93589 * 12 11 9 40 40 H 1.08998 * 110.48646 * 142.28496 * 12 11 9 41 41 H 0.96999 * 119.99984 * 88.33030 * 15 13 12 42 42 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.48043 * 98.42991 * 24 9 8 44 44 H 1.09002 * 110.60152 * 335.84626 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1096 -0.0009 8 6 5.8858 4.4908 0.0002 9 6 7.4157 4.4908 -0.0005 10 1 7.7900 3.8821 0.8226 11 6 7.9422 3.9467 -1.3402 12 6 8.7721 5.0788 -1.9801 13 6 9.1989 5.9613 -0.7808 14 1 10.0573 5.5295 -0.2661 15 7 9.4928 7.3275 -1.2202 16 6 10.7697 7.6732 -1.5739 17 1 11.5611 6.9399 -1.5248 18 6 11.0481 8.9677 -1.9908 19 7 10.0849 9.8629 -2.0456 20 14 12.7902 9.4395 -2.4726 21 1 12.9854 9.1955 -3.9244 22 1 13.0129 10.8779 -2.1781 23 1 13.7570 8.6202 -1.6986 24 6 7.9442 5.9345 0.1269 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9338 0.9285 0.8890 34 1 6.0278 2.3723 -0.0016 35 1 5.5232 5.0036 0.8911 36 1 5.5217 5.0057 -0.8888 37 1 8.5718 3.0740 -1.1673 38 1 7.1076 3.6818 -1.9894 39 1 8.1614 5.6523 -2.6774 40 1 9.6481 4.6712 -2.4846 41 1 8.7829 7.9873 -1.2606 42 1 10.2795 10.7675 -2.3365 43 1 8.2160 6.1513 1.1600 44 1 7.2008 6.6479 -0.2288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263890774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:26 Heat of formation + Delta-G solvation = -87.793275 kcal Electronic energy + Delta-G solvation = -20032.313966 eV Core-core repulsion = 16982.210468 eV Total energy + Delta-G solvation = -3050.103498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86854 -39.43889 -36.49815 -36.06376 -34.96403 -32.65753 -31.53362 -30.12141 -28.77357 -26.36065 -25.15020 -24.37055 -22.04912 -21.55950 -20.95907 -20.52391 -19.16778 -17.90609 -17.27795 -16.94874 -16.66529 -16.51718 -15.70205 -15.60022 -15.19943 -14.73396 -14.52753 -14.33162 -14.19942 -13.64660 -13.54482 -13.28126 -13.20814 -12.96683 -12.68801 -12.37559 -12.17034 -12.14176 -12.07725 -11.95888 -11.84758 -11.76846 -11.64939 -11.51488 -11.42567 -11.24879 -10.89962 -10.80443 -10.05379 -8.98543 -7.94225 -5.22528 1.46502 1.48465 1.56849 1.70110 2.26766 2.56623 3.37875 3.66549 3.75237 3.80568 3.88522 3.97644 4.09108 4.30157 4.37301 4.42120 4.47786 4.52243 4.62322 4.65356 4.67797 4.78139 4.80122 4.81173 4.93413 4.96915 5.04601 5.09011 5.13405 5.14082 5.20833 5.30295 5.39562 5.41320 5.47972 5.50088 5.53320 5.58254 5.63425 6.28459 6.63322 7.33337 7.33506 8.12182 8.33654 9.29573 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.059847 B = 0.002559 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.744969 B =10939.032159 C =11108.519293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.131 4.131 5 C 0.501 3.499 6 O -0.596 6.596 7 N -0.715 5.715 8 C 0.132 3.868 9 C -0.083 4.083 10 H 0.104 0.896 11 C -0.106 4.106 12 C -0.140 4.140 13 C 0.164 3.836 14 H 0.057 0.943 15 N -0.737 5.737 16 C -0.238 4.238 17 H 0.078 0.922 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.267 1.267 24 C -0.119 4.119 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.418 0.582 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.051 0.949 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.068 0.932 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 -24.514 5.829 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.171 4.171 5 C 0.289 3.711 6 O -0.477 6.477 7 N -0.368 5.368 8 C 0.008 3.992 9 C -0.102 4.102 10 H 0.122 0.878 11 C -0.144 4.144 12 C -0.181 4.181 13 C 0.055 3.945 14 H 0.075 0.925 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.096 0.904 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.216 1.216 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.158 4.158 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.761 -23.879 5.820 27.693 hybrid contribution 0.804 1.180 -0.561 1.535 sum -11.957 -22.699 5.259 26.189 Atomic orbital electron populations 1.21797 0.96074 1.02039 1.01503 1.21519 0.95869 0.95152 1.03113 1.21351 0.93668 0.97592 1.01788 1.21743 0.97221 0.91299 1.06813 1.21555 0.82027 0.92939 0.74539 1.90700 1.56672 1.48598 1.51772 1.45964 1.07178 1.08974 1.74655 1.21288 0.93785 0.83322 1.00801 1.21820 0.92544 0.96347 0.99459 0.87756 1.22132 0.99300 0.97742 0.95250 1.22910 0.98905 0.97353 0.98899 1.21481 0.95396 0.84517 0.93066 0.92464 1.42635 1.07431 1.08358 1.79128 1.19678 0.87626 0.94857 1.34821 0.90439 1.25607 1.01466 0.96554 1.03747 1.69830 1.33024 1.03729 1.55772 0.85129 0.79954 0.76756 0.77875 1.21565 1.22394 1.19172 1.22517 0.97022 0.96368 0.99866 0.93348 0.91662 0.93205 0.90848 0.90665 0.93091 0.93333 0.86401 0.86135 0.74462 0.92640 0.93660 0.89324 0.91519 0.94461 0.92982 0.79805 0.94152 0.91281 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.11 -1.62 4.50 30.60 0.14 -1.48 16 4 C -0.13 -1.57 5.70 29.85 0.17 -1.40 16 5 C 0.50 10.73 7.83 87.66 0.69 11.41 16 6 O -0.60 -19.30 15.98 -3.03 -0.05 -19.35 16 7 N -0.72 -12.70 5.34 -463.08 -2.47 -15.17 16 8 C 0.13 3.13 4.69 86.38 0.40 3.54 16 9 C -0.08 -1.84 2.96 -10.07 -0.03 -1.87 16 10 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 11 C -0.11 -2.41 6.19 31.32 0.19 -2.21 16 12 C -0.14 -4.72 6.51 31.67 0.21 -4.52 16 13 C 0.16 6.31 3.56 46.28 0.16 6.48 16 14 H 0.06 2.19 8.09 -2.39 -0.02 2.17 16 15 N -0.74 -37.71 5.23 -316.85 -1.66 -39.37 16 16 C -0.24 -13.32 9.96 84.04 0.84 -12.48 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 19 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 20 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C -0.12 -3.72 5.98 31.67 0.19 -3.53 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.42 4.34 8.35 -92.71 -0.77 3.56 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.44 7.61 -2.38 -0.02 1.42 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.37 20.64 7.76 -92.71 -0.72 19.92 16 42 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.05 1.79 7.73 -2.39 -0.02 1.77 16 Total: -1.00 -73.04 355.59 1.92 -71.12 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.53 Total: 27.11 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.32 Total: -12.44 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.85 Total: -115.08 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.04 1.92 -71.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263890774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.675 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds